Wall clock time and date at job start Wed Apr 1 2020 05:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 110.91081 * 2 1 4 4 C 1.54910 * 111.00490 * 236.09956 * 2 1 3 5 5 N 1.47419 * 104.83143 * 204.91662 * 4 2 1 6 6 C 1.34773 * 125.65182 * 204.09129 * 5 4 2 7 7 O 1.21578 * 119.99640 * 359.97438 * 6 5 4 8 8 C 1.47707 * 120.00633 * 179.97438 * 6 5 4 9 9 C 1.41501 * 126.52018 * 180.02562 * 8 6 5 10 10 C 1.35369 * 105.50256 * 179.97438 * 9 8 6 11 11 C 1.50693 * 126.38503 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47365 * 265.02327 * 11 10 9 13 13 C 1.52996 * 109.47563 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47197 * 59.99839 * 13 12 11 15 15 C 1.52998 * 109.47353 * 300.00605 * 14 13 12 16 16 C 1.52996 * 109.47463 * 59.99558 * 15 14 13 17 17 N 1.35037 * 107.22862 * 359.97438 * 10 9 8 18 18 H 0.97001 * 124.88135 * 179.97438 * 17 10 9 19 19 N 1.28472 * 110.22907 * 0.26961 * 17 10 9 20 20 C 1.47031 * 108.70310 * 24.35314 * 5 4 2 21 21 C 1.54331 * 107.26371 * 358.58504 * 20 5 4 22 22 H 1.09008 * 110.51209 * 96.45266 * 21 20 5 23 23 N 1.46501 * 111.00113 * 219.59675 * 21 20 5 24 24 C 1.36935 * 120.00479 * 268.78581 * 23 21 20 25 25 H 1.07998 * 119.99644 * 0.02562 * 24 23 21 26 26 C 1.38807 * 119.99926 * 180.02562 * 24 23 21 27 27 N 1.31621 * 120.00509 * 359.97438 * 26 24 23 28 28 Si 1.86806 * 119.99817 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47153 * 59.99674 * 28 26 24 30 30 H 1.48500 * 109.47092 * 179.97438 * 28 26 24 31 31 H 1.48496 * 109.47190 * 299.99944 * 28 26 24 32 32 H 1.09000 * 109.46801 * 182.44786 * 1 2 3 33 33 H 1.09000 * 109.47174 * 302.44701 * 1 2 3 34 34 H 1.09004 * 109.47100 * 62.44709 * 1 2 3 35 35 H 1.08998 * 110.36822 * 86.07325 * 4 2 1 36 36 H 1.09007 * 110.36132 * 323.75075 * 4 2 1 37 37 H 1.08001 * 127.25024 * 359.97438 * 9 8 6 38 38 H 1.08997 * 109.47309 * 25.02563 * 11 10 9 39 39 H 1.08997 * 109.47099 * 300.00364 * 12 11 10 40 40 H 1.08999 * 109.46903 * 60.00107 * 12 11 10 41 41 H 1.09004 * 109.46905 * 300.00068 * 13 12 11 42 42 H 1.08997 * 109.47427 * 180.02562 * 13 12 11 43 43 H 1.09004 * 109.47692 * 180.02562 * 14 13 12 44 44 H 1.09004 * 109.47006 * 60.00291 * 14 13 12 45 45 H 1.09004 * 109.46807 * 299.99807 * 15 14 13 46 46 H 1.09004 * 109.47686 * 179.97438 * 15 14 13 47 47 H 1.08999 * 109.47566 * 180.02562 * 16 15 14 48 48 H 1.08997 * 109.47209 * 60.00082 * 16 15 14 49 49 H 1.08998 * 109.87833 * 118.13385 * 20 5 4 50 50 H 1.09003 * 109.88213 * 239.29564 * 20 5 4 51 51 H 0.97007 * 119.99257 * 88.78706 * 23 21 20 52 52 H 0.96998 * 120.00076 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4272 -1.2430 -0.7733 6 6 4.4477 -1.5615 -1.5939 7 8 4.3003 -1.5005 -2.7992 8 6 5.7453 -1.9847 -1.0291 9 6 6.9026 -2.3477 -1.7578 10 6 7.8346 -2.6572 -0.8260 11 6 9.2479 -3.1082 -1.0906 12 6 9.3075 -4.6369 -1.0721 13 6 10.7425 -5.0947 -1.3401 14 6 11.6670 -4.5352 -0.2571 15 6 11.6075 -3.0065 -0.2755 16 6 10.1725 -2.5486 -0.0075 17 7 7.2616 -2.4866 0.3848 18 1 7.7043 -2.6385 1.2344 19 7 6.0439 -2.1000 0.2495 20 6 3.4658 -1.2793 0.6960 21 6 2.0862 -0.8078 1.2022 22 1 1.4468 -1.6632 1.4210 23 7 2.2247 0.0486 2.3827 24 6 2.1954 -0.5026 3.6359 25 1 2.0705 -1.5688 3.7540 26 6 2.3261 0.3091 4.7543 27 7 2.4788 1.6085 4.6104 28 14 2.2853 -0.4428 6.4639 29 1 3.3928 -1.4227 6.6002 30 1 2.4450 0.6285 7.4797 31 1 0.9864 -1.1321 6.6706 32 1 -0.3633 -1.0267 0.0439 33 1 -0.3633 0.5514 0.8672 34 1 -0.3633 0.4754 -0.9111 35 1 2.1560 -0.1720 -2.0837 36 1 1.4519 -1.6704 -1.4024 37 1 7.0182 -2.3726 -2.8313 38 1 9.5688 -2.7439 -2.0665 39 1 8.9865 -5.0012 -0.0962 40 1 8.6485 -5.0355 -1.8434 41 1 11.0638 -4.7304 -2.3159 42 1 10.7848 -6.1838 -1.3273 43 1 12.6895 -4.8610 -0.4482 44 1 11.3457 -4.8995 0.7187 45 1 11.9288 -2.6422 -1.2513 46 1 12.2659 -2.6078 0.4964 47 1 10.1300 -1.4596 -0.0211 48 1 9.8511 -2.9130 0.9682 49 1 3.6602 -2.2963 1.0366 50 1 4.2424 -0.6084 1.0631 51 1 2.3372 1.0063 2.2765 52 1 2.5705 2.1755 5.3920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054743317.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:52 Heat of formation + Delta-G solvation = 27.546225 kcal Electronic energy + Delta-G solvation = -30675.712194 eV Core-core repulsion = 26675.778570 eV Total energy + Delta-G solvation = -3999.933624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.72963 -39.53362 -38.74856 -37.35804 -34.02117 -33.03210 -32.39454 -31.70238 -31.11237 -30.63771 -28.96941 -27.43940 -26.46388 -24.15583 -23.58375 -23.13576 -22.81413 -21.20655 -21.06990 -20.21246 -19.86720 -18.56908 -17.80915 -17.10470 -16.60382 -15.98565 -15.56936 -15.40759 -15.10083 -14.63641 -14.60773 -14.42549 -14.34412 -13.93163 -13.66125 -13.48672 -13.07735 -13.01470 -12.89594 -12.61117 -12.54892 -12.49819 -12.25909 -12.03934 -11.73521 -11.57744 -11.43652 -11.11053 -11.00636 -10.95888 -10.77583 -10.67931 -10.57741 -10.55881 -10.45789 -10.24106 -9.98561 -9.85181 -9.67123 -9.33315 -8.95847 -8.94720 -8.20257 -7.04040 -5.81251 -3.11127 1.73711 2.09827 2.83107 3.34046 3.40785 3.45728 3.46367 3.65237 4.12312 4.25210 4.35191 4.51068 4.57214 4.67687 4.79460 4.84146 4.96129 5.02886 5.07174 5.07876 5.22704 5.23903 5.29822 5.33398 5.40040 5.59411 5.61718 5.62261 5.64302 5.68206 5.71580 5.72833 5.80766 5.86422 5.88298 5.93759 5.94640 6.00978 6.03892 6.07489 6.28356 6.34550 6.36905 6.53854 6.66074 6.67948 6.70929 6.95700 7.03318 7.66125 7.83809 7.94847 8.36183 8.46562 9.48038 10.03010 10.38253 11.40814 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009816 B = 0.002799 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.686922 B =10001.227578 C =12339.188588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.083 0.917 4 C 0.114 3.886 5 N -0.600 5.600 6 C 0.612 3.388 7 O -0.550 6.550 8 C -0.007 4.007 9 C -0.177 4.177 10 C 0.017 3.983 11 C -0.015 4.015 12 C -0.113 4.113 13 C -0.119 4.119 14 C -0.122 4.122 15 C -0.117 4.117 16 C -0.121 4.121 17 N -0.379 5.379 18 H 0.442 0.558 19 N -0.237 5.237 20 C 0.084 3.916 21 C 0.174 3.826 22 H 0.067 0.933 23 N -0.710 5.710 24 C -0.243 4.243 25 H 0.071 0.929 26 C -0.010 4.010 27 N -0.931 5.931 28 Si 0.907 3.093 29 H -0.286 1.286 30 H -0.291 1.291 31 H -0.285 1.285 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.159 0.841 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.078 0.922 51 H 0.386 0.614 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.297 -11.015 -12.376 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 H 0.101 0.899 4 C -0.008 4.008 5 N -0.332 5.332 6 C 0.399 3.601 7 O -0.428 6.428 8 C -0.168 4.168 9 C -0.205 4.205 10 C -0.109 4.109 11 C -0.035 4.035 12 C -0.151 4.151 13 C -0.156 4.156 14 C -0.160 4.160 15 C -0.155 4.155 16 C -0.159 4.159 17 N -0.093 5.093 18 H 0.287 0.713 19 N -0.073 5.073 20 C -0.042 4.042 21 C 0.062 3.938 22 H 0.085 0.915 23 N -0.349 5.349 24 C -0.374 4.374 25 H 0.089 0.911 26 C -0.206 4.206 27 N -0.579 5.579 28 Si 0.738 3.262 29 H -0.213 1.213 30 H -0.217 1.217 31 H -0.212 1.212 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.177 0.823 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.096 0.904 51 H 0.221 0.779 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.751 -10.932 -11.833 21.843 hybrid contribution 0.729 -0.237 0.801 1.109 sum 15.480 -11.169 -11.032 22.047 Atomic orbital electron populations 1.21594 0.93873 1.01781 1.01692 1.22662 0.96293 0.99824 0.94742 0.89870 1.22290 0.82459 0.98186 0.97887 1.48354 1.11615 1.64576 1.08632 1.16549 0.81220 0.77305 0.85038 1.90749 1.82650 1.55550 1.13802 1.21850 0.96516 1.08806 0.89624 1.21431 0.91446 1.07347 1.00321 1.21318 0.97198 1.06650 0.85722 1.19798 0.87097 0.95826 1.00780 1.21615 0.97148 0.93766 1.02524 1.21537 0.94563 1.00431 0.99119 1.21574 0.99560 0.95534 0.99321 1.21507 0.95999 0.95820 1.02173 1.21645 0.95149 1.01010 0.98050 1.43411 1.08409 1.48839 1.08671 0.71314 1.73924 0.97513 1.15526 1.20289 1.23329 1.02373 1.01790 0.76680 1.21306 0.91948 0.93681 0.86849 0.91548 1.42325 1.86369 1.06141 1.00079 1.19199 1.42467 0.92463 0.83250 0.91104 1.24739 1.02576 0.95431 0.97842 1.69651 1.56311 1.02805 1.29083 0.86282 0.77856 0.77778 0.84323 1.21294 1.21724 1.21200 0.92829 0.91439 0.93236 0.90809 0.91507 0.82346 0.88522 0.91919 0.91168 0.91677 0.91746 0.91934 0.91955 0.91602 0.91686 0.91191 0.92093 0.91990 0.90374 0.77927 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 9.29 37.16 0.35 -1.57 16 2 C -0.12 -1.90 3.27 -88.47 -0.29 -2.19 16 3 H 0.08 1.46 8.01 -51.93 -0.42 1.04 16 4 C 0.11 1.82 6.37 -2.53 -0.02 1.80 16 5 N -0.60 -10.69 3.33 -171.67 -0.57 -11.26 16 6 C 0.61 11.31 7.86 -12.39 -0.10 11.21 16 7 O -0.55 -11.10 17.18 5.30 0.09 -11.01 16 8 C -0.01 -0.12 6.98 -82.77 -0.58 -0.69 16 9 C -0.18 -2.40 10.73 -39.36 -0.42 -2.83 16 10 C 0.02 0.18 5.92 -82.21 -0.49 -0.31 16 11 C -0.01 -0.11 2.59 -91.77 -0.24 -0.35 16 12 C -0.11 -0.77 5.19 -26.73 -0.14 -0.91 16 13 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 14 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 15 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 16 C -0.12 -0.80 4.96 -26.73 -0.13 -0.93 16 17 N -0.38 -4.52 6.64 33.50 0.22 -4.30 16 18 H 0.44 4.03 8.14 -190.44 -1.55 2.48 16 19 N -0.24 -3.75 9.76 33.42 0.33 -3.42 16 20 C 0.08 1.59 5.31 -3.06 -0.02 1.57 16 21 C 0.17 3.40 3.07 -66.09 -0.20 3.20 16 22 H 0.07 1.30 7.96 -51.92 -0.41 0.89 16 23 N -0.71 -17.08 5.16 -51.65 -0.27 -17.35 16 24 C -0.24 -6.48 9.96 -15.06 -0.15 -6.63 16 25 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 26 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 27 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 28 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 29 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 30 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 31 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 32 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16 36 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 37 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.38 7.43 -51.93 -0.39 -0.01 16 49 H 0.06 1.18 7.78 -51.93 -0.40 0.78 16 50 H 0.08 1.65 7.54 -51.93 -0.39 1.26 16 51 H 0.39 9.99 7.76 -40.82 -0.32 9.67 16 52 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 411.46 15.07 6.20 6.20 Total: -1.00 -31.94 411.46 -11.46 -43.40 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -10.17 Total: 9.02 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.99 Total: -1.44 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: 0.44 Total: -63.01 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.94 -11.46 -43.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054743317.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.945 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds