Wall clock time and date at job start Wed Apr 1 2020 04:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49916 * 2 1 4 4 C 1.53195 * 109.49576 * 120.06099 * 2 1 3 5 5 N 1.46929 * 108.77586 * 174.58587 * 4 2 1 6 6 C 1.34777 * 120.62747 * 126.37190 * 5 4 2 7 7 O 1.21563 * 120.00345 * 4.85685 * 6 5 4 8 8 C 1.47712 * 119.99382 * 184.85439 * 6 5 4 9 9 N 1.32051 * 126.65173 * 354.43441 * 8 6 5 10 10 N 1.28667 * 110.10833 * 180.02562 * 9 8 6 11 11 H 0.97001 * 124.94679 * 179.52307 * 10 9 8 12 12 C 1.34755 * 110.10525 * 359.25311 * 10 9 8 13 13 C 1.35200 * 107.18289 * 0.94506 * 12 10 9 14 14 C 1.50385 * 126.23477 * 179.00465 * 13 12 10 15 15 C 1.53216 * 109.07246 * 27.88497 * 14 13 12 16 16 C 1.52657 * 109.62008 * 271.31299 * 15 14 13 17 17 C 1.52611 * 110.81424 * 61.53226 * 16 15 14 18 18 C 1.50690 * 127.36910 * 181.57860 * 12 10 9 19 19 C 1.46925 * 118.73675 * 306.64039 * 5 4 2 20 20 C 1.52767 * 109.00493 * 53.31587 * 19 5 4 21 21 C 1.53035 * 109.49891 * 239.89905 * 2 1 3 22 22 H 1.09001 * 109.46197 * 298.70443 * 21 2 1 23 23 N 1.46499 * 109.45903 * 58.66556 * 21 2 1 24 24 C 1.36939 * 119.99779 * 204.99879 * 23 21 2 25 25 H 1.07998 * 120.00364 * 0.02562 * 24 23 21 26 26 C 1.38813 * 119.99816 * 180.02562 * 24 23 21 27 27 N 1.31620 * 119.99946 * 0.02562 * 26 24 23 28 28 Si 1.86797 * 119.99983 * 180.02562 * 26 24 23 29 29 H 1.48501 * 109.47172 * 359.97438 * 28 26 24 30 30 H 1.48499 * 109.47254 * 120.00256 * 28 26 24 31 31 H 1.48506 * 109.46962 * 240.00019 * 28 26 24 32 32 H 1.09005 * 109.46886 * 299.94128 * 1 2 3 33 33 H 1.08999 * 109.46599 * 59.93393 * 1 2 3 34 34 H 1.08997 * 109.47237 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.58679 * 54.80002 * 4 2 1 36 36 H 1.09000 * 109.59001 * 294.37217 * 4 2 1 37 37 H 1.08997 * 109.53420 * 268.00726 * 14 13 12 38 38 H 1.08996 * 109.60584 * 147.80238 * 14 13 12 39 39 H 1.09000 * 109.44894 * 151.26449 * 15 14 13 40 40 H 1.09003 * 109.45039 * 31.35666 * 15 14 13 41 41 H 1.08997 * 109.20180 * 301.19024 * 16 15 14 42 42 H 1.08997 * 109.21074 * 181.87796 * 16 15 14 43 43 H 1.09000 * 109.41340 * 273.52227 * 17 16 15 44 44 H 1.08996 * 109.41386 * 153.72799 * 17 16 15 45 45 H 1.08999 * 109.51926 * 346.30404 * 18 12 10 46 46 H 1.09002 * 109.52062 * 106.42167 * 18 12 10 47 47 H 1.08999 * 109.58192 * 173.14547 * 19 5 4 48 48 H 1.08998 * 109.59120 * 293.57017 * 19 5 4 49 49 H 1.08998 * 109.56326 * 185.55270 * 20 19 5 50 50 H 1.08997 * 109.36077 * 65.49691 * 20 19 5 51 51 H 0.96996 * 120.00099 * 24.99964 * 23 21 2 52 52 H 0.96996 * 119.99988 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2499 5 7 3.5046 -0.8288 1.1699 6 6 4.2810 -0.3849 2.1782 7 8 3.7713 0.0268 3.2021 8 6 5.7515 -0.3989 2.0390 9 7 6.4436 -0.9078 1.0361 10 7 7.7035 -0.7465 1.2412 11 1 8.4065 -1.0454 0.6435 12 6 7.9039 -0.0965 2.4045 13 6 6.6877 0.1331 2.9484 14 6 6.4152 0.8142 4.2612 15 6 7.5536 1.7945 4.5624 16 6 8.6634 1.0733 5.3231 17 6 9.2455 -0.0620 4.4857 18 6 9.2220 0.3220 3.0031 19 6 4.1055 -1.4217 -0.0326 20 6 3.5709 -0.6955 -1.2657 21 6 2.0408 -0.7235 -1.2480 22 1 1.6967 -1.7577 -1.2347 23 7 1.5266 -0.0537 -2.4452 24 6 1.3965 -0.7504 -3.6169 25 1 1.6726 -1.7937 -3.6584 26 6 0.9098 -0.1157 -4.7514 27 7 0.5737 1.1559 -4.7010 28 14 0.7317 -1.0662 -6.3496 29 1 1.1749 -2.4684 -6.1436 30 1 -0.6904 -1.0537 -6.7772 31 1 1.5696 -0.4318 -7.3988 32 1 -0.3633 0.5129 0.8906 33 1 -0.3632 0.5149 -0.8894 34 1 -0.3633 -1.0276 -0.0005 35 1 1.6052 -1.7212 1.2986 36 1 1.7638 -0.1572 2.1390 37 1 6.3574 0.0682 5.0538 38 1 5.4722 1.3577 4.2025 39 1 7.1736 2.6170 5.1683 40 1 7.9513 2.1875 3.6266 41 1 8.2568 0.6646 6.2481 42 1 9.4542 1.7840 5.5629 43 1 8.6523 -0.9640 4.6358 44 1 10.2736 -0.2500 4.7951 45 1 10.0353 -0.1840 2.4828 46 1 9.3413 1.4008 2.9032 47 1 5.1895 -1.3161 0.0107 48 1 3.8412 -2.4776 -0.0905 49 1 3.9334 -1.1905 -2.1665 50 1 3.9160 0.3384 -1.2541 51 1 1.2782 0.8832 -2.4079 52 1 0.2333 1.5994 -5.4936 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036295498.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:29 Heat of formation + Delta-G solvation = 45.473438 kcal Electronic energy + Delta-G solvation = -31520.545795 eV Core-core repulsion = 27521.389553 eV Total energy + Delta-G solvation = -3999.156242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.05105 -39.73892 -37.88011 -37.48354 -34.53505 -33.29661 -32.68340 -31.38947 -31.28598 -30.60193 -29.22111 -26.59841 -25.84530 -25.10395 -24.69071 -23.54312 -22.30705 -21.54041 -20.12295 -19.91523 -19.72330 -18.84228 -17.93104 -17.03959 -16.69197 -16.24509 -15.67745 -15.38097 -14.96371 -14.89325 -14.60945 -14.14160 -13.79941 -13.75598 -13.59242 -13.48811 -13.38475 -13.23737 -12.89599 -12.54815 -12.38615 -12.28985 -12.01523 -11.91399 -11.52172 -11.46752 -11.16884 -11.07348 -11.05824 -10.91117 -10.80271 -10.70973 -10.61683 -10.37592 -10.14588 -10.08519 -9.77135 -9.59829 -9.52433 -9.44635 -8.83287 -8.80477 -8.31594 -6.90617 -5.74089 -3.01948 1.49816 1.94709 2.60565 3.21802 3.43722 3.48808 3.49974 3.51633 4.20317 4.31045 4.47677 4.50323 4.60829 4.76126 4.83403 4.93319 4.97597 5.12700 5.17611 5.31132 5.35413 5.45424 5.48421 5.54812 5.56928 5.61727 5.66608 5.71426 5.77244 5.79298 5.86710 5.89145 5.92858 5.94103 6.09053 6.11440 6.15309 6.17239 6.27697 6.39451 6.47187 6.51640 6.55003 6.63360 6.73878 6.89506 6.92879 7.04440 7.16758 7.58542 7.72770 7.81683 8.34352 8.44520 9.55737 10.14485 10.49577 11.48693 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018589 B = 0.002491 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.920024 B =11237.841529 C =12108.354853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.121 3.879 5 N -0.591 5.591 6 C 0.599 3.401 7 O -0.541 6.541 8 C 0.003 3.997 9 N -0.255 5.255 10 N -0.382 5.382 11 H 0.443 0.557 12 C 0.015 3.985 13 C -0.139 4.139 14 C -0.044 4.044 15 C -0.124 4.124 16 C -0.120 4.120 17 C -0.114 4.114 18 C -0.050 4.050 19 C 0.074 3.926 20 C -0.146 4.146 21 C 0.183 3.817 22 H 0.047 0.953 23 N -0.721 5.721 24 C -0.233 4.233 25 H 0.070 0.930 26 C -0.015 4.015 27 N -0.933 5.933 28 Si 0.904 3.096 29 H -0.281 1.281 30 H -0.292 1.292 31 H -0.293 1.293 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.132 0.868 48 H 0.059 0.941 49 H 0.073 0.927 50 H 0.055 0.945 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.000 -2.436 19.750 27.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.087 0.913 4 C -0.002 4.002 5 N -0.322 5.322 6 C 0.385 3.615 7 O -0.417 6.417 8 C -0.157 4.157 9 N -0.090 5.090 10 N -0.094 5.094 11 H 0.287 0.713 12 C -0.112 4.112 13 C -0.149 4.149 14 C -0.082 4.082 15 C -0.162 4.162 16 C -0.158 4.158 17 C -0.152 4.152 18 C -0.088 4.088 19 C -0.050 4.050 20 C -0.188 4.188 21 C 0.072 3.928 22 H 0.065 0.935 23 N -0.362 5.362 24 C -0.364 4.364 25 H 0.088 0.912 26 C -0.211 4.211 27 N -0.582 5.582 28 Si 0.736 3.264 29 H -0.206 1.206 30 H -0.220 1.220 31 H -0.220 1.220 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.109 0.891 47 H 0.148 0.852 48 H 0.078 0.922 49 H 0.091 0.909 50 H 0.074 0.926 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 18.533 -2.902 19.146 26.804 hybrid contribution 0.294 -0.048 -0.979 1.024 sum 18.826 -2.950 18.167 26.328 Atomic orbital electron populations 1.21656 0.94131 1.01739 1.01795 1.21737 0.96504 1.00016 0.94695 0.91310 1.21747 0.78267 1.00879 0.99299 1.48000 1.06904 1.59178 1.18109 1.16977 0.83561 0.77695 0.83253 1.90733 1.73770 1.48600 1.28626 1.21786 0.94650 1.05394 0.93838 1.73429 0.90048 1.22314 1.23232 1.43415 1.06198 1.42315 1.17496 0.71303 1.21124 0.97573 1.02652 0.89812 1.19843 0.90119 1.05564 0.99346 1.19967 0.99188 0.97326 0.91688 1.21718 0.95669 0.98136 1.00665 1.21521 0.98150 0.97394 0.98730 1.21514 1.01286 0.99365 0.93024 1.20253 0.90482 1.02208 0.95893 1.22719 1.02072 0.96449 0.83757 1.22528 0.99804 1.00298 0.96127 1.20231 0.90680 0.95547 0.86294 0.93528 1.42423 1.76533 1.11404 1.05790 1.19270 1.35394 0.94075 0.87703 0.91230 1.24723 1.02326 0.96034 0.98010 1.69671 1.50326 1.09471 1.28697 0.86158 0.77277 0.78864 0.84150 1.20626 1.21956 1.22023 0.93824 0.90785 0.93069 0.91521 0.89350 0.90819 0.89521 0.91517 0.91386 0.91683 0.92073 0.91377 0.91271 0.90919 0.89054 0.85193 0.92233 0.90888 0.92603 0.78284 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.02 37.16 0.34 -1.96 16 2 C -0.11 -1.92 2.46 -90.50 -0.22 -2.14 16 3 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 4 C 0.12 1.91 5.71 -3.71 -0.02 1.88 16 5 N -0.59 -9.52 2.98 -174.19 -0.52 -10.04 16 6 C 0.60 9.92 7.70 -12.39 -0.10 9.82 16 7 O -0.54 -9.82 14.75 5.31 0.08 -9.74 16 8 C 0.00 0.05 6.90 -82.88 -0.57 -0.53 16 9 N -0.26 -3.28 8.59 33.35 0.29 -2.99 16 10 N -0.38 -3.54 6.83 33.42 0.23 -3.31 16 11 H 0.44 2.47 8.96 -190.32 -1.71 0.76 16 12 C 0.01 0.14 6.38 -82.40 -0.53 -0.39 16 13 C -0.14 -1.66 5.68 -104.83 -0.60 -2.26 16 14 C -0.04 -0.47 5.25 -27.92 -0.15 -0.61 16 15 C -0.12 -0.97 5.54 -26.80 -0.15 -1.11 16 16 C -0.12 -0.71 5.64 -27.11 -0.15 -0.87 16 17 C -0.11 -0.64 5.64 -26.84 -0.15 -0.79 16 18 C -0.05 -0.29 5.54 -27.80 -0.15 -0.44 16 19 C 0.07 1.15 6.30 -3.93 -0.02 1.13 16 20 C -0.15 -2.69 5.64 -26.83 -0.15 -2.84 16 21 C 0.18 3.65 2.19 -67.89 -0.15 3.50 16 22 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 23 N -0.72 -17.86 4.41 -53.39 -0.24 -18.09 16 24 C -0.23 -6.39 9.93 -15.06 -0.15 -6.54 16 25 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 26 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 27 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 28 Si 0.90 22.40 29.55 -169.99 -5.02 17.38 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 30 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 31 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.46 7.36 -51.93 -0.38 1.08 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.40 7.03 -51.93 -0.37 1.04 16 37 H 0.07 0.77 7.83 -51.93 -0.41 0.36 16 38 H 0.09 1.11 7.01 -51.93 -0.36 0.75 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.54 5.66 -51.93 -0.29 0.24 16 41 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.47 7.79 -51.93 -0.40 0.07 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.09 0.49 6.35 -51.93 -0.33 0.16 16 47 H 0.13 1.94 3.70 -117.10 -0.43 1.50 16 48 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 49 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.38 10.22 7.50 -40.82 -0.31 9.91 16 52 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 393.59 15.07 5.93 5.93 Total: -1.00 -32.80 393.59 -11.58 -44.38 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -10.03 Total: 8.59 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -3.02 Total: -4.67 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: 0.49 Total: -61.86 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.80 -11.58 -44.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036295498.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.853 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds