Wall clock time and date at job start Wed Apr 1 2020 04:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52699 * 2 1 4 4 C 1.53196 * 109.48804 * 239.90760 * 2 1 3 5 5 N 1.46924 * 108.76800 * 185.40124 * 4 2 1 6 6 C 1.34773 * 120.63215 * 233.60116 * 5 4 2 7 7 O 1.21282 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.46502 * 109.46911 * 179.97438 * 8 6 5 10 10 C 1.35312 * 126.49832 * 265.02102 * 9 8 6 11 11 N 1.30757 * 108.76165 * 179.97438 * 10 9 8 12 12 C 1.33566 * 109.15116 * 359.97438 * 11 10 9 13 13 C 1.35038 * 107.97955 * 359.78089 * 12 11 10 14 14 C 1.50651 * 124.45503 * 180.11588 * 13 12 11 15 15 C 1.53401 * 108.38161 * 343.80293 * 14 13 12 16 16 C 1.53123 * 109.43974 * 49.64655 * 15 14 13 17 17 C 1.50867 * 128.03497 * 180.12558 * 12 11 10 18 18 C 1.46932 * 118.73828 * 53.61710 * 5 4 2 19 19 C 1.53196 * 108.77384 * 306.39467 * 18 5 4 20 20 C 1.53036 * 109.31536 * 54.63418 * 19 18 5 21 21 H 1.09007 * 109.46211 * 58.63452 * 20 19 18 22 22 N 1.46496 * 109.46261 * 178.61527 * 20 19 18 23 23 C 1.36945 * 119.99718 * 275.02605 * 22 20 19 24 24 H 1.07997 * 119.99756 * 359.97438 * 23 22 20 25 25 C 1.38805 * 119.99878 * 179.97438 * 23 22 20 26 26 N 1.31624 * 120.00257 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99929 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47187 * 179.97438 * 27 25 23 29 29 H 1.48494 * 109.47141 * 300.00154 * 27 25 23 30 30 H 1.48498 * 109.47018 * 60.00200 * 27 25 23 31 31 H 1.09002 * 109.47271 * 299.92312 * 1 2 3 32 32 H 1.09001 * 109.46821 * 59.91874 * 1 2 3 33 33 H 1.08993 * 109.47267 * 179.91522 * 1 2 3 34 34 H 1.09005 * 109.57902 * 65.62432 * 4 2 1 35 35 H 1.08993 * 109.72026 * 305.26324 * 4 2 1 36 36 H 1.08990 * 109.47106 * 299.99661 * 8 6 5 37 37 H 1.09007 * 109.46881 * 59.99892 * 8 6 5 38 38 H 1.07998 * 125.61457 * 0.02562 * 10 9 8 39 39 H 1.08998 * 109.68104 * 103.52905 * 14 13 12 40 40 H 1.09000 * 109.68014 * 224.08180 * 14 13 12 41 41 H 1.09004 * 109.47358 * 169.63836 * 15 14 13 42 42 H 1.09001 * 109.47721 * 289.64913 * 15 14 13 43 43 H 1.09002 * 109.45619 * 49.99667 * 16 15 14 44 44 H 1.09003 * 109.45970 * 169.95531 * 16 15 14 45 45 H 1.08997 * 109.67715 * 283.04446 * 17 12 11 46 46 H 1.09009 * 109.67206 * 43.58121 * 17 12 11 47 47 H 1.08990 * 109.58621 * 186.60591 * 18 5 4 48 48 H 1.09004 * 109.69937 * 66.25035 * 18 5 4 49 49 H 1.08996 * 109.49437 * 294.68012 * 19 18 5 50 50 H 1.09000 * 109.52019 * 174.60075 * 19 18 5 51 51 H 0.96996 * 120.00499 * 95.02336 * 22 20 19 52 52 H 0.97001 * 119.99885 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0410 -0.7241 -1.2495 5 7 3.5043 -0.8292 -1.1697 6 6 4.2807 -0.3864 -2.1785 7 8 3.7725 0.1049 -3.1640 8 6 5.7802 -0.5017 -2.0818 9 7 6.3913 0.0454 -3.2957 10 6 6.7673 -0.6525 -4.3923 11 7 7.2715 0.1784 -5.2671 12 6 7.2349 1.4164 -4.7673 13 6 6.6825 1.3530 -3.5367 14 6 6.4606 2.5428 -2.6397 15 6 7.3099 3.7082 -3.1629 16 6 7.0722 3.8772 -4.6661 17 6 7.7034 2.6952 -5.4164 18 6 4.1053 -1.4265 0.0307 19 6 3.5707 -0.6948 1.2659 20 6 2.0408 -0.7231 1.2484 21 1 1.6968 -1.7574 1.2352 22 7 1.5264 -0.0529 2.4453 23 6 1.3957 -0.7494 3.6171 24 1 1.6715 -1.7927 3.6588 25 6 0.9089 -0.1143 4.7513 26 7 0.5724 1.1572 4.7004 27 14 0.7300 -1.0644 6.3496 28 1 0.1936 -0.1652 7.4027 29 1 -0.2026 -2.2022 6.1474 30 1 2.0574 -1.5810 6.7696 31 1 -0.3634 0.5126 0.8907 32 1 -0.3633 0.5151 -0.8893 33 1 -0.3633 -1.0276 -0.0015 34 1 1.7633 -0.1583 -2.1389 35 1 1.6053 -1.7219 -1.3005 36 1 6.1323 0.0561 -1.2142 37 1 6.0579 -1.5506 -1.9766 38 1 6.6667 -1.7197 -4.5236 39 1 5.4069 2.8213 -2.6532 40 1 6.7628 2.2965 -1.6217 41 1 7.0277 4.6248 -2.6450 42 1 8.3644 3.4990 -2.9829 43 1 6.0006 3.9088 -4.8630 44 1 7.5308 4.8066 -5.0040 45 1 8.7906 2.7547 -5.3675 46 1 7.3806 2.7179 -6.4574 47 1 5.1894 -1.3242 -0.0139 48 1 3.8398 -2.4822 0.0880 49 1 3.9157 0.3391 1.2538 50 1 3.9335 -1.1888 2.1673 51 1 1.2785 0.8841 2.4078 52 1 0.2319 1.6009 5.4929 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036117878.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:45 Heat of formation + Delta-G solvation = 7.816921 kcal Electronic energy + Delta-G solvation = -31283.079649 eV Core-core repulsion = 27282.290498 eV Total energy + Delta-G solvation = -4000.789151 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.32204 -41.28949 -39.10114 -37.51927 -36.22639 -35.29261 -34.42993 -33.06221 -31.45344 -31.02184 -29.86018 -29.26448 -27.28600 -26.45557 -24.54020 -24.35270 -23.11203 -22.91073 -22.18075 -21.22267 -20.26798 -19.76932 -19.04920 -18.56728 -17.93757 -16.90548 -16.70982 -16.63353 -16.26233 -15.73391 -15.67626 -15.46997 -15.35921 -15.00193 -14.81600 -14.76229 -14.45914 -14.31659 -14.22926 -14.00458 -13.62960 -13.44321 -13.24626 -13.17125 -12.95874 -12.85148 -12.82278 -12.75877 -12.48745 -12.20251 -12.05506 -11.86795 -11.84274 -11.78780 -11.74471 -11.66988 -11.30441 -11.16298 -10.85374 -10.77600 -10.37732 -9.75236 -9.03024 -8.95756 -7.90528 -5.17949 0.95173 1.39525 1.49500 1.50970 1.56901 1.63370 2.05374 2.17616 2.58485 3.28957 3.43207 3.50965 3.67556 3.75350 3.80015 3.82123 3.95256 3.97444 3.99133 4.05607 4.10010 4.21323 4.28298 4.36502 4.38732 4.48384 4.56241 4.61764 4.64294 4.69375 4.75627 4.78176 4.80011 4.82613 4.96692 4.99777 5.00960 5.09446 5.14743 5.16912 5.25325 5.29038 5.39222 5.42892 5.47772 5.49002 5.55867 5.62862 5.85390 6.18829 6.30692 6.33993 6.97267 7.14211 7.37583 8.14259 8.36353 9.32829 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017497 B = 0.002354 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.878985 B =11892.794857 C =12298.578990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 H 0.051 0.949 4 C 0.129 3.871 5 N -0.599 5.599 6 C 0.498 3.502 7 O -0.575 6.575 8 C 0.087 3.913 9 N -0.437 5.437 10 C 0.178 3.822 11 N -0.524 5.524 12 C -0.029 4.029 13 C -0.022 4.022 14 C -0.044 4.044 15 C -0.108 4.108 16 C -0.115 4.115 17 C -0.031 4.031 18 C 0.111 3.889 19 C -0.145 4.145 20 C 0.178 3.822 21 H 0.049 0.951 22 N -0.732 5.732 23 C -0.229 4.229 24 H 0.079 0.921 25 C -0.077 4.077 26 N -0.972 5.972 27 Si 0.966 3.034 28 H -0.303 1.303 29 H -0.280 1.280 30 H -0.277 1.277 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.141 0.859 37 H 0.167 0.833 38 H 0.233 0.767 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.115 0.885 48 H 0.094 0.906 49 H 0.047 0.953 50 H 0.071 0.929 51 H 0.370 0.630 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.018 -2.853 -15.520 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.119 4.119 3 H 0.070 0.930 4 C 0.006 3.994 5 N -0.331 5.331 6 C 0.285 3.715 7 O -0.454 6.454 8 C -0.039 4.039 9 N -0.119 5.119 10 C -0.103 4.103 11 N -0.242 5.242 12 C -0.157 4.157 13 C -0.137 4.137 14 C -0.082 4.082 15 C -0.146 4.146 16 C -0.153 4.153 17 C -0.070 4.070 18 C -0.011 4.011 19 C -0.186 4.186 20 C 0.070 3.930 21 H 0.067 0.933 22 N -0.371 5.371 23 C -0.361 4.361 24 H 0.097 0.903 25 C -0.269 4.269 26 N -0.623 5.623 27 Si 0.796 3.204 28 H -0.230 1.230 29 H -0.206 1.206 30 H -0.203 1.203 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.159 0.841 37 H 0.185 0.815 38 H 0.249 0.751 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.111 0.889 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.133 0.867 48 H 0.112 0.888 49 H 0.066 0.934 50 H 0.089 0.911 51 H 0.201 0.799 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.995 -3.042 -16.554 22.542 hybrid contribution -1.224 0.219 1.952 2.314 sum 13.771 -2.823 -14.602 20.269 Atomic orbital electron populations 1.21581 0.94308 1.02001 1.01043 1.21595 0.96446 0.99058 0.94756 0.93050 1.21560 0.79141 1.01299 0.97449 1.48199 1.06813 1.59828 1.18294 1.21175 0.90280 0.77541 0.82482 1.90760 1.75867 1.46000 1.32795 1.22036 0.88878 1.05563 0.87396 1.44730 1.45057 1.06911 1.15208 1.25544 1.01685 1.00382 0.82694 1.69913 1.22170 1.01645 1.30461 1.20905 1.06978 0.94253 0.93583 1.21207 1.06986 0.86002 0.99488 1.20161 1.00415 0.90574 0.97094 1.21548 1.00051 0.97166 0.95838 1.21632 1.00529 0.97980 0.95117 1.20020 1.00373 0.88136 0.98422 1.22048 0.99281 0.97995 0.81817 1.22489 0.97980 1.00317 0.97773 1.20444 0.92133 0.95262 0.85167 0.93299 1.42595 1.76961 1.10826 1.06741 1.19551 1.33696 0.94410 0.88394 0.90292 1.25474 1.03278 0.96868 1.01284 1.69811 1.52054 1.11127 1.29280 0.85316 0.77937 0.77324 0.79821 1.22956 1.20650 1.20277 0.94089 0.92123 0.92245 0.90529 0.89678 0.84092 0.81518 0.75084 0.92171 0.89777 0.89509 0.90662 0.93080 0.88922 0.89901 0.91512 0.86652 0.88778 0.93401 0.91067 0.79891 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 9.03 71.98 0.65 -3.41 16 2 C -0.10 -2.95 2.46 -10.71 -0.03 -2.97 16 3 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 4 C 0.13 3.18 5.72 86.36 0.49 3.67 16 5 N -0.60 -12.55 2.97 -818.88 -2.43 -14.99 16 6 C 0.50 11.17 7.77 87.66 0.68 11.86 16 7 O -0.57 -18.65 15.83 -3.04 -0.05 -18.70 16 8 C 0.09 1.23 4.83 85.63 0.41 1.65 16 9 N -0.44 -9.19 2.23 -518.54 -1.16 -10.35 16 10 C 0.18 3.96 12.57 180.10 2.26 6.22 16 11 N -0.52 -14.74 11.25 -187.89 -2.11 -16.86 16 12 C -0.03 -0.75 6.98 41.61 0.29 -0.46 16 13 C -0.02 -0.51 6.72 41.14 0.28 -0.24 16 14 C -0.04 -0.86 6.06 29.97 0.18 -0.68 16 15 C -0.11 -1.66 5.91 30.77 0.18 -1.47 16 16 C -0.11 -1.89 5.91 30.83 0.18 -1.71 16 17 C -0.03 -0.64 6.30 30.10 0.19 -0.45 16 18 C 0.11 1.82 6.34 86.36 0.55 2.36 16 19 C -0.14 -3.87 5.66 30.67 0.17 -3.69 16 20 C 0.18 5.96 2.19 45.02 0.10 6.06 16 21 H 0.05 1.65 8.08 -2.38 -0.02 1.63 16 22 N -0.73 -33.45 4.41 -322.81 -1.42 -34.87 16 23 C -0.23 -11.64 9.93 84.03 0.83 -10.81 16 24 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 25 C -0.08 -4.20 5.50 84.86 0.47 -3.73 16 26 N -0.97 -57.52 13.06 21.65 0.28 -57.24 16 27 Si 0.97 44.07 29.55 68.60 2.03 46.10 16 28 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 29 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 30 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 31 H 0.04 1.54 7.36 -2.39 -0.02 1.53 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.13 7.01 -2.38 -0.02 2.11 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.14 1.46 7.52 -2.39 -0.02 1.45 16 37 H 0.17 0.94 7.94 -2.38 -0.02 0.92 16 38 H 0.23 3.22 8.06 -2.91 -0.02 3.20 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.36 8.00 -2.39 -0.02 1.35 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 1.05 8.11 -2.39 -0.02 1.03 16 43 H 0.05 1.00 8.11 -2.39 -0.02 0.98 16 44 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 47 H 0.12 1.02 5.93 -2.39 -0.01 1.00 16 48 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 49 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.37 18.89 7.50 -92.71 -0.70 18.20 16 52 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -75.80 407.97 3.25 -72.56 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.21 Total: 32.15 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 7.90 Total: 2.20 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -6.84 Total: -134.30 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.05 Total: -18.70 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -75.80 3.25 -72.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036117878.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.374 kcal (2) G-P(sol) polarization free energy of solvation -75.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds