Wall clock time and date at job start Wed Apr 1 2020 04:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.49636 * 2 1 4 4 C 1.52761 * 109.58971 * 240.04306 * 2 1 3 5 5 N 1.46930 * 109.00770 * 185.53731 * 4 2 1 6 6 C 1.34773 * 120.63215 * 233.58803 * 5 4 2 7 7 O 1.21572 * 119.99758 * 184.49672 * 6 5 4 8 8 C 1.47713 * 119.99963 * 4.22163 * 6 5 4 9 9 N 1.32204 * 126.67693 * 354.74112 * 8 6 5 10 10 N 1.28844 * 110.14965 * 179.97438 * 9 8 6 11 11 C 1.46499 * 124.97531 * 179.97438 * 10 9 8 12 12 C 1.34311 * 110.04337 * 359.94577 * 10 9 8 13 13 C 1.35584 * 107.21271 * 359.84049 * 12 10 9 14 14 C 1.50383 * 124.61469 * 179.39086 * 13 12 10 15 15 C 1.53481 * 108.34887 * 344.34055 * 14 13 12 16 16 C 1.53106 * 109.50658 * 49.25029 * 15 14 13 17 17 C 1.50711 * 128.90573 * 180.20491 * 12 10 9 18 18 C 1.46932 * 118.73658 * 53.31093 * 5 4 2 19 19 C 1.53196 * 108.77554 * 306.64613 * 18 5 4 20 20 C 1.53035 * 109.31435 * 54.63442 * 19 18 5 21 21 H 1.08997 * 109.45998 * 58.65303 * 20 19 18 22 22 N 1.46495 * 109.45962 * 178.61430 * 20 19 18 23 23 C 1.36934 * 120.00223 * 274.99953 * 22 20 19 24 24 H 1.08001 * 119.99845 * 0.02562 * 23 22 20 25 25 C 1.38813 * 120.00054 * 180.02562 * 23 22 20 26 26 N 1.31620 * 120.00174 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99860 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47342 * 0.02562 * 27 25 23 29 29 H 1.48506 * 109.46960 * 120.00142 * 27 25 23 30 30 H 1.48493 * 109.47442 * 239.99831 * 27 25 23 31 31 H 1.08995 * 109.47138 * 299.93427 * 1 2 3 32 32 H 1.08999 * 109.46898 * 59.93699 * 1 2 3 33 33 H 1.09007 * 109.46986 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.51184 * 65.65911 * 4 2 1 35 35 H 1.09003 * 109.43756 * 305.36979 * 4 2 1 36 36 H 1.09000 * 109.47042 * 90.02879 * 11 10 9 37 37 H 1.09002 * 109.46689 * 210.02198 * 11 10 9 38 38 H 1.08994 * 109.47883 * 330.02481 * 11 10 9 39 39 H 1.09003 * 109.86302 * 224.50812 * 14 13 12 40 40 H 1.09000 * 109.47517 * 103.94658 * 14 13 12 41 41 H 1.08995 * 109.46721 * 289.23736 * 15 14 13 42 42 H 1.09003 * 109.46509 * 169.25957 * 15 14 13 43 43 H 1.08998 * 109.44326 * 169.88799 * 16 15 14 44 44 H 1.08999 * 109.41226 * 49.96847 * 16 15 14 45 45 H 1.09002 * 109.69092 * 283.01025 * 17 12 10 46 46 H 1.09000 * 109.68878 * 43.55474 * 17 12 10 47 47 H 1.09001 * 109.58802 * 66.43270 * 18 5 4 48 48 H 1.09002 * 109.58401 * 186.85898 * 18 5 4 49 49 H 1.08997 * 109.49912 * 174.58903 * 19 18 5 50 50 H 1.08999 * 109.49549 * 294.68318 * 19 18 5 51 51 H 0.97002 * 120.00120 * 95.00504 * 22 20 19 52 52 H 0.97002 * 120.00004 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0423 -0.7187 -1.2469 5 7 3.5054 -0.8284 -1.1689 6 6 4.2820 -0.3846 -2.1770 7 8 5.4851 -0.5547 -2.1376 8 6 3.6707 0.3029 -3.3327 9 7 2.3789 0.4675 -3.5608 10 7 2.2013 1.1131 -4.6616 11 6 0.8969 1.4719 -5.2236 12 6 3.3874 1.4095 -5.2179 13 6 4.3490 0.9146 -4.4001 14 6 5.8267 1.0173 -4.6593 15 6 6.0337 1.3969 -6.1320 16 6 5.1431 2.5922 -6.4819 17 6 3.6734 2.1532 -6.4971 18 6 4.1060 -1.4256 0.0317 19 6 3.5708 -0.6940 1.2667 20 6 2.0408 -0.7228 1.2486 21 1 1.6972 -1.7571 1.2355 22 7 1.5259 -0.0528 2.4453 23 6 1.3944 -0.7493 3.6169 24 1 1.6708 -1.7925 3.6589 25 6 0.9060 -0.1145 4.7507 26 7 0.5688 1.1567 4.6995 27 14 0.7260 -1.0649 6.3487 28 1 1.1698 -2.4671 6.1435 29 1 1.5624 -0.4302 7.3990 30 1 -0.6965 -1.0528 6.7744 31 1 -0.3633 0.5128 0.8905 32 1 -0.3633 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7654 -0.1498 -2.1345 35 1 1.6033 -1.7151 -1.2973 36 1 0.5949 2.4488 -4.8462 37 1 0.9674 1.5084 -6.3107 38 1 0.1579 0.7256 -4.9323 39 1 6.3058 0.0596 -4.4559 40 1 6.2556 1.7870 -4.0177 41 1 5.7707 0.5501 -6.7658 42 1 7.0783 1.6621 -6.2954 43 1 5.4179 2.9738 -7.4652 44 1 5.2799 3.3761 -5.7371 45 1 3.4944 1.4987 -7.3503 46 1 3.0285 3.0293 -6.5646 47 1 3.8387 -2.4809 0.0877 48 1 5.1903 -1.3230 -0.0125 49 1 3.9333 -1.1884 2.1680 50 1 3.9154 0.3400 1.2548 51 1 1.2780 0.8843 2.4078 52 1 0.2272 1.6001 5.4917 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036200892.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:15 Heat of formation + Delta-G solvation = 32.860507 kcal Electronic energy + Delta-G solvation = -31716.916297 eV Core-core repulsion = 27717.213118 eV Total energy + Delta-G solvation = -3999.703179 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.89275 -41.07787 -39.02787 -37.84842 -36.17919 -34.83300 -34.23048 -33.18613 -31.36985 -31.22912 -30.71312 -28.36008 -27.54375 -26.65500 -25.06903 -24.45427 -23.54513 -22.76967 -22.53012 -21.22370 -20.27618 -19.93616 -19.07764 -17.95215 -17.66199 -17.41142 -16.85780 -16.73491 -16.11939 -15.75978 -15.64595 -15.49487 -15.20833 -14.77529 -14.70516 -14.64491 -14.35491 -14.31082 -14.00785 -13.94278 -13.68635 -13.58745 -13.30729 -13.17892 -12.98600 -12.89354 -12.87126 -12.77622 -12.56027 -12.11381 -12.05536 -11.84747 -11.74823 -11.71989 -11.67996 -11.59334 -11.54009 -11.15010 -10.92264 -10.64336 -10.12225 -9.69950 -9.52801 -8.98439 -7.92758 -5.20481 0.46681 1.09997 1.46581 1.47241 1.50383 1.57013 2.00961 2.30838 2.56509 3.22284 3.40138 3.56364 3.67443 3.80439 3.84524 4.00773 4.06399 4.08517 4.17235 4.22999 4.30824 4.33991 4.37102 4.39940 4.46576 4.50994 4.61043 4.67186 4.68079 4.70167 4.75769 4.76545 4.82719 4.90891 4.95472 5.02526 5.03833 5.07321 5.13989 5.19371 5.25543 5.28476 5.34185 5.43092 5.45754 5.49594 5.52802 5.57532 5.66822 6.00795 6.28680 6.33439 6.85008 7.12455 7.35160 8.10275 8.34974 9.30996 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.002565 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.697093 B =10915.498575 C =11694.329907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.096 4.096 3 H 0.047 0.953 4 C 0.090 3.910 5 N -0.596 5.596 6 C 0.594 3.406 7 O -0.569 6.569 8 C -0.034 4.034 9 N -0.277 5.277 10 N -0.270 5.270 11 C 0.070 3.930 12 C 0.023 3.977 13 C -0.173 4.173 14 C -0.043 4.043 15 C -0.114 4.114 16 C -0.113 4.113 17 C -0.043 4.043 18 C 0.121 3.879 19 C -0.138 4.138 20 C 0.180 3.820 21 H 0.048 0.952 22 N -0.730 5.730 23 C -0.231 4.231 24 H 0.075 0.925 25 C -0.077 4.077 26 N -0.970 5.970 27 Si 0.969 3.031 28 H -0.266 1.266 29 H -0.297 1.297 30 H -0.294 1.294 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.149 0.851 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.058 0.942 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.064 0.936 50 H 0.038 0.962 51 H 0.371 0.629 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.048 2.027 -31.417 31.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.116 4.116 3 H 0.065 0.935 4 C -0.033 4.033 5 N -0.326 5.326 6 C 0.382 3.618 7 O -0.448 6.448 8 C -0.190 4.190 9 N -0.114 5.114 10 N -0.056 5.056 11 C -0.068 4.068 12 C -0.104 4.104 13 C -0.183 4.183 14 C -0.081 4.081 15 C -0.152 4.152 16 C -0.151 4.151 17 C -0.081 4.081 18 C -0.002 4.002 19 C -0.179 4.179 20 C 0.071 3.929 21 H 0.066 0.934 22 N -0.369 5.369 23 C -0.362 4.362 24 H 0.093 0.907 25 C -0.269 4.269 26 N -0.622 5.622 27 Si 0.799 3.201 28 H -0.191 1.191 29 H -0.225 1.225 30 H -0.221 1.221 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.165 0.835 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.147 0.853 38 H 0.123 0.877 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.119 0.881 44 H 0.077 0.923 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.101 0.899 48 H 0.099 0.901 49 H 0.083 0.917 50 H 0.057 0.943 51 H 0.203 0.797 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.471 1.555 -30.879 31.017 hybrid contribution 0.520 0.092 1.811 1.886 sum 2.990 1.647 -29.068 29.268 Atomic orbital electron populations 1.21525 0.93335 1.01982 1.01325 1.21488 0.97050 0.98687 0.94388 0.93473 1.22757 0.77397 1.02230 1.00958 1.48065 1.08140 1.59074 1.17371 1.17379 0.85473 0.77551 0.81393 1.90703 1.15009 1.59352 1.79738 1.21426 0.90607 1.07967 0.99026 1.73244 1.17898 1.16193 1.04037 1.45750 1.08666 1.37026 1.14139 1.22674 0.78803 1.03905 1.01456 1.21660 0.84222 1.04221 1.00276 1.20157 0.98015 1.04941 0.95184 1.19957 0.88886 1.01241 0.98008 1.21642 1.00969 0.98927 0.93651 1.21588 0.92751 0.97394 1.03350 1.20440 0.98425 0.99350 0.89902 1.21610 0.98641 0.97139 0.82801 1.22467 0.99170 0.99449 0.96863 1.20425 0.90884 0.95487 0.86068 0.93447 1.42579 1.76694 1.10866 1.06732 1.19628 1.33644 0.94364 0.88607 0.90688 1.25500 1.03151 0.96983 1.01267 1.69828 1.52015 1.11087 1.29231 0.85129 0.76730 0.78248 0.80024 1.19059 1.22479 1.22098 0.94211 0.91096 0.92415 0.83507 0.90834 0.88214 0.85317 0.87747 0.92184 0.92252 0.91276 0.90140 0.88061 0.92301 0.87698 0.87838 0.89945 0.90051 0.91727 0.94344 0.79732 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.05 9.03 71.98 0.65 -3.40 16 2 C -0.10 -3.37 2.44 -10.85 -0.03 -3.39 16 3 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 4 C 0.09 2.73 5.58 86.22 0.48 3.21 16 5 N -0.60 -20.08 2.98 -823.26 -2.45 -22.54 16 6 C 0.59 21.13 7.70 86.75 0.67 21.80 16 7 O -0.57 -22.72 15.19 -3.94 -0.06 -22.78 16 8 C -0.03 -1.05 6.89 42.14 0.29 -0.76 16 9 N -0.28 -7.15 8.35 -48.62 -0.41 -7.56 16 10 N -0.27 -4.88 3.69 -356.29 -1.31 -6.20 16 11 C 0.07 0.49 11.17 127.77 1.43 1.91 16 12 C 0.02 0.42 6.71 41.57 0.28 0.70 16 13 C -0.17 -4.40 5.99 -20.03 -0.12 -4.52 16 14 C -0.04 -0.98 5.59 29.91 0.17 -0.81 16 15 C -0.11 -1.56 5.91 30.79 0.18 -1.37 16 16 C -0.11 -1.03 5.89 30.76 0.18 -0.85 16 17 C -0.04 -0.35 5.81 29.99 0.17 -0.17 16 18 C 0.12 4.10 6.42 86.36 0.55 4.66 16 19 C -0.14 -5.44 5.66 30.67 0.17 -5.27 16 20 C 0.18 7.39 2.20 45.02 0.10 7.49 16 21 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 22 N -0.73 -37.37 4.41 -322.82 -1.42 -38.79 16 23 C -0.23 -12.88 9.93 84.03 0.83 -12.05 16 24 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 25 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 26 N -0.97 -60.24 13.06 21.65 0.28 -59.96 16 27 Si 0.97 46.95 29.55 68.60 2.03 48.98 16 28 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 29 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 30 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 31 H 0.04 1.56 7.36 -2.39 -0.02 1.54 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.15 4.22 3.70 -86.49 -0.32 3.90 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.10 0.49 8.14 -2.39 -0.02 0.48 16 37 H 0.13 0.01 7.86 -2.39 -0.02 -0.01 16 38 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.06 1.63 7.59 -2.39 -0.02 1.61 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.06 0.68 8.11 -2.39 -0.02 0.66 16 45 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 48 H 0.08 2.84 7.03 -2.39 -0.02 2.83 16 49 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 50 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 51 H 0.37 20.66 7.50 -92.71 -0.70 19.96 16 52 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -77.06 402.45 3.05 -74.01 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.09 Total: 31.67 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 6.48 Total: 3.17 kcal Atomic # 7 Polarization: -129.73 SS G_CDS: -5.31 Total: -135.04 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.06 Total: -22.78 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -77.06 3.05 -74.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036200892.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.871 kcal (2) G-P(sol) polarization free energy of solvation -77.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds