Wall clock time and date at job start Wed Apr 1 2020 04:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.52104 * 2 1 4 4 C 1.53193 * 109.49774 * 120.08032 * 2 1 3 5 5 N 1.46921 * 108.77709 * 174.58605 * 4 2 1 6 6 C 1.34778 * 120.62950 * 126.40980 * 5 4 2 7 7 O 1.21600 * 120.00189 * 354.35341 * 6 5 4 8 8 C 1.47433 * 119.99697 * 174.35394 * 6 5 4 9 9 C 1.38041 * 126.41549 * 319.23291 * 8 6 5 10 10 N 1.34255 * 107.41687 * 179.97438 * 9 8 6 11 11 C 1.46503 * 125.75627 * 180.02562 * 10 9 8 12 12 N 1.39939 * 108.49507 * 359.97438 * 10 9 8 13 13 C 1.30451 * 108.89392 * 359.73691 * 12 10 9 14 14 C 1.50697 * 125.99091 * 180.26311 * 13 12 10 15 15 C 1.53781 * 113.61132 * 37.66728 * 14 13 12 16 16 C 1.53781 * 87.07999 * 220.02069 * 15 14 13 17 17 C 1.53775 * 87.08448 * 25.43414 * 16 15 14 18 18 C 1.46922 * 118.74146 * 306.39200 * 5 4 2 19 19 C 1.53198 * 108.77453 * 53.60197 * 18 5 4 20 20 C 1.53033 * 109.31498 * 305.37128 * 19 18 5 21 21 H 1.09001 * 109.46097 * 301.35426 * 20 19 18 22 22 N 1.46503 * 109.46225 * 181.38632 * 20 19 18 23 23 C 1.36932 * 120.00031 * 84.99439 * 22 20 19 24 24 H 1.08001 * 120.00522 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99740 * 180.02562 * 23 22 20 26 26 N 1.31616 * 120.00081 * 359.97438 * 25 23 22 27 27 Si 1.86806 * 119.99812 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47035 * 179.97438 * 27 25 23 29 29 H 1.48502 * 109.46823 * 299.99363 * 27 25 23 30 30 H 1.48497 * 109.47236 * 59.99913 * 27 25 23 31 31 H 1.09009 * 109.47023 * 180.08400 * 1 2 3 32 32 H 1.09001 * 109.47206 * 300.07941 * 1 2 3 33 33 H 1.09004 * 109.47214 * 60.08466 * 1 2 3 34 34 H 1.09001 * 109.58930 * 54.79333 * 4 2 1 35 35 H 1.09004 * 109.58712 * 294.37439 * 4 2 1 36 36 H 1.08001 * 126.29432 * 359.97438 * 9 8 6 37 37 H 1.08997 * 109.47084 * 89.99922 * 11 10 9 38 38 H 1.08993 * 109.47288 * 210.00104 * 11 10 9 39 39 H 1.09000 * 109.46640 * 329.99709 * 11 10 9 40 40 H 1.08995 * 112.85178 * 168.97611 * 14 13 12 41 41 H 1.08996 * 113.61500 * 334.56908 * 15 14 13 42 42 H 1.09003 * 113.61407 * 105.47305 * 15 14 13 43 43 H 1.09005 * 113.61546 * 270.88427 * 16 15 14 44 44 H 1.09003 * 113.69576 * 139.99876 * 16 15 14 45 45 H 1.09000 * 113.61980 * 220.02296 * 17 16 15 46 46 H 1.08997 * 113.68894 * 89.12141 * 17 16 15 47 47 H 1.09004 * 109.58421 * 293.82063 * 18 5 4 48 48 H 1.08996 * 109.70920 * 173.46552 * 18 5 4 49 49 H 1.08997 * 109.49487 * 185.41622 * 19 18 5 50 50 H 1.09001 * 109.49457 * 65.32431 * 19 18 5 51 51 H 0.96998 * 119.99765 * 265.00022 * 22 20 19 52 52 H 0.97004 * 120.00016 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5045 -0.8291 1.1696 6 6 4.2810 -0.3863 2.1783 7 8 3.7802 0.1981 3.1197 8 6 5.7377 -0.6106 2.1403 9 6 6.3793 -1.7601 1.7249 10 7 7.6996 -1.5498 1.8468 11 6 8.7539 -2.5115 1.5152 12 7 7.8992 -0.2566 2.3429 13 6 6.7386 0.3134 2.5156 14 6 6.5060 1.7109 3.0292 15 6 7.5402 2.7320 2.5265 16 6 7.5143 3.3363 3.9404 17 6 7.0709 1.9510 4.4393 18 6 4.1053 -1.4267 -0.0306 19 6 3.5707 -0.6951 -1.2660 20 6 2.0408 -0.7231 -1.2483 21 1 1.6967 -1.7573 -1.2350 22 7 1.5264 -0.0531 -2.4453 23 6 1.3951 -0.7498 -3.6168 24 1 1.6702 -1.7933 -3.6583 25 6 0.9082 -0.1147 -4.7510 26 7 0.5724 1.1568 -4.7003 27 14 0.7283 -1.0653 -6.3491 28 1 0.1909 -0.1665 -7.4019 29 1 2.0554 -1.5826 -6.7693 30 1 -0.2048 -2.2026 -6.1462 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3634 0.5151 0.8893 33 1 -0.3634 0.5125 -0.8908 34 1 1.6052 -1.7216 1.2981 35 1 1.7637 -0.1579 2.1389 36 1 5.9061 -2.6628 1.3675 37 1 9.0459 -2.3854 0.4727 38 1 9.6174 -2.3399 2.1577 39 1 8.3826 -3.5248 1.6686 40 1 5.4734 2.0390 2.9108 41 1 8.4988 2.2871 2.2593 42 1 7.1545 3.4020 1.7581 43 1 6.7578 4.1101 4.0707 44 1 8.4959 3.6384 4.3057 45 1 6.3062 1.9903 5.2150 46 1 7.9002 1.2916 4.6954 47 1 3.8375 -2.4819 -0.0866 48 1 5.1898 -1.3268 0.0125 49 1 3.9333 -1.1898 -2.1670 50 1 3.9159 0.3388 -1.2541 51 1 1.2790 0.8840 -2.4079 52 1 0.2325 1.6007 -5.4931 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036080788.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:29 Heat of formation + Delta-G solvation = 52.791711 kcal Electronic energy + Delta-G solvation = -31471.060826 eV Core-core repulsion = 27472.221929 eV Total energy + Delta-G solvation = -3998.838898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.59994 -40.83298 -39.41906 -38.81005 -36.12654 -34.54314 -34.14857 -33.04728 -31.51716 -30.92689 -28.81492 -27.64336 -26.82101 -26.52544 -25.82718 -24.55888 -23.08154 -22.84998 -21.93365 -21.10561 -20.27411 -19.75687 -19.02936 -18.16951 -17.58555 -16.84130 -16.70739 -16.55169 -16.34619 -16.02158 -15.79288 -15.65147 -15.43972 -14.98941 -14.76350 -14.47814 -14.16434 -14.02631 -13.76022 -13.73148 -13.56455 -13.37719 -13.27472 -13.13195 -12.98834 -12.81973 -12.79386 -12.72049 -12.43320 -12.19070 -12.07791 -12.01491 -11.80941 -11.65097 -11.62148 -11.40349 -11.24157 -11.12648 -10.90435 -10.79837 -10.24605 -9.71858 -9.47347 -8.93860 -7.88845 -5.16486 0.60571 1.12370 1.46313 1.49366 1.51760 1.57583 1.94600 2.30108 2.59791 3.32159 3.44351 3.58328 3.71528 3.79690 3.81631 3.83902 3.91288 3.99304 4.01831 4.12243 4.14883 4.23739 4.34497 4.41133 4.45665 4.50913 4.54296 4.60245 4.70297 4.73577 4.77189 4.81169 4.83041 4.83812 4.87462 4.88706 5.00026 5.04180 5.05262 5.06216 5.22602 5.26601 5.34493 5.40381 5.43702 5.53760 5.55665 5.59115 5.68333 5.93779 6.32106 6.44908 6.61046 7.22896 7.38493 8.15277 8.38440 9.34775 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012654 B = 0.002756 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.254221 B =10158.057072 C =10664.992050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.046 0.954 4 C 0.129 3.871 5 N -0.602 5.602 6 C 0.594 3.406 7 O -0.581 6.581 8 C -0.312 4.312 9 C 0.114 3.886 10 N -0.358 5.358 11 C 0.087 3.913 12 N -0.315 5.315 13 C 0.124 3.876 14 C -0.047 4.047 15 C -0.126 4.126 16 C -0.129 4.129 17 C -0.118 4.118 18 C 0.114 3.886 19 C -0.142 4.142 20 C 0.181 3.819 21 H 0.054 0.946 22 N -0.733 5.733 23 C -0.229 4.229 24 H 0.080 0.920 25 C -0.079 4.079 26 N -0.973 5.973 27 Si 0.968 3.032 28 H -0.302 1.302 29 H -0.278 1.278 30 H -0.278 1.278 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.221 0.779 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.067 0.933 50 H 0.034 0.966 51 H 0.369 0.631 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.954 -8.561 17.066 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 H 0.064 0.936 4 C 0.007 3.993 5 N -0.334 5.334 6 C 0.384 3.616 7 O -0.462 6.462 8 C -0.327 4.327 9 C -0.038 4.038 10 N -0.135 5.135 11 C -0.052 4.052 12 N -0.136 5.136 13 C -0.043 4.043 14 C -0.068 4.068 15 C -0.164 4.164 16 C -0.166 4.166 17 C -0.156 4.156 18 C -0.009 4.009 19 C -0.183 4.183 20 C 0.073 3.927 21 H 0.072 0.928 22 N -0.371 5.371 23 C -0.361 4.361 24 H 0.098 0.902 25 C -0.270 4.270 26 N -0.624 5.624 27 Si 0.798 3.202 28 H -0.229 1.229 29 H -0.204 1.204 30 H -0.204 1.204 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.238 0.762 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.116 0.884 48 H 0.114 0.886 49 H 0.086 0.914 50 H 0.053 0.947 51 H 0.200 0.800 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 18.108 -8.425 17.470 26.535 hybrid contribution -1.423 0.257 -1.487 2.075 sum 16.684 -8.168 15.983 24.506 Atomic orbital electron populations 1.21569 0.93891 1.02143 1.01077 1.21612 0.96694 0.98906 0.94881 0.93573 1.21600 0.78749 1.01446 0.97553 1.48036 1.06747 1.60637 1.17959 1.17600 0.85521 0.77077 0.81378 1.90705 1.75572 1.43818 1.36133 1.20192 0.93427 0.98185 1.20911 1.23540 0.84204 0.99873 0.96193 1.48690 1.06196 1.11411 1.47244 1.22410 0.89124 0.90325 1.03345 1.77007 1.21870 0.92577 1.22185 1.22247 0.89235 0.96650 0.96120 1.21134 1.00014 0.87464 0.98138 1.22928 0.98560 0.96997 0.97930 1.22783 1.02680 0.96078 0.95080 1.22834 1.00347 0.97915 0.94536 1.22023 0.98843 0.97799 0.82224 1.22468 0.98567 0.99597 0.97619 1.20420 0.91472 0.95493 0.85336 0.92808 1.42613 1.76858 1.10811 1.06839 1.19581 1.33652 0.94436 0.88444 0.90213 1.25506 1.03288 0.96892 1.01357 1.69823 1.52132 1.11189 1.29261 0.85283 0.77916 0.77347 0.79655 1.22907 1.20376 1.20392 0.91970 0.91852 0.94243 0.89239 0.89955 0.76246 0.88899 0.88578 0.85875 0.89200 0.89643 0.91456 0.89365 0.89665 0.91334 0.90048 0.88442 0.88622 0.91417 0.94737 0.79969 0.94349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.03 71.98 0.65 -3.54 16 2 C -0.10 -3.34 2.46 -10.72 -0.03 -3.37 16 3 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 4 C 0.13 3.60 5.73 86.36 0.49 4.09 16 5 N -0.60 -16.36 2.97 -822.78 -2.45 -18.80 16 6 C 0.59 18.05 7.33 86.67 0.64 18.69 16 7 O -0.58 -21.48 15.57 -4.03 -0.06 -21.55 16 8 C -0.31 -8.12 5.21 -20.15 -0.10 -8.23 16 9 C 0.11 2.01 9.11 84.28 0.77 2.78 16 10 N -0.36 -6.19 3.98 -367.79 -1.46 -7.65 16 11 C 0.09 0.59 11.44 127.77 1.46 2.05 16 12 N -0.31 -7.62 12.09 -46.67 -0.56 -8.19 16 13 C 0.12 3.34 6.32 43.52 0.28 3.62 16 14 C -0.05 -1.22 3.95 -11.01 -0.04 -1.27 16 15 C -0.13 -2.75 7.62 31.12 0.24 -2.51 16 16 C -0.13 -2.33 8.08 31.12 0.25 -2.08 16 17 C -0.12 -2.56 7.63 31.12 0.24 -2.32 16 18 C 0.11 2.64 5.48 86.37 0.47 3.11 16 19 C -0.14 -4.61 5.66 30.67 0.17 -4.43 16 20 C 0.18 6.67 2.19 45.01 0.10 6.77 16 21 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 22 N -0.73 -35.53 4.41 -322.82 -1.42 -36.95 16 23 C -0.23 -12.15 9.93 84.03 0.83 -11.32 16 24 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 25 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 26 N -0.97 -59.35 13.06 21.65 0.28 -59.07 16 27 Si 0.97 45.23 29.55 68.60 2.03 47.25 16 28 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 29 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 30 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 31 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.04 1.55 7.36 -2.39 -0.02 1.53 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.08 2.46 7.00 -2.38 -0.02 2.44 16 36 H 0.22 2.00 7.37 -2.91 -0.02 1.98 16 37 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.09 2.73 7.21 -2.39 -0.02 2.71 16 41 H 0.08 1.88 7.77 -2.39 -0.02 1.87 16 42 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 44 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 45 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.08 1.76 8.09 -2.39 -0.02 1.74 16 47 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.10 1.95 4.84 -2.39 -0.01 1.93 16 49 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 50 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.37 19.94 7.51 -92.71 -0.70 19.25 16 52 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -74.84 410.95 3.45 -71.39 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: 0.22 Total: 35.47 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 6.88 Total: -1.91 kcal Atomic # 7 Polarization: -125.04 SS G_CDS: -5.61 Total: -130.66 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.06 Total: -21.55 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -74.84 3.45 -71.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036080788.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.181 kcal (2) G-P(sol) polarization free energy of solvation -74.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds