Wall clock time and date at job start Wed Apr 1 2020 04:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.49636 * 2 1 4 4 C 1.52761 * 109.58971 * 240.04306 * 2 1 3 5 5 N 1.46930 * 109.00770 * 185.53731 * 4 2 1 6 6 C 1.34773 * 120.63215 * 233.58803 * 5 4 2 7 7 O 1.21572 * 119.99758 * 184.49672 * 6 5 4 8 8 C 1.47713 * 119.99963 * 4.22163 * 6 5 4 9 9 N 1.32204 * 126.67693 * 354.74112 * 8 6 5 10 10 N 1.28844 * 110.14965 * 179.97438 * 9 8 6 11 11 C 1.46499 * 124.97531 * 179.97438 * 10 9 8 12 12 C 1.34311 * 110.04337 * 359.94577 * 10 9 8 13 13 C 1.35584 * 107.21271 * 359.84049 * 12 10 9 14 14 C 1.50383 * 124.61469 * 179.39086 * 13 12 10 15 15 C 1.53481 * 108.34887 * 344.34055 * 14 13 12 16 16 C 1.53106 * 109.50658 * 49.25029 * 15 14 13 17 17 C 1.50711 * 128.90573 * 180.20491 * 12 10 9 18 18 C 1.46932 * 118.73658 * 53.31093 * 5 4 2 19 19 C 1.53196 * 108.77554 * 306.64613 * 18 5 4 20 20 C 1.53035 * 109.31435 * 54.63442 * 19 18 5 21 21 H 1.08997 * 109.45998 * 58.65303 * 20 19 18 22 22 N 1.46495 * 109.45962 * 178.61430 * 20 19 18 23 23 C 1.36934 * 120.00223 * 274.99953 * 22 20 19 24 24 H 1.08001 * 119.99845 * 0.02562 * 23 22 20 25 25 C 1.38813 * 120.00054 * 180.02562 * 23 22 20 26 26 N 1.31620 * 120.00174 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99860 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47342 * 0.02562 * 27 25 23 29 29 H 1.48506 * 109.46960 * 120.00142 * 27 25 23 30 30 H 1.48493 * 109.47442 * 239.99831 * 27 25 23 31 31 H 1.08995 * 109.47138 * 299.93427 * 1 2 3 32 32 H 1.08999 * 109.46898 * 59.93699 * 1 2 3 33 33 H 1.09007 * 109.46986 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.51184 * 65.65911 * 4 2 1 35 35 H 1.09003 * 109.43756 * 305.36979 * 4 2 1 36 36 H 1.09000 * 109.47042 * 90.02879 * 11 10 9 37 37 H 1.09002 * 109.46689 * 210.02198 * 11 10 9 38 38 H 1.08994 * 109.47883 * 330.02481 * 11 10 9 39 39 H 1.09003 * 109.86302 * 224.50812 * 14 13 12 40 40 H 1.09000 * 109.47517 * 103.94658 * 14 13 12 41 41 H 1.08995 * 109.46721 * 289.23736 * 15 14 13 42 42 H 1.09003 * 109.46509 * 169.25957 * 15 14 13 43 43 H 1.08998 * 109.44326 * 169.88799 * 16 15 14 44 44 H 1.08999 * 109.41226 * 49.96847 * 16 15 14 45 45 H 1.09002 * 109.69092 * 283.01025 * 17 12 10 46 46 H 1.09000 * 109.68878 * 43.55474 * 17 12 10 47 47 H 1.09001 * 109.58802 * 66.43270 * 18 5 4 48 48 H 1.09002 * 109.58401 * 186.85898 * 18 5 4 49 49 H 1.08997 * 109.49912 * 174.58903 * 19 18 5 50 50 H 1.08999 * 109.49549 * 294.68318 * 19 18 5 51 51 H 0.97002 * 120.00120 * 95.00504 * 22 20 19 52 52 H 0.97002 * 120.00004 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0423 -0.7187 -1.2469 5 7 3.5054 -0.8284 -1.1689 6 6 4.2820 -0.3846 -2.1770 7 8 5.4851 -0.5547 -2.1376 8 6 3.6707 0.3029 -3.3327 9 7 2.3789 0.4675 -3.5608 10 7 2.2013 1.1131 -4.6616 11 6 0.8969 1.4719 -5.2236 12 6 3.3874 1.4095 -5.2179 13 6 4.3490 0.9146 -4.4001 14 6 5.8267 1.0173 -4.6593 15 6 6.0337 1.3969 -6.1320 16 6 5.1431 2.5922 -6.4819 17 6 3.6734 2.1532 -6.4971 18 6 4.1060 -1.4256 0.0317 19 6 3.5708 -0.6940 1.2667 20 6 2.0408 -0.7228 1.2486 21 1 1.6972 -1.7571 1.2355 22 7 1.5259 -0.0528 2.4453 23 6 1.3944 -0.7493 3.6169 24 1 1.6708 -1.7925 3.6589 25 6 0.9060 -0.1145 4.7507 26 7 0.5688 1.1567 4.6995 27 14 0.7260 -1.0649 6.3487 28 1 1.1698 -2.4671 6.1435 29 1 1.5624 -0.4302 7.3990 30 1 -0.6965 -1.0528 6.7744 31 1 -0.3633 0.5128 0.8905 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7654 -0.1498 -2.1345 35 1 1.6033 -1.7151 -1.2973 36 1 0.5949 2.4488 -4.8462 37 1 0.9674 1.5084 -6.3107 38 1 0.1579 0.7256 -4.9323 39 1 6.3058 0.0596 -4.4559 40 1 6.2556 1.7870 -4.0177 41 1 5.7707 0.5501 -6.7658 42 1 7.0783 1.6621 -6.2954 43 1 5.4179 2.9738 -7.4652 44 1 5.2799 3.3761 -5.7371 45 1 3.4944 1.4987 -7.3503 46 1 3.0285 3.0293 -6.5646 47 1 3.8387 -2.4809 0.0877 48 1 5.1903 -1.3230 -0.0125 49 1 3.9333 -1.1884 2.1680 50 1 3.9154 0.3400 1.2548 51 1 1.2780 0.8843 2.4078 52 1 0.2272 1.6001 5.4917 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036200892.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:16 Heat of formation + Delta-G solvation = 53.280253 kcal Electronic energy + Delta-G solvation = -31716.030831 eV Core-core repulsion = 27717.213118 eV Total energy + Delta-G solvation = -3998.817713 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.01893 -39.71178 -37.56736 -37.15150 -34.47883 -33.97775 -32.52781 -31.61729 -30.58244 -30.07869 -29.40165 -27.45233 -26.18357 -25.01606 -23.99874 -23.29254 -22.35512 -21.74011 -21.24873 -19.77921 -19.32326 -18.78403 -17.23806 -16.87208 -16.69574 -16.41989 -15.59812 -15.02496 -14.87451 -14.83384 -14.24609 -14.07525 -13.92765 -13.80880 -13.68877 -13.61472 -13.21409 -13.15369 -13.06921 -12.84581 -12.69242 -12.36611 -12.27340 -12.21110 -11.82086 -11.41802 -11.21573 -11.14150 -11.05419 -10.89413 -10.87339 -10.80808 -10.47255 -10.37621 -10.27417 -10.10641 -9.84762 -9.66186 -9.30088 -9.21868 -8.84556 -8.71917 -8.28473 -6.90259 -5.73347 -3.01152 1.51944 1.98013 2.23187 3.23909 3.44984 3.50884 3.52802 3.53385 4.08125 4.20632 4.49326 4.56864 4.61826 4.65984 4.74236 4.87764 4.99579 5.02328 5.10180 5.19034 5.28010 5.30182 5.34788 5.38043 5.48526 5.58028 5.62130 5.67170 5.68917 5.77401 5.82365 5.87132 5.88617 5.91292 6.06413 6.10689 6.14965 6.17973 6.26351 6.41875 6.44350 6.53842 6.54568 6.61420 6.74052 6.82931 6.91855 7.07736 7.16513 7.61863 7.73967 7.85952 8.38490 8.45301 9.56599 10.15174 10.50290 11.49438 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.002565 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.697093 B =10915.498575 C =11694.329907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 H 0.065 0.935 4 C 0.082 3.918 5 N -0.591 5.591 6 C 0.600 3.400 7 O -0.541 6.541 8 C 0.002 3.998 9 N -0.262 5.262 10 N -0.279 5.279 11 C 0.084 3.916 12 C 0.008 3.992 13 C -0.144 4.144 14 C -0.042 4.042 15 C -0.120 4.120 16 C -0.114 4.114 17 C -0.045 4.045 18 C 0.113 3.887 19 C -0.150 4.150 20 C 0.183 3.817 21 H 0.047 0.953 22 N -0.721 5.721 23 C -0.233 4.233 24 H 0.070 0.930 25 C -0.015 4.015 26 N -0.933 5.933 27 Si 0.904 3.096 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.135 0.865 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.058 0.942 51 H 0.383 0.617 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 2.111 -28.059 28.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.127 4.127 3 H 0.084 0.916 4 C -0.042 4.042 5 N -0.323 5.323 6 C 0.386 3.614 7 O -0.417 6.417 8 C -0.156 4.156 9 N -0.097 5.097 10 N -0.065 5.065 11 C -0.056 4.056 12 C -0.118 4.118 13 C -0.154 4.154 14 C -0.081 4.081 15 C -0.158 4.158 16 C -0.152 4.152 17 C -0.084 4.084 18 C -0.009 4.009 19 C -0.191 4.191 20 C 0.073 3.927 21 H 0.065 0.935 22 N -0.361 5.361 23 C -0.365 4.365 24 H 0.088 0.912 25 C -0.211 4.211 26 N -0.582 5.582 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.152 0.848 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.103 0.897 49 H 0.093 0.907 50 H 0.077 0.923 51 H 0.217 0.783 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.493 1.675 -27.489 27.761 hybrid contribution 0.208 0.031 0.891 0.915 sum 3.701 1.706 -26.598 26.909 Atomic orbital electron populations 1.21625 0.94307 1.01577 1.01532 1.21613 0.96353 0.99898 0.94816 0.91645 1.22732 0.78125 1.01610 1.01739 1.47996 1.07669 1.59029 1.17566 1.16983 0.85687 0.77966 0.80773 1.90738 1.13813 1.58257 1.78920 1.21618 0.89371 1.05922 0.98664 1.73506 1.18800 1.15068 1.02344 1.45281 1.06878 1.38913 1.15383 1.22171 0.80966 1.03135 0.99370 1.21075 0.85147 1.05824 0.99763 1.19841 0.96804 1.03932 0.94865 1.19983 0.89612 1.02986 0.95470 1.21662 0.99676 0.97901 0.96532 1.21562 0.92977 0.98589 1.02121 1.20198 0.98135 0.98426 0.91605 1.21744 0.98915 0.96593 0.83696 1.22664 1.00055 1.00448 0.95927 1.20231 0.90475 0.95613 0.86429 0.93527 1.42423 1.76463 1.11381 1.05857 1.19280 1.35311 0.94106 0.87753 0.91205 1.24721 1.02312 0.96037 0.98015 1.69672 1.50318 1.09511 1.28716 0.86153 0.77232 0.78903 0.84142 1.20599 1.21986 1.21990 0.90938 0.94046 0.93177 0.84829 0.92119 0.89586 0.88877 0.88318 0.89672 0.90746 0.91791 0.91209 0.90985 0.91273 0.90129 0.90471 0.91761 0.89660 0.90656 0.92338 0.78305 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.03 37.16 0.34 -1.87 16 2 C -0.11 -1.86 2.44 -90.71 -0.22 -2.08 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.08 1.27 5.58 -3.93 -0.02 1.25 16 5 N -0.59 -9.84 2.98 -174.18 -0.52 -10.36 16 6 C 0.60 10.33 7.70 -12.39 -0.10 10.24 16 7 O -0.54 -10.26 15.19 5.30 0.08 -10.18 16 8 C 0.00 0.04 6.89 -82.99 -0.57 -0.53 16 9 N -0.26 -3.54 8.35 33.28 0.28 -3.27 16 10 N -0.28 -2.90 3.69 -63.97 -0.24 -3.13 16 11 C 0.08 0.46 11.17 59.85 0.67 1.13 16 12 C 0.01 0.08 6.71 -82.45 -0.55 -0.47 16 13 C -0.14 -1.86 5.99 -104.88 -0.63 -2.49 16 14 C -0.04 -0.47 5.59 -27.79 -0.16 -0.63 16 15 C -0.12 -0.92 5.91 -26.43 -0.16 -1.07 16 16 C -0.11 -0.71 5.89 -26.47 -0.16 -0.87 16 17 C -0.04 -0.28 5.81 -27.67 -0.16 -0.44 16 18 C 0.11 1.89 6.42 -3.71 -0.02 1.86 16 19 C -0.15 -2.85 5.66 -26.61 -0.15 -3.00 16 20 C 0.18 3.69 2.20 -67.89 -0.15 3.55 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -17.98 4.41 -53.39 -0.24 -18.21 16 23 C -0.23 -6.44 9.93 -15.06 -0.15 -6.58 16 24 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 25 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 26 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 27 Si 0.90 22.56 29.55 -169.99 -5.02 17.54 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 30 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 31 H 0.07 1.41 7.36 -51.93 -0.38 1.03 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.14 1.99 3.70 -116.92 -0.43 1.56 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.25 7.86 -51.93 -0.41 -0.15 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 1.07 7.59 -51.93 -0.39 0.68 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.48 8.12 -51.93 -0.42 0.05 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.09 1.44 7.03 -51.93 -0.37 1.07 16 49 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 50 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 51 H 0.38 10.26 7.50 -40.82 -0.31 9.95 16 52 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 402.45 15.07 6.06 6.06 Total: -1.00 -33.88 402.45 -10.17 -44.04 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -9.02 Total: 7.61 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.29 Total: -2.57 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 0.01 Total: -62.50 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.88 -10.17 -44.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036200892.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.322 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds