Wall clock time and date at job start Wed Apr 1 2020 04:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52699 * 2 1 4 4 C 1.53196 * 109.48804 * 239.90760 * 2 1 3 5 5 N 1.46924 * 108.76800 * 185.40124 * 4 2 1 6 6 C 1.34773 * 120.63215 * 233.60116 * 5 4 2 7 7 O 1.21282 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.46502 * 109.46911 * 179.97438 * 8 6 5 10 10 C 1.35312 * 126.49832 * 265.02102 * 9 8 6 11 11 N 1.30757 * 108.76165 * 179.97438 * 10 9 8 12 12 C 1.33566 * 109.15116 * 359.97438 * 11 10 9 13 13 C 1.35038 * 107.97955 * 359.78089 * 12 11 10 14 14 C 1.50651 * 124.45503 * 180.11588 * 13 12 11 15 15 C 1.53401 * 108.38161 * 343.80293 * 14 13 12 16 16 C 1.53123 * 109.43974 * 49.64655 * 15 14 13 17 17 C 1.50867 * 128.03497 * 180.12558 * 12 11 10 18 18 C 1.46932 * 118.73828 * 53.61710 * 5 4 2 19 19 C 1.53196 * 108.77384 * 306.39467 * 18 5 4 20 20 C 1.53036 * 109.31536 * 54.63418 * 19 18 5 21 21 H 1.09007 * 109.46211 * 58.63452 * 20 19 18 22 22 N 1.46496 * 109.46261 * 178.61527 * 20 19 18 23 23 C 1.36945 * 119.99718 * 275.02605 * 22 20 19 24 24 H 1.07997 * 119.99756 * 359.97438 * 23 22 20 25 25 C 1.38805 * 119.99878 * 179.97438 * 23 22 20 26 26 N 1.31624 * 120.00257 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99929 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47187 * 179.97438 * 27 25 23 29 29 H 1.48494 * 109.47141 * 300.00154 * 27 25 23 30 30 H 1.48498 * 109.47018 * 60.00200 * 27 25 23 31 31 H 1.09002 * 109.47271 * 299.92312 * 1 2 3 32 32 H 1.09001 * 109.46821 * 59.91874 * 1 2 3 33 33 H 1.08993 * 109.47267 * 179.91522 * 1 2 3 34 34 H 1.09005 * 109.57902 * 65.62432 * 4 2 1 35 35 H 1.08993 * 109.72026 * 305.26324 * 4 2 1 36 36 H 1.08990 * 109.47106 * 299.99661 * 8 6 5 37 37 H 1.09007 * 109.46881 * 59.99892 * 8 6 5 38 38 H 1.07998 * 125.61457 * 0.02562 * 10 9 8 39 39 H 1.08998 * 109.68104 * 103.52905 * 14 13 12 40 40 H 1.09000 * 109.68014 * 224.08180 * 14 13 12 41 41 H 1.09004 * 109.47358 * 169.63836 * 15 14 13 42 42 H 1.09001 * 109.47721 * 289.64913 * 15 14 13 43 43 H 1.09002 * 109.45619 * 49.99667 * 16 15 14 44 44 H 1.09003 * 109.45970 * 169.95531 * 16 15 14 45 45 H 1.08997 * 109.67715 * 283.04446 * 17 12 11 46 46 H 1.09009 * 109.67206 * 43.58121 * 17 12 11 47 47 H 1.08990 * 109.58621 * 186.60591 * 18 5 4 48 48 H 1.09004 * 109.69937 * 66.25035 * 18 5 4 49 49 H 1.08996 * 109.49437 * 294.68012 * 19 18 5 50 50 H 1.09000 * 109.52019 * 174.60075 * 19 18 5 51 51 H 0.96996 * 120.00499 * 95.02336 * 22 20 19 52 52 H 0.97001 * 119.99885 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0410 -0.7241 -1.2495 5 7 3.5043 -0.8292 -1.1697 6 6 4.2807 -0.3864 -2.1785 7 8 3.7725 0.1049 -3.1640 8 6 5.7802 -0.5017 -2.0818 9 7 6.3913 0.0454 -3.2957 10 6 6.7673 -0.6525 -4.3923 11 7 7.2715 0.1784 -5.2671 12 6 7.2349 1.4164 -4.7673 13 6 6.6825 1.3530 -3.5367 14 6 6.4606 2.5428 -2.6397 15 6 7.3099 3.7082 -3.1629 16 6 7.0722 3.8772 -4.6661 17 6 7.7034 2.6952 -5.4164 18 6 4.1053 -1.4265 0.0307 19 6 3.5707 -0.6948 1.2659 20 6 2.0408 -0.7231 1.2484 21 1 1.6968 -1.7574 1.2352 22 7 1.5264 -0.0529 2.4453 23 6 1.3957 -0.7494 3.6171 24 1 1.6715 -1.7927 3.6588 25 6 0.9089 -0.1143 4.7513 26 7 0.5724 1.1572 4.7004 27 14 0.7300 -1.0644 6.3496 28 1 0.1936 -0.1652 7.4027 29 1 -0.2026 -2.2022 6.1474 30 1 2.0574 -1.5810 6.7696 31 1 -0.3634 0.5126 0.8907 32 1 -0.3633 0.5151 -0.8893 33 1 -0.3633 -1.0276 -0.0015 34 1 1.7633 -0.1583 -2.1389 35 1 1.6053 -1.7219 -1.3005 36 1 6.1323 0.0561 -1.2142 37 1 6.0579 -1.5506 -1.9766 38 1 6.6667 -1.7197 -4.5236 39 1 5.4069 2.8213 -2.6532 40 1 6.7628 2.2965 -1.6217 41 1 7.0277 4.6248 -2.6450 42 1 8.3644 3.4990 -2.9829 43 1 6.0006 3.9088 -4.8630 44 1 7.5308 4.8066 -5.0040 45 1 8.7906 2.7547 -5.3675 46 1 7.3806 2.7179 -6.4574 47 1 5.1894 -1.3242 -0.0139 48 1 3.8398 -2.4822 0.0880 49 1 3.9157 0.3391 1.2538 50 1 3.9335 -1.1888 2.1673 51 1 1.2785 0.8841 2.4078 52 1 0.2319 1.6009 5.4929 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036117878.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:46 Heat of formation + Delta-G solvation = 26.057986 kcal Electronic energy + Delta-G solvation = -31282.288657 eV Core-core repulsion = 27282.290498 eV Total energy + Delta-G solvation = -3999.998159 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.46493 -40.24614 -37.88014 -36.76435 -34.81105 -34.37288 -32.96371 -31.61673 -30.63430 -29.48769 -29.04780 -28.32836 -26.10797 -24.97050 -23.67788 -22.97878 -22.14738 -21.82190 -21.23895 -20.04570 -19.21736 -18.94061 -17.67538 -17.16654 -17.03441 -15.88537 -15.69812 -15.38838 -15.04407 -14.89753 -14.54893 -14.22878 -14.03539 -13.90273 -13.85323 -13.63004 -13.42811 -13.40208 -13.21093 -12.67180 -12.62497 -12.45996 -12.33650 -12.06460 -11.89653 -11.72615 -11.29863 -11.11229 -11.05882 -11.04784 -11.02479 -10.91298 -10.76952 -10.53055 -10.31154 -10.29900 -9.88497 -9.85732 -9.73427 -9.45871 -8.99922 -8.69401 -8.14406 -7.06889 -5.86279 -3.15761 1.84103 2.33067 2.43802 2.96058 3.08892 3.35990 3.41056 3.42347 4.15084 4.28856 4.32557 4.49155 4.50726 4.59694 4.68560 4.71897 4.83820 4.96407 5.09889 5.12688 5.12990 5.18074 5.29479 5.38446 5.39947 5.41182 5.47763 5.55033 5.56719 5.64313 5.70571 5.78704 5.81365 5.87573 5.95122 6.00664 6.02490 6.13979 6.15574 6.22554 6.30786 6.32023 6.36915 6.47391 6.67503 6.70957 6.80701 6.91588 7.04612 7.25071 7.59064 7.92572 8.03305 8.31692 9.43203 9.99620 10.34220 11.35925 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017497 B = 0.002354 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.878985 B =11892.794857 C =12298.578990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.069 0.931 4 C 0.121 3.879 5 N -0.601 5.601 6 C 0.497 3.503 7 O -0.528 6.528 8 C 0.086 3.914 9 N -0.435 5.435 10 C 0.181 3.819 11 N -0.485 5.485 12 C -0.003 4.003 13 C -0.008 4.008 14 C -0.045 4.045 15 C -0.112 4.112 16 C -0.119 4.119 17 C -0.030 4.030 18 C 0.104 3.896 19 C -0.153 4.153 20 C 0.184 3.816 21 H 0.049 0.951 22 N -0.720 5.720 23 C -0.242 4.242 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.291 1.291 29 H -0.286 1.286 30 H -0.286 1.286 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.202 0.798 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.060 0.940 50 H 0.078 0.922 51 H 0.384 0.616 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.067 -0.944 -15.396 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.001 4.001 5 N -0.334 5.334 6 C 0.282 3.718 7 O -0.404 6.404 8 C -0.041 4.041 9 N -0.117 5.117 10 C -0.100 4.100 11 N -0.202 5.202 12 C -0.132 4.132 13 C -0.123 4.123 14 C -0.083 4.083 15 C -0.150 4.150 16 C -0.157 4.157 17 C -0.069 4.069 18 C -0.019 4.019 19 C -0.194 4.194 20 C 0.074 3.926 21 H 0.067 0.933 22 N -0.360 5.360 23 C -0.373 4.373 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.579 5.579 27 Si 0.737 3.263 28 H -0.217 1.217 29 H -0.213 1.213 30 H -0.213 1.213 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.219 0.781 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.079 0.921 50 H 0.097 0.903 51 H 0.218 0.782 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.008 -1.081 -16.415 20.972 hybrid contribution -0.589 -0.331 2.013 2.123 sum 12.419 -1.412 -14.403 19.070 Atomic orbital electron populations 1.21659 0.93969 1.01842 1.01955 1.21743 0.96730 0.99981 0.94466 0.91265 1.21754 0.77829 1.01037 0.99530 1.48165 1.07442 1.60048 1.17791 1.20587 0.88852 0.78940 0.83389 1.90768 1.74716 1.44011 1.30868 1.21744 0.91931 1.02696 0.87721 1.44574 1.45347 1.07196 1.14554 1.24885 1.02846 0.99223 0.83036 1.69935 1.20529 1.00735 1.29006 1.20386 1.06315 0.93670 0.92814 1.20852 1.07160 0.85016 0.99267 1.20109 1.01196 0.90500 0.96534 1.21537 0.99964 0.97307 0.96161 1.21653 1.01525 0.97666 0.94854 1.19933 0.99731 0.88425 0.98768 1.21950 0.97154 0.97917 0.84928 1.22714 1.00677 1.00367 0.95666 1.20180 0.90196 0.95775 0.86476 0.93346 1.42394 1.76466 1.11418 1.05725 1.19150 1.36379 0.94061 0.87682 0.91282 1.24737 1.01884 0.96008 0.98087 1.69646 1.49690 1.09483 1.29096 0.86299 0.77758 0.78747 0.83539 1.21705 1.21263 1.21302 0.90644 0.93797 0.92993 0.89386 0.91332 0.86229 0.85842 0.78129 0.90288 0.91140 0.90958 0.91466 0.91463 0.91168 0.90881 0.90789 0.90822 0.90888 0.92129 0.90303 0.78187 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.03 37.15 0.34 -1.77 16 2 C -0.11 -1.66 2.46 -90.50 -0.22 -1.88 16 3 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.12 1.60 5.72 -3.71 -0.02 1.58 16 5 N -0.60 -7.19 2.97 -172.76 -0.51 -7.71 16 6 C 0.50 6.23 7.77 -10.98 -0.09 6.15 16 7 O -0.53 -8.82 15.83 5.56 0.09 -8.73 16 8 C 0.09 0.78 4.83 -5.19 -0.03 0.75 16 9 N -0.43 -5.07 2.23 -115.25 -0.26 -5.32 16 10 C 0.18 2.18 12.57 -89.91 -1.13 1.05 16 11 N -0.48 -6.97 11.25 -10.74 -0.12 -7.09 16 12 C 0.00 -0.03 6.98 -82.89 -0.58 -0.61 16 13 C -0.01 -0.10 6.72 -81.85 -0.55 -0.65 16 14 C -0.05 -0.47 6.06 -27.70 -0.17 -0.63 16 15 C -0.11 -0.94 5.91 -26.46 -0.16 -1.10 16 16 C -0.12 -1.03 5.91 -26.37 -0.16 -1.19 16 17 C -0.03 -0.31 6.30 -27.50 -0.17 -0.49 16 18 C 0.10 1.07 6.34 -3.70 -0.02 1.05 16 19 C -0.15 -2.22 5.66 -26.61 -0.15 -2.37 16 20 C 0.18 3.18 2.19 -67.89 -0.15 3.03 16 21 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 22 N -0.72 -16.30 4.41 -53.38 -0.24 -16.54 16 23 C -0.24 -6.18 9.93 -15.06 -0.15 -6.33 16 24 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 25 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 26 N -0.93 -26.82 13.06 55.49 0.72 -26.10 16 27 Si 0.91 21.34 29.55 -169.99 -5.02 16.31 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 29 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 30 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 31 H 0.07 1.38 7.36 -51.93 -0.38 1.00 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.12 0.90 7.52 -51.93 -0.39 0.51 16 37 H 0.12 0.72 7.94 -51.93 -0.41 0.31 16 38 H 0.20 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.65 8.00 -51.93 -0.42 0.23 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 43 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 47 H 0.07 0.55 5.93 -51.93 -0.31 0.24 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 51 H 0.38 9.50 7.50 -40.82 -0.31 9.19 16 52 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 LS Contribution 407.97 15.07 6.15 6.15 Total: -1.00 -33.23 407.97 -11.57 -44.81 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -8.88 Total: 8.00 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -3.50 Total: -3.79 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -0.40 Total: -62.75 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.23 -11.57 -44.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036117878.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.864 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds