Wall clock time and date at job start Wed Apr 1 2020 04:41:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.08997 * 109.49636 * 2 1
4 4 C 1.52761 * 109.58971 * 240.04306 * 2 1 3
5 5 N 1.46930 * 109.00770 * 185.53731 * 4 2 1
6 6 C 1.34773 * 120.63215 * 233.58803 * 5 4 2
7 7 O 1.21572 * 119.99758 * 184.49672 * 6 5 4
8 8 C 1.47713 * 119.99963 * 4.22163 * 6 5 4
9 9 N 1.32204 * 126.67693 * 354.74112 * 8 6 5
10 10 N 1.28844 * 110.14965 * 179.97438 * 9 8 6
11 11 C 1.46499 * 124.97531 * 179.97438 * 10 9 8
12 12 C 1.34311 * 110.04337 * 359.94577 * 10 9 8
13 13 C 1.35584 * 107.21271 * 359.84049 * 12 10 9
14 14 C 1.50383 * 124.61469 * 179.39086 * 13 12 10
15 15 C 1.53481 * 108.34887 * 344.34055 * 14 13 12
16 16 C 1.53106 * 109.50658 * 49.25029 * 15 14 13
17 17 C 1.50711 * 128.90573 * 180.20491 * 12 10 9
18 18 C 1.46932 * 118.73658 * 53.31093 * 5 4 2
19 19 C 1.53196 * 108.77554 * 306.64613 * 18 5 4
20 20 C 1.53035 * 109.31435 * 54.63442 * 19 18 5
21 21 H 1.08997 * 109.45998 * 58.65303 * 20 19 18
22 22 N 1.46495 * 109.45962 * 178.61430 * 20 19 18
23 23 C 1.36934 * 120.00223 * 274.99953 * 22 20 19
24 24 H 1.08001 * 119.99845 * 0.02562 * 23 22 20
25 25 C 1.38813 * 120.00054 * 180.02562 * 23 22 20
26 26 N 1.31620 * 120.00174 * 0.02562 * 25 23 22
27 27 Si 1.86800 * 119.99860 * 179.97438 * 25 23 22
28 28 H 1.48499 * 109.47342 * 0.02562 * 27 25 23
29 29 H 1.48506 * 109.46960 * 120.00142 * 27 25 23
30 30 H 1.48493 * 109.47442 * 239.99831 * 27 25 23
31 31 H 1.08995 * 109.47138 * 299.93427 * 1 2 3
32 32 H 1.08999 * 109.46898 * 59.93699 * 1 2 3
33 33 H 1.09007 * 109.46986 * 179.97438 * 1 2 3
34 34 H 1.08996 * 109.51184 * 65.65911 * 4 2 1
35 35 H 1.09003 * 109.43756 * 305.36979 * 4 2 1
36 36 H 1.09000 * 109.47042 * 90.02879 * 11 10 9
37 37 H 1.09002 * 109.46689 * 210.02198 * 11 10 9
38 38 H 1.08994 * 109.47883 * 330.02481 * 11 10 9
39 39 H 1.09003 * 109.86302 * 224.50812 * 14 13 12
40 40 H 1.09000 * 109.47517 * 103.94658 * 14 13 12
41 41 H 1.08995 * 109.46721 * 289.23736 * 15 14 13
42 42 H 1.09003 * 109.46509 * 169.25957 * 15 14 13
43 43 H 1.08998 * 109.44326 * 169.88799 * 16 15 14
44 44 H 1.08999 * 109.41226 * 49.96847 * 16 15 14
45 45 H 1.09002 * 109.69092 * 283.01025 * 17 12 10
46 46 H 1.09000 * 109.68878 * 43.55474 * 17 12 10
47 47 H 1.09001 * 109.58802 * 66.43270 * 18 5 4
48 48 H 1.09002 * 109.58401 * 186.85898 * 18 5 4
49 49 H 1.08997 * 109.49912 * 174.58903 * 19 18 5
50 50 H 1.08999 * 109.49549 * 294.68318 * 19 18 5
51 51 H 0.97002 * 120.00120 * 95.00504 * 22 20 19
52 52 H 0.97002 * 120.00004 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8938 1.0275 0.0000
4 6 2.0423 -0.7187 -1.2469
5 7 3.5054 -0.8284 -1.1689
6 6 4.2820 -0.3846 -2.1770
7 8 5.4851 -0.5547 -2.1376
8 6 3.6707 0.3029 -3.3327
9 7 2.3789 0.4675 -3.5608
10 7 2.2013 1.1131 -4.6616
11 6 0.8969 1.4719 -5.2236
12 6 3.3874 1.4095 -5.2179
13 6 4.3490 0.9146 -4.4001
14 6 5.8267 1.0173 -4.6593
15 6 6.0337 1.3969 -6.1320
16 6 5.1431 2.5922 -6.4819
17 6 3.6734 2.1532 -6.4971
18 6 4.1060 -1.4256 0.0317
19 6 3.5708 -0.6940 1.2667
20 6 2.0408 -0.7228 1.2486
21 1 1.6972 -1.7571 1.2355
22 7 1.5259 -0.0528 2.4453
23 6 1.3944 -0.7493 3.6169
24 1 1.6708 -1.7925 3.6589
25 6 0.9060 -0.1145 4.7507
26 7 0.5688 1.1567 4.6995
27 14 0.7260 -1.0649 6.3487
28 1 1.1698 -2.4671 6.1435
29 1 1.5624 -0.4302 7.3990
30 1 -0.6965 -1.0528 6.7744
31 1 -0.3633 0.5128 0.8905
32 1 -0.3633 0.5148 -0.8894
33 1 -0.3633 -1.0277 -0.0005
34 1 1.7654 -0.1498 -2.1345
35 1 1.6033 -1.7151 -1.2973
36 1 0.5949 2.4488 -4.8462
37 1 0.9674 1.5084 -6.3107
38 1 0.1579 0.7256 -4.9323
39 1 6.3058 0.0596 -4.4559
40 1 6.2556 1.7870 -4.0177
41 1 5.7707 0.5501 -6.7658
42 1 7.0783 1.6621 -6.2954
43 1 5.4179 2.9738 -7.4652
44 1 5.2799 3.3761 -5.7371
45 1 3.4944 1.4987 -7.3503
46 1 3.0285 3.0293 -6.5646
47 1 3.8387 -2.4809 0.0877
48 1 5.1903 -1.3230 -0.0125
49 1 3.9333 -1.1884 2.1680
50 1 3.9154 0.3400 1.2548
51 1 1.2780 0.8843 2.4078
52 1 0.2272 1.6001 5.4917
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001036200892.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:41:15
Heat of formation + Delta-G solvation = 32.860507 kcal
Electronic energy + Delta-G solvation = -31716.916297 eV
Core-core repulsion = 27717.213118 eV
Total energy + Delta-G solvation = -3999.703179 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.26 seconds
Orbital eigenvalues (eV)
-43.89275 -41.07787 -39.02787 -37.84842 -36.17919 -34.83300 -34.23048 -33.18613
-31.36985 -31.22912 -30.71312 -28.36008 -27.54375 -26.65500 -25.06903 -24.45427
-23.54513 -22.76967 -22.53012 -21.22370 -20.27618 -19.93616 -19.07764 -17.95215
-17.66199 -17.41142 -16.85780 -16.73491 -16.11939 -15.75978 -15.64595 -15.49487
-15.20833 -14.77529 -14.70516 -14.64491 -14.35491 -14.31082 -14.00785 -13.94278
-13.68635 -13.58745 -13.30729 -13.17892 -12.98600 -12.89354 -12.87126 -12.77622
-12.56027 -12.11381 -12.05536 -11.84747 -11.74823 -11.71989 -11.67996 -11.59334
-11.54009 -11.15010 -10.92264 -10.64336 -10.12225 -9.69950 -9.52801 -8.98439
-7.92758 -5.20481 0.46681 1.09997 1.46581 1.47241 1.50383 1.57013
2.00961 2.30838 2.56509 3.22284 3.40138 3.56364 3.67443 3.80439
3.84524 4.00773 4.06399 4.08517 4.17235 4.22999 4.30824 4.33991
4.37102 4.39940 4.46576 4.50994 4.61043 4.67186 4.68079 4.70167
4.75769 4.76545 4.82719 4.90891 4.95472 5.02526 5.03833 5.07321
5.13989 5.19371 5.25543 5.28476 5.34185 5.43092 5.45754 5.49594
5.52802 5.57532 5.66822 6.00795 6.28680 6.33439 6.85008 7.12455
7.35160 8.10275 8.34974 9.30996
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.019900 B = 0.002565 C = 0.002394
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1406.697093 B =10915.498575 C =11694.329907
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.096 4.096
3 H 0.047 0.953
4 C 0.090 3.910
5 N -0.596 5.596
6 C 0.594 3.406
7 O -0.569 6.569
8 C -0.034 4.034
9 N -0.277 5.277
10 N -0.270 5.270
11 C 0.070 3.930
12 C 0.023 3.977
13 C -0.173 4.173
14 C -0.043 4.043
15 C -0.114 4.114
16 C -0.113 4.113
17 C -0.043 4.043
18 C 0.121 3.879
19 C -0.138 4.138
20 C 0.180 3.820
21 H 0.048 0.952
22 N -0.730 5.730
23 C -0.231 4.231
24 H 0.075 0.925
25 C -0.077 4.077
26 N -0.970 5.970
27 Si 0.969 3.031
28 H -0.266 1.266
29 H -0.297 1.297
30 H -0.294 1.294
31 H 0.039 0.961
32 H 0.070 0.930
33 H 0.057 0.943
34 H 0.149 0.851
35 H 0.073 0.927
36 H 0.099 0.901
37 H 0.129 0.871
38 H 0.104 0.896
39 H 0.060 0.940
40 H 0.059 0.941
41 H 0.069 0.931
42 H 0.080 0.920
43 H 0.101 0.899
44 H 0.058 0.942
45 H 0.105 0.895
46 H 0.103 0.897
47 H 0.082 0.918
48 H 0.081 0.919
49 H 0.064 0.936
50 H 0.038 0.962
51 H 0.371 0.629
52 H 0.249 0.751
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.048 2.027 -31.417 31.630
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.116 4.116
3 H 0.065 0.935
4 C -0.033 4.033
5 N -0.326 5.326
6 C 0.382 3.618
7 O -0.448 6.448
8 C -0.190 4.190
9 N -0.114 5.114
10 N -0.056 5.056
11 C -0.068 4.068
12 C -0.104 4.104
13 C -0.183 4.183
14 C -0.081 4.081
15 C -0.152 4.152
16 C -0.151 4.151
17 C -0.081 4.081
18 C -0.002 4.002
19 C -0.179 4.179
20 C 0.071 3.929
21 H 0.066 0.934
22 N -0.369 5.369
23 C -0.362 4.362
24 H 0.093 0.907
25 C -0.269 4.269
26 N -0.622 5.622
27 Si 0.799 3.201
28 H -0.191 1.191
29 H -0.225 1.225
30 H -0.221 1.221
31 H 0.058 0.942
32 H 0.089 0.911
33 H 0.076 0.924
34 H 0.165 0.835
35 H 0.092 0.908
36 H 0.118 0.882
37 H 0.147 0.853
38 H 0.123 0.877
39 H 0.078 0.922
40 H 0.077 0.923
41 H 0.087 0.913
42 H 0.099 0.901
43 H 0.119 0.881
44 H 0.077 0.923
45 H 0.123 0.877
46 H 0.122 0.878
47 H 0.101 0.899
48 H 0.099 0.901
49 H 0.083 0.917
50 H 0.057 0.943
51 H 0.203 0.797
52 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges 2.471 1.555 -30.879 31.017
hybrid contribution 0.520 0.092 1.811 1.886
sum 2.990 1.647 -29.068 29.268
Atomic orbital electron populations
1.21525 0.93335 1.01982 1.01325 1.21488 0.97050 0.98687 0.94388
0.93473 1.22757 0.77397 1.02230 1.00958 1.48065 1.08140 1.59074
1.17371 1.17379 0.85473 0.77551 0.81393 1.90703 1.15009 1.59352
1.79738 1.21426 0.90607 1.07967 0.99026 1.73244 1.17898 1.16193
1.04037 1.45750 1.08666 1.37026 1.14139 1.22674 0.78803 1.03905
1.01456 1.21660 0.84222 1.04221 1.00276 1.20157 0.98015 1.04941
0.95184 1.19957 0.88886 1.01241 0.98008 1.21642 1.00969 0.98927
0.93651 1.21588 0.92751 0.97394 1.03350 1.20440 0.98425 0.99350
0.89902 1.21610 0.98641 0.97139 0.82801 1.22467 0.99170 0.99449
0.96863 1.20425 0.90884 0.95487 0.86068 0.93447 1.42579 1.76694
1.10866 1.06732 1.19628 1.33644 0.94364 0.88607 0.90688 1.25500
1.03151 0.96983 1.01267 1.69828 1.52015 1.11087 1.29231 0.85129
0.76730 0.78248 0.80024 1.19059 1.22479 1.22098 0.94211 0.91096
0.92415 0.83507 0.90834 0.88214 0.85317 0.87747 0.92184 0.92252
0.91276 0.90140 0.88061 0.92301 0.87698 0.87838 0.89945 0.90051
0.91727 0.94344 0.79732 0.94214
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.05 9.03 71.98 0.65 -3.40 16
2 C -0.10 -3.37 2.44 -10.85 -0.03 -3.39 16
3 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16
4 C 0.09 2.73 5.58 86.22 0.48 3.21 16
5 N -0.60 -20.08 2.98 -823.26 -2.45 -22.54 16
6 C 0.59 21.13 7.70 86.75 0.67 21.80 16
7 O -0.57 -22.72 15.19 -3.94 -0.06 -22.78 16
8 C -0.03 -1.05 6.89 42.14 0.29 -0.76 16
9 N -0.28 -7.15 8.35 -48.62 -0.41 -7.56 16
10 N -0.27 -4.88 3.69 -356.29 -1.31 -6.20 16
11 C 0.07 0.49 11.17 127.77 1.43 1.91 16
12 C 0.02 0.42 6.71 41.57 0.28 0.70 16
13 C -0.17 -4.40 5.99 -20.03 -0.12 -4.52 16
14 C -0.04 -0.98 5.59 29.91 0.17 -0.81 16
15 C -0.11 -1.56 5.91 30.79 0.18 -1.37 16
16 C -0.11 -1.03 5.89 30.76 0.18 -0.85 16
17 C -0.04 -0.35 5.81 29.99 0.17 -0.17 16
18 C 0.12 4.10 6.42 86.36 0.55 4.66 16
19 C -0.14 -5.44 5.66 30.67 0.17 -5.27 16
20 C 0.18 7.39 2.20 45.02 0.10 7.49 16
21 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16
22 N -0.73 -37.37 4.41 -322.82 -1.42 -38.79 16
23 C -0.23 -12.88 9.93 84.03 0.83 -12.05 16
24 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16
25 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16
26 N -0.97 -60.24 13.06 21.65 0.28 -59.96 16
27 Si 0.97 46.95 29.55 68.60 2.03 48.98 16
28 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16
29 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16
30 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16
31 H 0.04 1.56 7.36 -2.39 -0.02 1.54 16
32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16
33 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16
34 H 0.15 4.22 3.70 -86.49 -0.32 3.90 16
35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16
36 H 0.10 0.49 8.14 -2.39 -0.02 0.48 16
37 H 0.13 0.01 7.86 -2.39 -0.02 -0.01 16
38 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16
39 H 0.06 1.63 7.59 -2.39 -0.02 1.61 16
40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16
41 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16
42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16
43 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16
44 H 0.06 0.68 8.11 -2.39 -0.02 0.66 16
45 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16
46 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16
47 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16
48 H 0.08 2.84 7.03 -2.39 -0.02 2.83 16
49 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16
50 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16
51 H 0.37 20.66 7.50 -92.71 -0.70 19.96 16
52 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16
Total: -1.00 -77.06 402.45 3.05 -74.01
By element:
Atomic # 1 Polarization: 31.76 SS G_CDS: -0.09 Total: 31.67 kcal
Atomic # 6 Polarization: -3.31 SS G_CDS: 6.48 Total: 3.17 kcal
Atomic # 7 Polarization: -129.73 SS G_CDS: -5.31 Total: -135.04 kcal
Atomic # 8 Polarization: -22.72 SS G_CDS: -0.06 Total: -22.78 kcal
Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal
Total: -77.06 3.05 -74.01 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036200892.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 106.871 kcal
(2) G-P(sol) polarization free energy of solvation -77.057 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.814 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.010 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.861 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.27 seconds