Wall clock time and date at job start Wed Apr 1 2020 04:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49680 * 2 1 4 4 C 1.53628 * 109.45827 * 120.20550 * 2 1 3 5 5 N 1.46928 * 108.54271 * 174.74223 * 4 2 1 6 6 C 1.34778 * 120.62867 * 126.36780 * 5 4 2 7 7 O 1.21277 * 120.00135 * 359.72287 * 6 5 4 8 8 C 1.50702 * 119.99838 * 179.72123 * 6 5 4 9 9 N 1.46499 * 109.46795 * 180.02562 * 8 6 5 10 10 C 1.35314 * 126.49688 * 264.95604 * 9 8 6 11 11 N 1.30754 * 108.76399 * 180.02562 * 10 9 8 12 12 C 1.33578 * 109.15133 * 359.97438 * 11 10 9 13 13 C 1.35025 * 107.97617 * 0.05654 * 12 11 10 14 14 C 1.50652 * 124.45301 * 179.97438 * 13 12 11 15 15 C 1.53399 * 108.41426 * 343.53233 * 14 13 12 16 16 C 1.53210 * 109.40434 * 49.63435 * 15 14 13 17 17 C 1.50863 * 128.03458 * 180.08849 * 12 11 10 18 18 C 1.46925 * 118.73825 * 306.09481 * 5 4 2 19 19 C 1.53192 * 108.77463 * 53.86121 * 18 5 4 20 20 C 1.53039 * 109.49974 * 239.93259 * 2 1 3 21 21 H 1.08997 * 109.45968 * 298.67340 * 20 2 1 22 22 N 1.46502 * 109.45566 * 58.63097 * 20 2 1 23 23 C 1.36941 * 119.99587 * 205.06459 * 22 20 2 24 24 H 1.07991 * 120.00009 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99792 * 179.97438 * 23 22 20 26 26 N 1.31627 * 119.99915 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00115 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46998 * 59.99977 * 27 25 23 29 29 H 1.48493 * 109.47085 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46893 * 300.00582 * 27 25 23 31 31 H 1.08999 * 109.46668 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47479 * 300.06467 * 1 2 3 33 33 H 1.08997 * 109.46926 * 60.06656 * 1 2 3 34 34 H 1.09000 * 109.74073 * 55.00469 * 4 2 1 35 35 H 1.08999 * 109.66537 * 294.43417 * 4 2 1 36 36 H 1.09000 * 109.47187 * 59.99955 * 8 6 5 37 37 H 1.09000 * 109.47099 * 300.00062 * 8 6 5 38 38 H 1.07996 * 125.61755 * 0.02562 * 10 9 8 39 39 H 1.09002 * 109.68231 * 103.27382 * 14 13 12 40 40 H 1.08999 * 109.68240 * 223.79047 * 14 13 12 41 41 H 1.09001 * 109.47325 * 169.65539 * 15 14 13 42 42 H 1.09003 * 109.47330 * 289.66967 * 15 14 13 43 43 H 1.08994 * 109.44842 * 169.98823 * 16 15 14 44 44 H 1.09003 * 109.45384 * 50.02839 * 16 15 14 45 45 H 1.09003 * 109.67527 * 282.98493 * 17 12 11 46 46 H 1.09001 * 109.67461 * 43.48419 * 17 12 11 47 47 H 1.08999 * 109.58245 * 173.64315 * 18 5 4 48 48 H 1.08990 * 109.58711 * 293.92900 * 18 5 4 49 49 H 1.09005 * 109.50076 * 65.31343 * 19 18 5 50 50 H 1.08999 * 109.49747 * 185.41033 * 19 18 5 51 51 H 0.96997 * 120.00265 * 25.06777 * 22 20 2 52 52 H 0.97001 * 119.99758 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0418 -0.7288 1.2519 5 7 3.5053 -0.8283 1.1690 6 6 4.2819 -0.3852 2.1776 7 8 3.7739 0.1058 3.1634 8 6 5.7814 -0.5000 2.0804 9 7 6.3926 0.0473 3.2941 10 6 6.8601 1.3059 3.4626 11 7 7.3320 1.4203 4.6766 12 6 7.1840 0.2567 5.3157 13 6 6.5989 -0.6141 4.4658 14 6 6.2600 -2.0417 4.8077 15 6 7.0408 -2.4366 6.0676 16 6 6.8451 -1.3647 7.1447 17 6 7.5792 -0.0830 6.7315 18 6 4.1060 -1.4254 -0.0315 19 6 3.5709 -0.6939 -1.2665 20 6 2.0409 -0.7228 -1.2485 21 1 1.6972 -1.7571 -1.2354 22 7 1.5259 -0.0527 -2.4452 23 6 1.3946 -0.7494 -3.6169 24 1 1.6702 -1.7927 -3.6585 25 6 0.9062 -0.1147 -4.7507 26 7 0.5698 1.1568 -4.6997 27 14 0.7264 -1.0651 -6.3487 28 1 -0.2053 -2.2035 -6.1455 29 1 0.1883 -0.1664 -7.4013 30 1 2.0537 -1.5809 -6.7699 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8894 33 1 -0.3633 0.5128 -0.8906 34 1 1.6096 -1.7284 1.2984 35 1 1.7636 -0.1663 2.1431 36 1 6.1330 0.0581 1.2126 37 1 6.0594 -1.5486 1.9751 38 1 6.8457 2.0872 2.7172 39 1 5.1900 -2.1300 4.9962 40 1 6.5422 -2.6940 3.9814 41 1 6.6748 -3.3948 6.4366 42 1 8.1006 -2.5206 5.8269 43 1 7.2474 -1.7242 8.0918 44 1 5.7817 -1.1543 7.2584 45 1 8.6562 -0.2423 6.7838 46 1 7.2961 0.7324 7.3972 47 1 5.1902 -1.3227 0.0128 48 1 3.8409 -2.4812 -0.0861 49 1 3.9154 0.3402 -1.2546 50 1 3.9335 -1.1883 -2.1677 51 1 1.2780 0.8843 -2.4077 52 1 0.2288 1.6004 -5.4921 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036117873.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:31 Heat of formation + Delta-G solvation = 7.678234 kcal Electronic energy + Delta-G solvation = -31106.087733 eV Core-core repulsion = 27105.292568 eV Total energy + Delta-G solvation = -4000.795165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.32356 -41.28352 -39.09282 -37.50073 -36.22782 -35.29489 -34.42137 -33.05211 -31.44229 -31.02445 -29.85138 -29.26217 -27.28305 -26.45065 -24.52453 -24.35189 -23.11200 -22.88733 -22.20715 -21.18570 -20.30268 -19.73546 -19.05017 -18.56791 -17.94084 -16.90691 -16.70665 -16.63017 -16.23602 -15.75040 -15.66593 -15.50105 -15.36554 -14.96540 -14.77906 -14.65376 -14.55127 -14.40811 -14.14894 -13.97548 -13.63812 -13.43419 -13.26186 -13.17098 -12.94781 -12.83095 -12.81072 -12.75574 -12.48341 -12.20434 -12.05078 -11.87078 -11.81670 -11.76234 -11.73000 -11.66935 -11.30133 -11.16427 -10.85453 -10.76945 -10.38277 -9.74939 -9.02311 -8.96032 -7.90651 -5.18182 0.95033 1.39700 1.49314 1.50926 1.56915 1.62971 2.05340 2.16798 2.58369 3.28859 3.42996 3.52278 3.67116 3.75450 3.79945 3.82037 3.95997 3.99416 4.00785 4.06109 4.10070 4.23914 4.28473 4.37499 4.38968 4.48510 4.58217 4.64317 4.64792 4.72060 4.75595 4.77704 4.82061 4.82503 4.96943 4.99808 5.03843 5.11536 5.15205 5.18530 5.27578 5.29243 5.39303 5.45676 5.49053 5.49185 5.55766 5.63106 5.87475 6.17488 6.30364 6.33411 6.97315 7.14233 7.37218 8.14048 8.36079 9.32637 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023879 B = 0.002136 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.287591 B =13107.667598 C =13221.953343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 H 0.051 0.949 4 C 0.129 3.871 5 N -0.599 5.599 6 C 0.498 3.502 7 O -0.575 6.575 8 C 0.086 3.914 9 N -0.436 5.436 10 C 0.171 3.829 11 N -0.524 5.524 12 C -0.033 4.033 13 C -0.018 4.018 14 C -0.042 4.042 15 C -0.107 4.107 16 C -0.115 4.115 17 C -0.032 4.032 18 C 0.111 3.889 19 C -0.145 4.145 20 C 0.178 3.822 21 H 0.050 0.950 22 N -0.733 5.733 23 C -0.228 4.228 24 H 0.080 0.920 25 C -0.079 4.079 26 N -0.972 5.972 27 Si 0.967 3.033 28 H -0.280 1.280 29 H -0.303 1.303 30 H -0.276 1.276 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.224 0.776 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.051 0.949 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.116 0.884 48 H 0.094 0.906 49 H 0.047 0.953 50 H 0.071 0.929 51 H 0.369 0.631 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.570 -11.015 19.227 26.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.119 4.119 3 H 0.069 0.931 4 C 0.006 3.994 5 N -0.332 5.332 6 C 0.285 3.715 7 O -0.454 6.454 8 C -0.039 4.039 9 N -0.118 5.118 10 C -0.110 4.110 11 N -0.243 5.243 12 C -0.161 4.161 13 C -0.133 4.133 14 C -0.081 4.081 15 C -0.145 4.145 16 C -0.153 4.153 17 C -0.070 4.070 18 C -0.011 4.011 19 C -0.186 4.186 20 C 0.069 3.931 21 H 0.068 0.932 22 N -0.372 5.372 23 C -0.360 4.360 24 H 0.098 0.902 25 C -0.271 4.271 26 N -0.623 5.623 27 Si 0.797 3.203 28 H -0.206 1.206 29 H -0.230 1.230 30 H -0.203 1.203 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.172 0.828 37 H 0.172 0.828 38 H 0.240 0.760 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.111 0.889 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.134 0.866 48 H 0.112 0.888 49 H 0.066 0.934 50 H 0.089 0.911 51 H 0.201 0.799 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.589 -10.257 19.810 26.655 hybrid contribution -1.181 0.250 -1.896 2.248 sum 13.408 -10.007 17.914 24.512 Atomic orbital electron populations 1.21584 0.94350 1.02013 1.01014 1.21677 0.96421 0.99021 0.94771 0.93092 1.21653 0.79088 1.01271 0.97399 1.48205 1.06815 1.59851 1.18278 1.21162 0.90259 0.77553 0.82477 1.90759 1.75871 1.46031 1.32765 1.22035 0.88967 1.05414 0.87470 1.44728 1.44312 1.11344 1.11399 1.25415 1.01385 0.87392 0.96777 1.69913 1.23188 1.25868 1.05294 1.20960 1.06773 0.89946 0.98457 1.21319 1.06823 0.98286 0.86865 1.20207 1.00409 0.87563 0.99883 1.21565 1.00661 0.99027 0.93264 1.21614 1.00059 0.94045 0.99578 1.19990 1.00531 0.98038 0.88480 1.22046 0.99299 0.97953 0.81796 1.22490 0.97946 1.00342 0.97785 1.20454 0.92164 0.95288 0.85153 0.93236 1.42610 1.76952 1.10832 1.06803 1.19557 1.33632 0.94433 0.88410 0.90229 1.25498 1.03296 0.96900 1.01357 1.69817 1.52046 1.11142 1.29276 0.85300 0.77945 0.77306 0.79748 1.20597 1.23004 1.20255 0.92195 0.92131 0.94152 0.89579 0.90493 0.82752 0.82842 0.75989 0.91560 0.89059 0.88927 0.90835 0.88945 0.93004 0.90137 0.91743 0.86621 0.88813 0.93369 0.91056 0.79915 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.03 71.98 0.65 -3.44 16 2 C -0.10 -2.97 2.47 -10.57 -0.03 -2.99 16 3 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 4 C 0.13 3.17 5.75 86.51 0.50 3.67 16 5 N -0.60 -12.49 2.97 -818.07 -2.43 -14.92 16 6 C 0.50 11.15 7.77 87.66 0.68 11.83 16 7 O -0.57 -18.63 15.84 -3.02 -0.05 -18.67 16 8 C 0.09 1.23 4.83 85.63 0.41 1.64 16 9 N -0.44 -9.23 2.23 -518.56 -1.16 -10.39 16 10 C 0.17 4.15 12.57 180.10 2.26 6.41 16 11 N -0.52 -15.36 11.25 -187.90 -2.11 -17.47 16 12 C -0.03 -0.84 6.98 41.61 0.29 -0.55 16 13 C -0.02 -0.39 6.73 41.14 0.28 -0.12 16 14 C -0.04 -0.66 6.06 29.97 0.18 -0.47 16 15 C -0.11 -1.26 5.92 30.80 0.18 -1.07 16 16 C -0.12 -1.63 5.90 30.79 0.18 -1.45 16 17 C -0.03 -0.63 6.30 30.03 0.19 -0.44 16 18 C 0.11 1.81 6.34 86.36 0.55 2.36 16 19 C -0.14 -3.87 5.66 30.67 0.17 -3.70 16 20 C 0.18 5.96 2.19 45.02 0.10 6.06 16 21 H 0.05 1.67 8.08 -2.39 -0.02 1.65 16 22 N -0.73 -33.65 4.41 -322.82 -1.42 -35.07 16 23 C -0.23 -11.67 9.93 84.03 0.83 -10.83 16 24 H 0.08 3.83 7.83 -2.92 -0.02 3.80 16 25 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 26 N -0.97 -57.80 13.06 21.65 0.28 -57.52 16 27 Si 0.97 44.21 29.55 68.60 2.03 46.23 16 28 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 29 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 30 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.04 1.53 7.36 -2.39 -0.02 1.51 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 2.13 7.00 -2.39 -0.02 2.11 16 36 H 0.15 1.34 7.68 -2.39 -0.02 1.32 16 37 H 0.15 1.12 7.76 -2.39 -0.02 1.10 16 38 H 0.22 3.97 8.06 -2.91 -0.02 3.94 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 40 H 0.09 0.99 7.99 -2.39 -0.02 0.97 16 41 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 43 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.05 0.88 8.12 -2.39 -0.02 0.86 16 45 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.12 1.00 5.93 -2.39 -0.01 0.99 16 48 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 50 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.37 19.00 7.50 -92.71 -0.70 18.31 16 52 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -76.55 407.98 3.26 -73.29 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.21 Total: 31.45 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 7.90 Total: 3.08 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -6.84 Total: -135.37 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.05 Total: -18.67 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -76.55 3.26 -73.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036117873.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.972 kcal (2) G-P(sol) polarization free energy of solvation -76.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds