Wall clock time and date at job start Wed Apr 1 2020 05:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 110.91081 * 2 1 4 4 C 1.54910 * 111.00490 * 236.09956 * 2 1 3 5 5 N 1.47419 * 104.83143 * 204.91662 * 4 2 1 6 6 C 1.34773 * 125.65182 * 204.09129 * 5 4 2 7 7 O 1.21578 * 119.99640 * 359.97438 * 6 5 4 8 8 C 1.47707 * 120.00633 * 179.97438 * 6 5 4 9 9 C 1.41501 * 126.52018 * 180.02562 * 8 6 5 10 10 C 1.35369 * 105.50256 * 179.97438 * 9 8 6 11 11 C 1.50693 * 126.38503 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47365 * 265.02327 * 11 10 9 13 13 C 1.52996 * 109.47563 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47197 * 59.99839 * 13 12 11 15 15 C 1.52998 * 109.47353 * 300.00605 * 14 13 12 16 16 C 1.52996 * 109.47463 * 59.99558 * 15 14 13 17 17 N 1.35037 * 107.22862 * 359.97438 * 10 9 8 18 18 H 0.97001 * 124.88135 * 179.97438 * 17 10 9 19 19 N 1.28472 * 110.22907 * 0.26961 * 17 10 9 20 20 C 1.47031 * 108.70310 * 24.35314 * 5 4 2 21 21 C 1.54331 * 107.26371 * 358.58504 * 20 5 4 22 22 H 1.09008 * 110.51209 * 96.45266 * 21 20 5 23 23 N 1.46501 * 111.00113 * 219.59675 * 21 20 5 24 24 C 1.36935 * 120.00479 * 268.78581 * 23 21 20 25 25 H 1.07998 * 119.99644 * 0.02562 * 24 23 21 26 26 C 1.38807 * 119.99926 * 180.02562 * 24 23 21 27 27 N 1.31621 * 120.00509 * 359.97438 * 26 24 23 28 28 Si 1.86806 * 119.99817 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47153 * 59.99674 * 28 26 24 30 30 H 1.48500 * 109.47092 * 179.97438 * 28 26 24 31 31 H 1.48496 * 109.47190 * 299.99944 * 28 26 24 32 32 H 1.09000 * 109.46801 * 182.44786 * 1 2 3 33 33 H 1.09000 * 109.47174 * 302.44701 * 1 2 3 34 34 H 1.09004 * 109.47100 * 62.44709 * 1 2 3 35 35 H 1.08998 * 110.36822 * 86.07325 * 4 2 1 36 36 H 1.09007 * 110.36132 * 323.75075 * 4 2 1 37 37 H 1.08001 * 127.25024 * 359.97438 * 9 8 6 38 38 H 1.08997 * 109.47309 * 25.02563 * 11 10 9 39 39 H 1.08997 * 109.47099 * 300.00364 * 12 11 10 40 40 H 1.08999 * 109.46903 * 60.00107 * 12 11 10 41 41 H 1.09004 * 109.46905 * 300.00068 * 13 12 11 42 42 H 1.08997 * 109.47427 * 180.02562 * 13 12 11 43 43 H 1.09004 * 109.47692 * 180.02562 * 14 13 12 44 44 H 1.09004 * 109.47006 * 60.00291 * 14 13 12 45 45 H 1.09004 * 109.46807 * 299.99807 * 15 14 13 46 46 H 1.09004 * 109.47686 * 179.97438 * 15 14 13 47 47 H 1.08999 * 109.47566 * 180.02562 * 16 15 14 48 48 H 1.08997 * 109.47209 * 60.00082 * 16 15 14 49 49 H 1.08998 * 109.87833 * 118.13385 * 20 5 4 50 50 H 1.09003 * 109.88213 * 239.29564 * 20 5 4 51 51 H 0.97007 * 119.99257 * 88.78706 * 23 21 20 52 52 H 0.96998 * 120.00076 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4272 -1.2430 -0.7733 6 6 4.4477 -1.5615 -1.5939 7 8 4.3003 -1.5005 -2.7992 8 6 5.7453 -1.9847 -1.0291 9 6 6.9026 -2.3477 -1.7578 10 6 7.8346 -2.6572 -0.8260 11 6 9.2479 -3.1082 -1.0906 12 6 9.3075 -4.6369 -1.0721 13 6 10.7425 -5.0947 -1.3401 14 6 11.6670 -4.5352 -0.2571 15 6 11.6075 -3.0065 -0.2755 16 6 10.1725 -2.5486 -0.0075 17 7 7.2616 -2.4866 0.3848 18 1 7.7043 -2.6385 1.2344 19 7 6.0439 -2.1000 0.2495 20 6 3.4658 -1.2793 0.6960 21 6 2.0862 -0.8078 1.2022 22 1 1.4468 -1.6632 1.4210 23 7 2.2247 0.0486 2.3827 24 6 2.1954 -0.5026 3.6359 25 1 2.0705 -1.5688 3.7540 26 6 2.3261 0.3091 4.7543 27 7 2.4788 1.6085 4.6104 28 14 2.2853 -0.4428 6.4639 29 1 3.3928 -1.4227 6.6002 30 1 2.4450 0.6285 7.4797 31 1 0.9864 -1.1321 6.6706 32 1 -0.3633 -1.0267 0.0439 33 1 -0.3633 0.5514 0.8672 34 1 -0.3633 0.4754 -0.9111 35 1 2.1560 -0.1720 -2.0837 36 1 1.4519 -1.6704 -1.4024 37 1 7.0182 -2.3726 -2.8313 38 1 9.5688 -2.7439 -2.0665 39 1 8.9865 -5.0012 -0.0962 40 1 8.6485 -5.0355 -1.8434 41 1 11.0638 -4.7304 -2.3159 42 1 10.7848 -6.1838 -1.3273 43 1 12.6895 -4.8610 -0.4482 44 1 11.3457 -4.8995 0.7187 45 1 11.9288 -2.6422 -1.2513 46 1 12.2659 -2.6078 0.4964 47 1 10.1300 -1.4596 -0.0211 48 1 9.8511 -2.9130 0.9682 49 1 3.6602 -2.2963 1.0366 50 1 4.2424 -0.6084 1.0631 51 1 2.3372 1.0063 2.2765 52 1 2.5705 2.1755 5.3920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054743317.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:51 Heat of formation + Delta-G solvation = 8.851564 kcal Electronic energy + Delta-G solvation = -30676.522855 eV Core-core repulsion = 26675.778570 eV Total energy + Delta-G solvation = -4000.744285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.79925 -40.96187 -39.33832 -38.86093 -35.86269 -34.18417 -33.48035 -32.88534 -32.40657 -31.63426 -29.81799 -29.14570 -27.73711 -25.93227 -24.81148 -23.91391 -23.45834 -22.65968 -22.06023 -21.37937 -20.79525 -19.83820 -19.09969 -18.79563 -17.85378 -17.32890 -16.80928 -16.71467 -16.07468 -16.05081 -15.48881 -15.34887 -15.23360 -15.05098 -14.97736 -14.66124 -14.59525 -14.49229 -14.08092 -13.71660 -13.50378 -13.42134 -13.13691 -13.09868 -13.01017 -12.82714 -12.81086 -12.37174 -12.23738 -12.15304 -12.04889 -12.03570 -11.74058 -11.67682 -11.48765 -11.38921 -11.29185 -11.16779 -11.05564 -10.89637 -10.48092 -9.95746 -9.66355 -9.04438 -7.92789 -5.22430 0.49307 1.08042 1.49068 1.51145 1.57205 1.74887 2.10486 2.30161 2.57494 3.22600 3.38401 3.45928 3.60046 3.71583 3.83020 3.84001 3.91814 4.07750 4.19095 4.22471 4.27120 4.33484 4.39262 4.48000 4.51096 4.55155 4.57341 4.58708 4.65843 4.68086 4.72714 4.77000 4.91231 4.97408 5.02493 5.13108 5.13256 5.17271 5.19171 5.20883 5.24086 5.27445 5.33619 5.34982 5.39166 5.42779 5.50498 5.55669 5.56215 6.06117 6.27060 6.40868 6.77856 7.07641 7.34800 8.06167 8.31290 9.30030 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009816 B = 0.002799 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.686922 B =10001.227578 C =12339.188588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 H 0.070 0.930 4 C 0.116 3.884 5 N -0.602 5.602 6 C 0.608 3.392 7 O -0.572 6.572 8 C -0.035 4.035 9 C -0.193 4.193 10 C 0.043 3.957 11 C -0.010 4.010 12 C -0.110 4.110 13 C -0.116 4.116 14 C -0.122 4.122 15 C -0.115 4.115 16 C -0.120 4.120 17 N -0.367 5.367 18 H 0.454 0.546 19 N -0.266 5.266 20 C 0.105 3.895 21 C 0.169 3.831 22 H 0.071 0.929 23 N -0.719 5.719 24 C -0.239 4.239 25 H 0.078 0.922 26 C -0.070 4.070 27 N -0.968 5.968 28 Si 0.969 3.031 29 H -0.279 1.279 30 H -0.298 1.298 31 H -0.277 1.277 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.168 0.832 38 H 0.108 0.892 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.059 0.941 50 H 0.053 0.947 51 H 0.375 0.625 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.328 -12.713 -12.878 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.124 4.124 3 H 0.088 0.912 4 C -0.006 4.006 5 N -0.334 5.334 6 C 0.396 3.604 7 O -0.451 6.451 8 C -0.195 4.195 9 C -0.221 4.221 10 C -0.083 4.083 11 C -0.030 4.030 12 C -0.148 4.148 13 C -0.153 4.153 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.158 4.158 17 N -0.083 5.083 18 H 0.301 0.699 19 N -0.102 5.102 20 C -0.021 4.021 21 C 0.059 3.941 22 H 0.089 0.911 23 N -0.357 5.357 24 C -0.371 4.371 25 H 0.096 0.904 26 C -0.263 4.263 27 N -0.618 5.618 28 Si 0.799 3.201 29 H -0.205 1.205 30 H -0.225 1.225 31 H -0.203 1.203 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.185 0.815 38 H 0.126 0.874 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.071 0.929 51 H 0.207 0.793 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 15.773 -12.673 -12.353 23.707 hybrid contribution 0.481 0.242 0.886 1.036 sum 16.254 -12.431 -11.467 23.457 Atomic orbital electron populations 1.21550 0.91972 1.02622 1.02138 1.22560 0.97755 0.98684 0.93405 0.91159 1.22401 0.81777 0.98888 0.97530 1.48388 1.12412 1.64590 1.07988 1.16858 0.81855 0.76849 0.84854 1.90718 1.83189 1.56660 1.14528 1.21801 0.96647 1.10546 0.90479 1.21638 0.91109 1.08198 1.01205 1.21749 0.98056 1.03999 0.84504 1.19932 0.84903 0.96469 1.01721 1.21589 0.98141 0.92862 1.02207 1.21518 0.93486 1.00778 0.99518 1.21575 0.99981 0.95237 0.99114 1.21493 0.95088 0.96036 1.02614 1.21651 0.95743 1.00585 0.97848 1.43467 1.07513 1.47563 1.09783 0.69875 1.73837 0.99325 1.16838 1.20246 1.22878 1.00917 1.00808 0.77462 1.21483 0.92411 0.93725 0.86521 0.91097 1.42427 1.86518 1.05992 1.00787 1.19567 1.40421 0.92757 0.84312 0.90438 1.25500 1.03504 0.95855 1.01415 1.69810 1.58431 1.04077 1.29505 0.85276 0.78172 0.76804 0.79878 1.20512 1.22478 1.20330 0.91555 0.93371 0.90622 0.90169 0.89564 0.81478 0.87438 0.92247 0.91686 0.91075 0.91237 0.91086 0.92163 0.91135 0.91256 0.91831 0.91693 0.92250 0.92879 0.79312 0.94086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.29 71.98 0.67 -2.78 16 2 C -0.10 -3.38 3.27 -9.40 -0.03 -3.41 16 3 H 0.07 2.48 8.01 -2.38 -0.02 2.46 16 4 C 0.12 3.56 6.37 86.86 0.55 4.11 16 5 N -0.60 -21.44 3.33 -815.31 -2.71 -24.15 16 6 C 0.61 22.61 7.86 86.75 0.68 23.29 16 7 O -0.57 -23.09 17.18 -3.96 -0.07 -23.15 16 8 C -0.04 -1.18 6.98 42.46 0.30 -0.88 16 9 C -0.19 -5.16 10.73 22.41 0.24 -4.92 16 10 C 0.04 0.90 5.92 41.40 0.25 1.14 16 11 C -0.01 -0.13 2.59 -11.54 -0.03 -0.16 16 12 C -0.11 -1.29 5.19 30.59 0.16 -1.14 16 13 C -0.12 -1.02 5.92 30.59 0.18 -0.84 16 14 C -0.12 -1.01 5.92 30.59 0.18 -0.83 16 15 C -0.11 -1.02 5.92 30.59 0.18 -0.84 16 16 C -0.12 -1.36 4.96 30.59 0.15 -1.21 16 17 N -0.37 -8.53 6.64 -47.93 -0.32 -8.85 16 18 H 0.45 7.86 8.14 -219.99 -1.79 6.07 16 19 N -0.27 -8.46 9.76 -48.18 -0.47 -8.93 16 20 C 0.11 4.02 5.31 86.73 0.46 4.48 16 21 C 0.17 6.59 3.07 46.18 0.14 6.73 16 22 H 0.07 2.72 7.96 -2.38 -0.02 2.70 16 23 N -0.72 -35.13 5.16 -317.32 -1.64 -36.77 16 24 C -0.24 -12.80 9.96 84.03 0.84 -11.96 16 25 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 26 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 27 N -0.97 -58.17 13.06 21.65 0.28 -57.89 16 28 Si 0.97 45.12 29.55 68.60 2.03 47.14 16 29 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 30 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 31 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 32 H 0.07 1.66 8.11 -2.39 -0.02 1.64 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 2.39 8.04 -2.39 -0.02 2.37 16 36 H 0.09 2.34 8.04 -2.38 -0.02 2.32 16 37 H 0.17 4.03 8.06 -2.91 -0.02 4.01 16 38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 44 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 45 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 46 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 47 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.06 0.68 7.43 -2.39 -0.02 0.66 16 49 H 0.06 2.28 7.78 -2.39 -0.02 2.26 16 50 H 0.05 2.31 7.54 -2.39 -0.02 2.29 16 51 H 0.37 19.93 7.76 -92.70 -0.72 19.21 16 52 H 0.25 14.71 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -69.20 411.46 0.90 -68.30 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -1.59 Total: 36.98 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 5.38 Total: 7.32 kcal Atomic # 7 Polarization: -131.73 SS G_CDS: -4.86 Total: -136.59 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.07 Total: -23.15 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -69.20 0.90 -68.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054743317.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.154 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds