Wall clock time and date at job start Wed Apr 1 2020 04:40:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09002 * 109.49916 * 2 1
4 4 C 1.53195 * 109.49576 * 120.06099 * 2 1 3
5 5 N 1.46929 * 108.77586 * 174.58587 * 4 2 1
6 6 C 1.34777 * 120.62747 * 126.37190 * 5 4 2
7 7 O 1.21563 * 120.00345 * 4.85685 * 6 5 4
8 8 C 1.47712 * 119.99382 * 184.85439 * 6 5 4
9 9 N 1.32051 * 126.65173 * 354.43441 * 8 6 5
10 10 N 1.28667 * 110.10833 * 180.02562 * 9 8 6
11 11 H 0.97001 * 124.94679 * 179.52307 * 10 9 8
12 12 C 1.34755 * 110.10525 * 359.25311 * 10 9 8
13 13 C 1.35200 * 107.18289 * 0.94506 * 12 10 9
14 14 C 1.50385 * 126.23477 * 179.00465 * 13 12 10
15 15 C 1.53216 * 109.07246 * 27.88497 * 14 13 12
16 16 C 1.52657 * 109.62008 * 271.31299 * 15 14 13
17 17 C 1.52611 * 110.81424 * 61.53226 * 16 15 14
18 18 C 1.50690 * 127.36910 * 181.57860 * 12 10 9
19 19 C 1.46925 * 118.73675 * 306.64039 * 5 4 2
20 20 C 1.52767 * 109.00493 * 53.31587 * 19 5 4
21 21 C 1.53035 * 109.49891 * 239.89905 * 2 1 3
22 22 H 1.09001 * 109.46197 * 298.70443 * 21 2 1
23 23 N 1.46499 * 109.45903 * 58.66556 * 21 2 1
24 24 C 1.36939 * 119.99779 * 204.99879 * 23 21 2
25 25 H 1.07998 * 120.00364 * 0.02562 * 24 23 21
26 26 C 1.38813 * 119.99816 * 180.02562 * 24 23 21
27 27 N 1.31620 * 119.99946 * 0.02562 * 26 24 23
28 28 Si 1.86797 * 119.99983 * 180.02562 * 26 24 23
29 29 H 1.48501 * 109.47172 * 359.97438 * 28 26 24
30 30 H 1.48499 * 109.47254 * 120.00256 * 28 26 24
31 31 H 1.48506 * 109.46962 * 240.00019 * 28 26 24
32 32 H 1.09005 * 109.46886 * 299.94128 * 1 2 3
33 33 H 1.08999 * 109.46599 * 59.93393 * 1 2 3
34 34 H 1.08997 * 109.47237 * 179.97438 * 1 2 3
35 35 H 1.09003 * 109.58679 * 54.80002 * 4 2 1
36 36 H 1.09000 * 109.59001 * 294.37217 * 4 2 1
37 37 H 1.08997 * 109.53420 * 268.00726 * 14 13 12
38 38 H 1.08996 * 109.60584 * 147.80238 * 14 13 12
39 39 H 1.09000 * 109.44894 * 151.26449 * 15 14 13
40 40 H 1.09003 * 109.45039 * 31.35666 * 15 14 13
41 41 H 1.08997 * 109.20180 * 301.19024 * 16 15 14
42 42 H 1.08997 * 109.21074 * 181.87796 * 16 15 14
43 43 H 1.09000 * 109.41340 * 273.52227 * 17 16 15
44 44 H 1.08996 * 109.41386 * 153.72799 * 17 16 15
45 45 H 1.08999 * 109.51926 * 346.30404 * 18 12 10
46 46 H 1.09002 * 109.52062 * 106.42167 * 18 12 10
47 47 H 1.08999 * 109.58192 * 173.14547 * 19 5 4
48 48 H 1.08998 * 109.59120 * 293.57017 * 19 5 4
49 49 H 1.08998 * 109.56326 * 185.55270 * 20 19 5
50 50 H 1.08997 * 109.36077 * 65.49691 * 20 19 5
51 51 H 0.96996 * 120.00099 * 24.99964 * 23 21 2
52 52 H 0.96996 * 119.99988 * 180.02562 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8938 1.0275 0.0000
4 6 2.0413 -0.7234 1.2499
5 7 3.5046 -0.8288 1.1699
6 6 4.2810 -0.3849 2.1782
7 8 3.7713 0.0268 3.2021
8 6 5.7515 -0.3989 2.0390
9 7 6.4436 -0.9078 1.0361
10 7 7.7035 -0.7465 1.2412
11 1 8.4065 -1.0454 0.6435
12 6 7.9039 -0.0965 2.4045
13 6 6.6877 0.1331 2.9484
14 6 6.4152 0.8142 4.2612
15 6 7.5536 1.7945 4.5624
16 6 8.6634 1.0733 5.3231
17 6 9.2455 -0.0620 4.4857
18 6 9.2220 0.3220 3.0031
19 6 4.1055 -1.4217 -0.0326
20 6 3.5709 -0.6955 -1.2657
21 6 2.0408 -0.7235 -1.2480
22 1 1.6967 -1.7577 -1.2347
23 7 1.5266 -0.0537 -2.4452
24 6 1.3965 -0.7504 -3.6169
25 1 1.6726 -1.7937 -3.6584
26 6 0.9098 -0.1157 -4.7514
27 7 0.5737 1.1559 -4.7010
28 14 0.7317 -1.0662 -6.3496
29 1 1.1749 -2.4684 -6.1436
30 1 -0.6904 -1.0537 -6.7772
31 1 1.5696 -0.4318 -7.3988
32 1 -0.3633 0.5129 0.8906
33 1 -0.3632 0.5149 -0.8894
34 1 -0.3633 -1.0276 -0.0005
35 1 1.6052 -1.7212 1.2986
36 1 1.7638 -0.1572 2.1390
37 1 6.3574 0.0682 5.0538
38 1 5.4722 1.3577 4.2025
39 1 7.1736 2.6170 5.1683
40 1 7.9513 2.1875 3.6266
41 1 8.2568 0.6646 6.2481
42 1 9.4542 1.7840 5.5629
43 1 8.6523 -0.9640 4.6358
44 1 10.2736 -0.2500 4.7951
45 1 10.0353 -0.1840 2.4828
46 1 9.3413 1.4008 2.9032
47 1 5.1895 -1.3161 0.0107
48 1 3.8412 -2.4776 -0.0905
49 1 3.9334 -1.1905 -2.1665
50 1 3.9160 0.3384 -1.2541
51 1 1.2782 0.8832 -2.4079
52 1 0.2333 1.5994 -5.4936
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001036295498.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:40:28
Heat of formation + Delta-G solvation = 25.523115 kcal
Electronic energy + Delta-G solvation = -31521.410906 eV
Core-core repulsion = 27521.389553 eV
Total energy + Delta-G solvation = -4000.021353 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-43.92948 -41.06796 -38.98427 -38.45633 -36.18924 -34.61441 -33.85416 -33.05162
-32.02052 -31.45145 -30.98431 -27.88368 -26.90735 -26.42214 -25.33670 -25.06808
-23.70114 -23.07801 -21.21081 -20.86104 -20.50993 -20.08725 -19.05031 -18.81748
-17.77573 -17.15730 -16.95749 -16.76649 -16.16722 -15.74801 -15.71807 -15.62440
-15.40504 -15.13508 -14.89616 -14.38628 -14.31573 -14.22435 -14.04700 -13.95731
-13.65307 -13.37470 -13.20574 -13.00830 -12.89057 -12.79775 -12.59534 -12.47301
-12.28028 -12.09336 -12.07433 -11.86092 -11.81654 -11.62594 -11.59316 -11.32106
-11.25006 -11.17038 -10.98524 -10.62673 -10.38764 -9.70653 -9.57507 -8.96254
-7.91665 -5.19359 0.45510 1.09623 1.47315 1.47628 1.57571 1.74451
2.11677 2.30714 2.57275 3.25312 3.41866 3.63478 3.72684 3.78641
3.88267 4.01801 4.03598 4.09058 4.15370 4.19409 4.25022 4.36919
4.39010 4.40950 4.50648 4.55319 4.64779 4.70853 4.77841 4.83102
4.87362 4.90678 4.96429 5.00440 5.03500 5.08901 5.13849 5.16673
5.20467 5.29867 5.31918 5.37327 5.40561 5.46307 5.49410 5.51880
5.55241 5.61232 5.68300 6.14616 6.29555 6.35247 6.84887 7.11417
7.35991 8.11528 8.35982 9.32206
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.018589 B = 0.002491 C = 0.002312
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1505.920024 B =11237.841529 C =12108.354853
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.099 4.099
3 H 0.051 0.949
4 C 0.126 3.874
5 N -0.595 5.595
6 C 0.594 3.406
7 O -0.565 6.565
8 C -0.030 4.030
9 N -0.271 5.271
10 N -0.363 5.363
11 H 0.460 0.540
12 C 0.037 3.963
13 C -0.161 4.161
14 C -0.041 4.041
15 C -0.119 4.119
16 C -0.118 4.118
17 C -0.112 4.112
18 C -0.049 4.049
19 C 0.083 3.917
20 C -0.134 4.134
21 C 0.180 3.820
22 H 0.047 0.953
23 N -0.731 5.731
24 C -0.228 4.228
25 H 0.076 0.924
26 C -0.078 4.078
27 N -0.971 5.971
28 Si 0.969 3.031
29 H -0.265 1.265
30 H -0.296 1.296
31 H -0.297 1.297
32 H 0.066 0.934
33 H 0.041 0.959
34 H 0.059 0.941
35 H 0.084 0.916
36 H 0.089 0.911
37 H 0.070 0.930
38 H 0.056 0.944
39 H 0.068 0.932
40 H 0.069 0.931
41 H 0.062 0.938
42 H 0.079 0.921
43 H 0.052 0.948
44 H 0.093 0.907
45 H 0.103 0.897
46 H 0.102 0.898
47 H 0.144 0.856
48 H 0.072 0.928
49 H 0.063 0.937
50 H 0.037 0.963
51 H 0.370 0.630
52 H 0.249 0.751
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.877 -3.773 20.673 30.335
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.119 4.119
3 H 0.069 0.931
4 C 0.004 3.996
5 N -0.326 5.326
6 C 0.382 3.618
7 O -0.443 6.443
8 C -0.188 4.188
9 N -0.107 5.107
10 N -0.078 5.078
11 H 0.309 0.691
12 C -0.091 4.091
13 C -0.171 4.171
14 C -0.079 4.079
15 C -0.157 4.157
16 C -0.155 4.155
17 C -0.150 4.150
18 C -0.087 4.087
19 C -0.040 4.040
20 C -0.175 4.175
21 C 0.071 3.929
22 H 0.065 0.935
23 N -0.370 5.370
24 C -0.360 4.360
25 H 0.094 0.906
26 C -0.270 4.270
27 N -0.623 5.623
28 Si 0.799 3.201
29 H -0.189 1.189
30 H -0.223 1.223
31 H -0.224 1.224
32 H 0.085 0.915
33 H 0.060 0.940
34 H 0.078 0.922
35 H 0.102 0.898
36 H 0.107 0.893
37 H 0.088 0.912
38 H 0.074 0.926
39 H 0.087 0.913
40 H 0.088 0.912
41 H 0.081 0.919
42 H 0.098 0.902
43 H 0.071 0.929
44 H 0.111 0.889
45 H 0.121 0.879
46 H 0.120 0.880
47 H 0.160 0.840
48 H 0.091 0.909
49 H 0.082 0.918
50 H 0.055 0.945
51 H 0.202 0.798
52 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges 21.441 -4.288 20.087 29.692
hybrid contribution -0.521 0.368 -1.182 1.343
sum 20.920 -3.920 18.906 28.468
Atomic orbital electron populations
1.21568 0.93552 1.02127 1.01358 1.21601 0.96923 0.98929 0.94476
0.93057 1.21679 0.78492 1.01475 0.97977 1.48057 1.06959 1.59317
1.18234 1.17334 0.84691 0.76957 0.82849 1.90706 1.74562 1.49542
1.29496 1.21632 0.93849 1.07693 0.95588 1.73174 0.91468 1.22921
1.23152 1.43470 1.05564 1.41066 1.17717 0.69137 1.21593 0.98235
1.00470 0.88794 1.20100 0.90813 1.06420 0.99803 1.19913 0.99092
0.97529 0.91362 1.21692 0.95270 0.97604 1.01108 1.21511 0.97827
0.97817 0.98383 1.21516 1.02351 0.98378 0.92740 1.20457 0.89101
1.03160 0.96027 1.22684 1.02817 0.96454 0.82060 1.22319 0.98346
0.99494 0.97335 1.20431 0.91585 0.95264 0.85620 0.93489 1.42589
1.76833 1.10858 1.06697 1.19627 1.33580 0.94352 0.88481 0.90582
1.25508 1.03226 0.96972 1.01318 1.69832 1.52137 1.11112 1.29189
0.85126 0.76654 0.78295 0.80037 1.18923 1.22343 1.22406 0.91458
0.93962 0.92211 0.89819 0.89303 0.91178 0.92556 0.91291 0.91236
0.91882 0.90223 0.92919 0.88870 0.87888 0.87984 0.83959 0.90929
0.91824 0.94454 0.79801 0.94260
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.36 9.02 71.98 0.65 -3.72 16
2 C -0.10 -3.52 2.46 -10.72 -0.03 -3.55 16
3 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
4 C 0.13 3.95 5.71 86.36 0.49 4.44 16
5 N -0.59 -19.12 2.98 -823.28 -2.45 -21.57 16
6 C 0.59 19.96 7.70 86.75 0.67 20.62 16
7 O -0.56 -21.11 14.75 -3.91 -0.06 -21.17 16
8 C -0.03 -0.85 6.90 42.28 0.29 -0.56 16
9 N -0.27 -6.64 8.59 -48.41 -0.42 -7.05 16
10 N -0.36 -5.89 6.83 -48.18 -0.33 -6.22 16
11 H 0.46 3.71 8.96 -219.89 -1.97 1.74 16
12 C 0.04 0.59 6.38 41.41 0.26 0.85 16
13 C -0.16 -3.77 5.68 -20.00 -0.11 -3.89 16
14 C -0.04 -0.88 5.25 29.82 0.16 -0.72 16
15 C -0.12 -1.69 5.54 30.55 0.17 -1.52 16
16 C -0.12 -1.09 5.64 30.35 0.17 -0.92 16
17 C -0.11 -0.88 5.64 30.52 0.17 -0.71 16
18 C -0.05 -0.38 5.54 29.90 0.17 -0.21 16
19 C 0.08 2.55 6.30 86.22 0.54 3.09 16
20 C -0.13 -4.96 5.64 30.53 0.17 -4.79 16
21 C 0.18 7.24 2.19 45.02 0.10 7.34 16
22 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16
23 N -0.73 -37.05 4.41 -322.82 -1.42 -38.47 16
24 C -0.23 -12.61 9.93 84.03 0.83 -11.78 16
25 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16
26 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16
27 N -0.97 -60.15 13.06 21.65 0.28 -59.86 16
28 Si 0.97 46.47 29.55 68.60 2.03 48.50 16
29 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16
30 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16
31 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16
32 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16
33 H 0.04 1.70 7.36 -2.39 -0.02 1.69 16
34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16
35 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16
36 H 0.09 2.81 7.03 -2.39 -0.02 2.79 16
37 H 0.07 1.50 7.83 -2.39 -0.02 1.48 16
38 H 0.06 1.53 7.01 -2.39 -0.02 1.52 16
39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
40 H 0.07 0.96 5.66 -2.39 -0.01 0.95 16
41 H 0.06 0.62 8.09 -2.39 -0.02 0.61 16
42 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16
43 H 0.05 0.60 7.79 -2.39 -0.02 0.58 16
44 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16
45 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16
46 H 0.10 0.69 6.35 -2.39 -0.02 0.67 16
47 H 0.14 4.12 3.70 -86.71 -0.32 3.80 16
48 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16
49 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16
50 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16
51 H 0.37 20.55 7.50 -92.71 -0.70 19.85 16
52 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16
Total: -1.00 -73.22 393.59 0.78 -72.44
By element:
Atomic # 1 Polarization: 35.51 SS G_CDS: -2.03 Total: 33.48 kcal
Atomic # 6 Polarization: -5.24 SS G_CDS: 5.18 Total: -0.07 kcal
Atomic # 7 Polarization: -128.85 SS G_CDS: -4.34 Total: -133.18 kcal
Atomic # 8 Polarization: -21.11 SS G_CDS: -0.06 Total: -21.17 kcal
Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal
Total: -73.22 0.78 -72.44 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036295498.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.965 kcal
(2) G-P(sol) polarization free energy of solvation -73.219 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.746 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.442 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.523 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds