Wall clock time and date at job start Wed Apr 1 2020 04:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49916 * 2 1 4 4 C 1.53195 * 109.49576 * 120.06099 * 2 1 3 5 5 N 1.46929 * 108.77586 * 174.58587 * 4 2 1 6 6 C 1.34777 * 120.62747 * 126.37190 * 5 4 2 7 7 O 1.21563 * 120.00345 * 4.85685 * 6 5 4 8 8 C 1.47712 * 119.99382 * 184.85439 * 6 5 4 9 9 N 1.32051 * 126.65173 * 354.43441 * 8 6 5 10 10 N 1.28667 * 110.10833 * 180.02562 * 9 8 6 11 11 H 0.97001 * 124.94679 * 179.52307 * 10 9 8 12 12 C 1.34755 * 110.10525 * 359.25311 * 10 9 8 13 13 C 1.35200 * 107.18289 * 0.94506 * 12 10 9 14 14 C 1.50385 * 126.23477 * 179.00465 * 13 12 10 15 15 C 1.53216 * 109.07246 * 27.88497 * 14 13 12 16 16 C 1.52657 * 109.62008 * 271.31299 * 15 14 13 17 17 C 1.52611 * 110.81424 * 61.53226 * 16 15 14 18 18 C 1.50690 * 127.36910 * 181.57860 * 12 10 9 19 19 C 1.46925 * 118.73675 * 306.64039 * 5 4 2 20 20 C 1.52767 * 109.00493 * 53.31587 * 19 5 4 21 21 C 1.53035 * 109.49891 * 239.89905 * 2 1 3 22 22 H 1.09001 * 109.46197 * 298.70443 * 21 2 1 23 23 N 1.46499 * 109.45903 * 58.66556 * 21 2 1 24 24 C 1.36939 * 119.99779 * 204.99879 * 23 21 2 25 25 H 1.07998 * 120.00364 * 0.02562 * 24 23 21 26 26 C 1.38813 * 119.99816 * 180.02562 * 24 23 21 27 27 N 1.31620 * 119.99946 * 0.02562 * 26 24 23 28 28 Si 1.86797 * 119.99983 * 180.02562 * 26 24 23 29 29 H 1.48501 * 109.47172 * 359.97438 * 28 26 24 30 30 H 1.48499 * 109.47254 * 120.00256 * 28 26 24 31 31 H 1.48506 * 109.46962 * 240.00019 * 28 26 24 32 32 H 1.09005 * 109.46886 * 299.94128 * 1 2 3 33 33 H 1.08999 * 109.46599 * 59.93393 * 1 2 3 34 34 H 1.08997 * 109.47237 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.58679 * 54.80002 * 4 2 1 36 36 H 1.09000 * 109.59001 * 294.37217 * 4 2 1 37 37 H 1.08997 * 109.53420 * 268.00726 * 14 13 12 38 38 H 1.08996 * 109.60584 * 147.80238 * 14 13 12 39 39 H 1.09000 * 109.44894 * 151.26449 * 15 14 13 40 40 H 1.09003 * 109.45039 * 31.35666 * 15 14 13 41 41 H 1.08997 * 109.20180 * 301.19024 * 16 15 14 42 42 H 1.08997 * 109.21074 * 181.87796 * 16 15 14 43 43 H 1.09000 * 109.41340 * 273.52227 * 17 16 15 44 44 H 1.08996 * 109.41386 * 153.72799 * 17 16 15 45 45 H 1.08999 * 109.51926 * 346.30404 * 18 12 10 46 46 H 1.09002 * 109.52062 * 106.42167 * 18 12 10 47 47 H 1.08999 * 109.58192 * 173.14547 * 19 5 4 48 48 H 1.08998 * 109.59120 * 293.57017 * 19 5 4 49 49 H 1.08998 * 109.56326 * 185.55270 * 20 19 5 50 50 H 1.08997 * 109.36077 * 65.49691 * 20 19 5 51 51 H 0.96996 * 120.00099 * 24.99964 * 23 21 2 52 52 H 0.96996 * 119.99988 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2499 5 7 3.5046 -0.8288 1.1699 6 6 4.2810 -0.3849 2.1782 7 8 3.7713 0.0268 3.2021 8 6 5.7515 -0.3989 2.0390 9 7 6.4436 -0.9078 1.0361 10 7 7.7035 -0.7465 1.2412 11 1 8.4065 -1.0454 0.6435 12 6 7.9039 -0.0965 2.4045 13 6 6.6877 0.1331 2.9484 14 6 6.4152 0.8142 4.2612 15 6 7.5536 1.7945 4.5624 16 6 8.6634 1.0733 5.3231 17 6 9.2455 -0.0620 4.4857 18 6 9.2220 0.3220 3.0031 19 6 4.1055 -1.4217 -0.0326 20 6 3.5709 -0.6955 -1.2657 21 6 2.0408 -0.7235 -1.2480 22 1 1.6967 -1.7577 -1.2347 23 7 1.5266 -0.0537 -2.4452 24 6 1.3965 -0.7504 -3.6169 25 1 1.6726 -1.7937 -3.6584 26 6 0.9098 -0.1157 -4.7514 27 7 0.5737 1.1559 -4.7010 28 14 0.7317 -1.0662 -6.3496 29 1 1.1749 -2.4684 -6.1436 30 1 -0.6904 -1.0537 -6.7772 31 1 1.5696 -0.4318 -7.3988 32 1 -0.3633 0.5129 0.8906 33 1 -0.3632 0.5149 -0.8894 34 1 -0.3633 -1.0276 -0.0005 35 1 1.6052 -1.7212 1.2986 36 1 1.7638 -0.1572 2.1390 37 1 6.3574 0.0682 5.0538 38 1 5.4722 1.3577 4.2025 39 1 7.1736 2.6170 5.1683 40 1 7.9513 2.1875 3.6266 41 1 8.2568 0.6646 6.2481 42 1 9.4542 1.7840 5.5629 43 1 8.6523 -0.9640 4.6358 44 1 10.2736 -0.2500 4.7951 45 1 10.0353 -0.1840 2.4828 46 1 9.3413 1.4008 2.9032 47 1 5.1895 -1.3161 0.0107 48 1 3.8412 -2.4776 -0.0905 49 1 3.9334 -1.1905 -2.1665 50 1 3.9160 0.3384 -1.2541 51 1 1.2782 0.8832 -2.4079 52 1 0.2333 1.5994 -5.4936 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036295498.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:28 Heat of formation + Delta-G solvation = 25.523115 kcal Electronic energy + Delta-G solvation = -31521.410906 eV Core-core repulsion = 27521.389553 eV Total energy + Delta-G solvation = -4000.021353 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.92948 -41.06796 -38.98427 -38.45633 -36.18924 -34.61441 -33.85416 -33.05162 -32.02052 -31.45145 -30.98431 -27.88368 -26.90735 -26.42214 -25.33670 -25.06808 -23.70114 -23.07801 -21.21081 -20.86104 -20.50993 -20.08725 -19.05031 -18.81748 -17.77573 -17.15730 -16.95749 -16.76649 -16.16722 -15.74801 -15.71807 -15.62440 -15.40504 -15.13508 -14.89616 -14.38628 -14.31573 -14.22435 -14.04700 -13.95731 -13.65307 -13.37470 -13.20574 -13.00830 -12.89057 -12.79775 -12.59534 -12.47301 -12.28028 -12.09336 -12.07433 -11.86092 -11.81654 -11.62594 -11.59316 -11.32106 -11.25006 -11.17038 -10.98524 -10.62673 -10.38764 -9.70653 -9.57507 -8.96254 -7.91665 -5.19359 0.45510 1.09623 1.47315 1.47628 1.57571 1.74451 2.11677 2.30714 2.57275 3.25312 3.41866 3.63478 3.72684 3.78641 3.88267 4.01801 4.03598 4.09058 4.15370 4.19409 4.25022 4.36919 4.39010 4.40950 4.50648 4.55319 4.64779 4.70853 4.77841 4.83102 4.87362 4.90678 4.96429 5.00440 5.03500 5.08901 5.13849 5.16673 5.20467 5.29867 5.31918 5.37327 5.40561 5.46307 5.49410 5.51880 5.55241 5.61232 5.68300 6.14616 6.29555 6.35247 6.84887 7.11417 7.35991 8.11528 8.35982 9.32206 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018589 B = 0.002491 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.920024 B =11237.841529 C =12108.354853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 H 0.051 0.949 4 C 0.126 3.874 5 N -0.595 5.595 6 C 0.594 3.406 7 O -0.565 6.565 8 C -0.030 4.030 9 N -0.271 5.271 10 N -0.363 5.363 11 H 0.460 0.540 12 C 0.037 3.963 13 C -0.161 4.161 14 C -0.041 4.041 15 C -0.119 4.119 16 C -0.118 4.118 17 C -0.112 4.112 18 C -0.049 4.049 19 C 0.083 3.917 20 C -0.134 4.134 21 C 0.180 3.820 22 H 0.047 0.953 23 N -0.731 5.731 24 C -0.228 4.228 25 H 0.076 0.924 26 C -0.078 4.078 27 N -0.971 5.971 28 Si 0.969 3.031 29 H -0.265 1.265 30 H -0.296 1.296 31 H -0.297 1.297 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.144 0.856 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.037 0.963 51 H 0.370 0.630 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.877 -3.773 20.673 30.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.119 4.119 3 H 0.069 0.931 4 C 0.004 3.996 5 N -0.326 5.326 6 C 0.382 3.618 7 O -0.443 6.443 8 C -0.188 4.188 9 N -0.107 5.107 10 N -0.078 5.078 11 H 0.309 0.691 12 C -0.091 4.091 13 C -0.171 4.171 14 C -0.079 4.079 15 C -0.157 4.157 16 C -0.155 4.155 17 C -0.150 4.150 18 C -0.087 4.087 19 C -0.040 4.040 20 C -0.175 4.175 21 C 0.071 3.929 22 H 0.065 0.935 23 N -0.370 5.370 24 C -0.360 4.360 25 H 0.094 0.906 26 C -0.270 4.270 27 N -0.623 5.623 28 Si 0.799 3.201 29 H -0.189 1.189 30 H -0.223 1.223 31 H -0.224 1.224 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.111 0.889 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.160 0.840 48 H 0.091 0.909 49 H 0.082 0.918 50 H 0.055 0.945 51 H 0.202 0.798 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 21.441 -4.288 20.087 29.692 hybrid contribution -0.521 0.368 -1.182 1.343 sum 20.920 -3.920 18.906 28.468 Atomic orbital electron populations 1.21568 0.93552 1.02127 1.01358 1.21601 0.96923 0.98929 0.94476 0.93057 1.21679 0.78492 1.01475 0.97977 1.48057 1.06959 1.59317 1.18234 1.17334 0.84691 0.76957 0.82849 1.90706 1.74562 1.49542 1.29496 1.21632 0.93849 1.07693 0.95588 1.73174 0.91468 1.22921 1.23152 1.43470 1.05564 1.41066 1.17717 0.69137 1.21593 0.98235 1.00470 0.88794 1.20100 0.90813 1.06420 0.99803 1.19913 0.99092 0.97529 0.91362 1.21692 0.95270 0.97604 1.01108 1.21511 0.97827 0.97817 0.98383 1.21516 1.02351 0.98378 0.92740 1.20457 0.89101 1.03160 0.96027 1.22684 1.02817 0.96454 0.82060 1.22319 0.98346 0.99494 0.97335 1.20431 0.91585 0.95264 0.85620 0.93489 1.42589 1.76833 1.10858 1.06697 1.19627 1.33580 0.94352 0.88481 0.90582 1.25508 1.03226 0.96972 1.01318 1.69832 1.52137 1.11112 1.29189 0.85126 0.76654 0.78295 0.80037 1.18923 1.22343 1.22406 0.91458 0.93962 0.92211 0.89819 0.89303 0.91178 0.92556 0.91291 0.91236 0.91882 0.90223 0.92919 0.88870 0.87888 0.87984 0.83959 0.90929 0.91824 0.94454 0.79801 0.94260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 9.02 71.98 0.65 -3.72 16 2 C -0.10 -3.52 2.46 -10.72 -0.03 -3.55 16 3 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 4 C 0.13 3.95 5.71 86.36 0.49 4.44 16 5 N -0.59 -19.12 2.98 -823.28 -2.45 -21.57 16 6 C 0.59 19.96 7.70 86.75 0.67 20.62 16 7 O -0.56 -21.11 14.75 -3.91 -0.06 -21.17 16 8 C -0.03 -0.85 6.90 42.28 0.29 -0.56 16 9 N -0.27 -6.64 8.59 -48.41 -0.42 -7.05 16 10 N -0.36 -5.89 6.83 -48.18 -0.33 -6.22 16 11 H 0.46 3.71 8.96 -219.89 -1.97 1.74 16 12 C 0.04 0.59 6.38 41.41 0.26 0.85 16 13 C -0.16 -3.77 5.68 -20.00 -0.11 -3.89 16 14 C -0.04 -0.88 5.25 29.82 0.16 -0.72 16 15 C -0.12 -1.69 5.54 30.55 0.17 -1.52 16 16 C -0.12 -1.09 5.64 30.35 0.17 -0.92 16 17 C -0.11 -0.88 5.64 30.52 0.17 -0.71 16 18 C -0.05 -0.38 5.54 29.90 0.17 -0.21 16 19 C 0.08 2.55 6.30 86.22 0.54 3.09 16 20 C -0.13 -4.96 5.64 30.53 0.17 -4.79 16 21 C 0.18 7.24 2.19 45.02 0.10 7.34 16 22 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 23 N -0.73 -37.05 4.41 -322.82 -1.42 -38.47 16 24 C -0.23 -12.61 9.93 84.03 0.83 -11.78 16 25 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 26 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 27 N -0.97 -60.15 13.06 21.65 0.28 -59.86 16 28 Si 0.97 46.47 29.55 68.60 2.03 48.50 16 29 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 30 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 31 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 32 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.04 1.70 7.36 -2.39 -0.02 1.69 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 36 H 0.09 2.81 7.03 -2.39 -0.02 2.79 16 37 H 0.07 1.50 7.83 -2.39 -0.02 1.48 16 38 H 0.06 1.53 7.01 -2.39 -0.02 1.52 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 0.96 5.66 -2.39 -0.01 0.95 16 41 H 0.06 0.62 8.09 -2.39 -0.02 0.61 16 42 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.05 0.60 7.79 -2.39 -0.02 0.58 16 44 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.10 0.69 6.35 -2.39 -0.02 0.67 16 47 H 0.14 4.12 3.70 -86.71 -0.32 3.80 16 48 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 50 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.37 20.55 7.50 -92.71 -0.70 19.85 16 52 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -73.22 393.59 0.78 -72.44 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: -2.03 Total: 33.48 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 5.18 Total: -0.07 kcal Atomic # 7 Polarization: -128.85 SS G_CDS: -4.34 Total: -133.18 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.06 Total: -21.17 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -73.22 0.78 -72.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036295498.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.965 kcal (2) G-P(sol) polarization free energy of solvation -73.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds