Wall clock time and date at job start Wed Apr 1 2020 05:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47159 * 2 1 4 4 C 1.50703 * 109.46659 * 119.99425 * 2 1 3 5 5 O 1.21288 * 120.00006 * 94.20799 * 4 2 1 6 6 N 1.34773 * 120.00287 * 274.20124 * 4 2 1 7 7 C 1.47418 * 125.65162 * 174.69382 * 6 4 2 8 8 C 1.54908 * 104.83348 * 204.16688 * 7 6 4 9 9 H 1.08998 * 111.01010 * 81.06404 * 8 7 6 10 10 C 1.50706 * 111.00316 * 204.91255 * 8 7 6 11 11 C 1.34674 * 125.98871 * 26.91437 * 10 8 7 12 12 N 1.36884 * 106.81351 * 179.84236 * 11 10 8 13 13 C 1.46502 * 126.39146 * 180.11556 * 12 11 10 14 14 C 1.35037 * 107.20623 * 0.41341 * 12 11 10 15 15 N 1.30497 * 108.70125 * 359.73916 * 14 12 11 16 16 C 1.55151 * 101.58224 * 322.98770 * 8 7 6 17 17 H 1.09005 * 110.87309 * 277.07198 * 16 8 7 18 18 N 1.46503 * 110.72170 * 153.86563 * 16 8 7 19 19 C 1.36940 * 119.99607 * 160.02521 * 18 16 8 20 20 H 1.07997 * 120.00481 * 0.02562 * 19 18 16 21 21 C 1.38819 * 119.99655 * 180.02562 * 19 18 16 22 22 N 1.31619 * 119.99462 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00055 * 179.72444 * 21 19 18 24 24 H 1.48499 * 109.46992 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47086 * 119.99395 * 23 21 19 26 26 H 1.48497 * 109.46847 * 239.99595 * 23 21 19 27 27 C 1.47025 * 125.64644 * 354.73622 * 6 4 2 28 28 C 1.52991 * 109.47311 * 239.99348 * 2 1 3 29 29 C 1.53781 * 113.61501 * 159.13690 * 28 2 1 30 30 C 1.53953 * 87.02146 * 220.04951 * 29 28 2 31 31 C 1.53776 * 87.11312 * 25.36408 * 30 29 28 32 32 H 1.08996 * 109.46823 * 64.82310 * 1 2 3 33 33 H 1.08997 * 109.47308 * 184.81767 * 1 2 3 34 34 H 1.08994 * 109.47215 * 304.81963 * 1 2 3 35 35 H 1.09000 * 110.36428 * 323.00333 * 7 6 4 36 36 H 1.08996 * 110.36926 * 85.21451 * 7 6 4 37 37 H 1.07994 * 126.59075 * 359.96047 * 11 10 8 38 38 H 1.09003 * 109.47156 * 270.32126 * 13 12 11 39 39 H 1.08998 * 109.47256 * 30.32722 * 13 12 11 40 40 H 1.09005 * 109.46501 * 150.32716 * 13 12 11 41 41 H 1.08008 * 125.65016 * 179.71539 * 14 12 11 42 42 H 0.96994 * 119.99793 * 340.02877 * 18 16 8 43 43 H 0.97008 * 119.99276 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.88186 * 59.48671 * 27 6 4 45 45 H 1.09003 * 109.88180 * 298.32147 * 27 6 4 46 46 H 1.09004 * 112.85459 * 290.33477 * 28 2 1 47 47 H 1.08997 * 113.61621 * 334.57111 * 29 28 2 48 48 H 1.08998 * 113.61468 * 105.47262 * 29 28 2 49 49 H 1.08996 * 113.54043 * 270.80943 * 30 29 28 50 50 H 1.09002 * 113.74511 * 139.94275 * 30 29 28 51 51 H 1.09001 * 113.61828 * 220.09190 * 31 30 29 52 52 H 1.08995 * 113.69443 * 89.19363 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.3070 -1.8906 1.1799 6 7 2.1762 -0.0341 2.3875 7 6 2.5493 -0.6231 3.6863 8 6 1.9890 0.3607 4.7436 9 1 0.9257 0.1898 4.9116 10 6 2.7601 0.2630 6.0347 11 6 4.0433 -0.1254 6.1626 12 7 4.3436 -0.0667 7.4968 13 6 5.6306 -0.3978 8.1135 14 6 3.2300 0.3467 8.1391 15 7 2.2871 0.5420 7.2583 16 6 2.2301 1.7295 4.0540 17 1 3.2532 2.0699 4.2137 18 7 1.2724 2.7282 4.5353 19 6 1.5425 4.0626 4.3877 20 1 2.4612 4.3787 3.9162 21 6 0.6353 5.0089 4.8442 22 7 -0.4847 4.6236 5.4184 23 14 1.0071 6.8292 4.6499 24 1 2.3234 6.9971 3.9833 25 1 -0.0509 7.4652 3.8246 26 1 1.0447 7.4722 5.9879 27 6 1.9864 1.4132 2.5633 28 6 2.0401 -0.7213 -1.2491 29 6 3.4868 -0.3577 -1.6229 30 6 3.0235 -0.3622 -3.0910 31 6 1.6122 -0.0511 -2.5654 32 1 -0.3633 0.4372 -0.9300 33 1 -0.3634 -1.0240 0.0863 34 1 -0.3633 0.5868 0.8436 35 1 2.0920 -1.6057 3.8026 36 1 3.6334 -0.6976 3.7718 37 1 4.7082 -0.4236 5.3656 38 1 5.6479 -1.4564 8.3725 39 1 6.4360 -0.1823 7.4113 40 1 5.7655 0.1992 9.0155 41 1 3.1353 0.4915 9.2053 42 1 0.4471 2.4443 4.9584 43 1 -1.1184 5.2849 5.7377 44 1 0.9689 1.6898 2.2872 45 1 2.7012 1.9584 1.9469 46 1 1.8521 -1.7948 -1.2245 47 1 3.7964 0.6244 -1.2657 48 1 4.2080 -1.1409 -1.3894 49 1 3.1057 -1.3375 -3.5705 50 1 3.4534 0.4411 -3.6894 51 1 0.8223 -0.5870 -3.0916 52 1 1.4069 1.0147 -2.4660 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070505771.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:53 Heat of formation + Delta-G solvation = 61.845233 kcal Electronic energy + Delta-G solvation = -31299.143978 eV Core-core repulsion = 27300.697670 eV Total energy + Delta-G solvation = -3998.446307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.84422 -40.20164 -38.65087 -37.17268 -34.06578 -33.90277 -32.94002 -31.51793 -30.57585 -28.26517 -27.37199 -26.74156 -26.16890 -25.26650 -24.31619 -23.34359 -22.02540 -20.94561 -20.67887 -19.49514 -19.33895 -18.67186 -17.38688 -16.89314 -16.64478 -15.78928 -15.62092 -15.47739 -15.13758 -14.66592 -14.51874 -14.17157 -14.01259 -13.70786 -13.39761 -13.10821 -13.04649 -12.91812 -12.82618 -12.71008 -12.58754 -12.53702 -12.41921 -11.93259 -11.86313 -11.64252 -11.48573 -11.33905 -11.08318 -10.84059 -10.75997 -10.52188 -10.39982 -10.35037 -10.14163 -10.03843 -9.73030 -9.54558 -9.43764 -9.26376 -8.94796 -8.27481 -8.06126 -6.97759 -5.75590 -3.05590 2.25904 2.89339 2.95280 3.26422 3.42644 3.46550 3.48396 3.50640 4.46413 4.56181 4.58766 4.62804 4.65768 4.73935 4.78790 4.95091 4.97903 5.00240 5.16809 5.20760 5.21464 5.26164 5.40155 5.43810 5.45267 5.62819 5.64716 5.66450 5.69190 5.74142 5.77680 5.80962 5.84327 5.87715 5.90517 5.96594 5.99779 6.05546 6.20557 6.24995 6.31628 6.39375 6.43517 6.48487 6.50878 6.63954 6.90210 7.01675 7.39714 7.69685 7.86826 8.40669 8.43166 8.46030 9.53455 10.08737 10.44312 11.46113 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007098 B = 0.003884 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3943.632266 B = 7207.365836 C =10201.101907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.091 0.909 4 C 0.535 3.465 5 O -0.555 6.555 6 N -0.612 5.612 7 C 0.120 3.880 8 C -0.027 4.027 9 H 0.096 0.904 10 C 0.040 3.960 11 C -0.066 4.066 12 N -0.468 5.468 13 C 0.076 3.924 14 C 0.177 3.823 15 N -0.468 5.468 16 C 0.187 3.813 17 H 0.063 0.937 18 N -0.705 5.705 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.006 4.006 22 N -0.924 5.924 23 Si 0.903 3.097 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.072 3.928 28 C -0.091 4.091 29 C -0.138 4.138 30 C -0.142 4.142 31 C -0.135 4.135 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.170 0.830 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.201 0.799 42 H 0.390 0.610 43 H 0.255 0.745 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.066 0.934 49 H 0.077 0.923 50 H 0.065 0.935 51 H 0.066 0.934 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.496 -11.976 -5.548 16.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.109 0.891 4 C 0.324 3.676 5 O -0.433 6.433 6 N -0.345 5.345 7 C -0.003 4.003 8 C -0.048 4.048 9 H 0.114 0.886 10 C -0.090 4.090 11 C -0.198 4.198 12 N -0.152 5.152 13 C -0.067 4.067 14 C -0.105 4.105 15 N -0.185 5.185 16 C 0.074 3.926 17 H 0.080 0.920 18 N -0.345 5.345 19 C -0.375 4.375 20 H 0.088 0.912 21 C -0.203 4.203 22 N -0.571 5.571 23 Si 0.734 3.266 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.054 4.054 28 C -0.110 4.110 29 C -0.175 4.175 30 C -0.179 4.179 31 C -0.173 4.173 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.187 0.813 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.218 0.782 42 H 0.225 0.775 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.117 0.883 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.084 0.916 51 H 0.085 0.915 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.028 -12.196 -5.396 16.686 hybrid contribution 0.846 0.891 0.107 1.234 sum 10.875 -11.305 -5.289 16.554 Atomic orbital electron populations 1.21670 0.92495 1.02595 1.02923 1.21272 0.97802 1.00325 0.92383 0.89080 1.20301 0.77099 0.86706 0.83514 1.90635 1.51693 1.16203 1.84818 1.48538 1.68000 1.09994 1.08013 1.22108 0.99323 0.96981 0.81925 1.20823 0.99535 0.96178 0.88287 0.88566 1.20093 0.91843 1.03823 0.93213 1.22345 0.99039 1.12883 0.85519 1.45350 1.11821 1.50883 1.07189 1.21959 0.83412 1.01824 0.99478 1.24974 0.81906 1.03948 0.99700 1.70215 1.29907 1.18917 0.99461 1.21143 0.95026 0.87813 0.88590 0.91950 1.42298 1.21159 1.01310 1.69684 1.19228 1.02947 0.82435 1.32927 0.91220 1.24726 0.96821 0.97766 1.01001 1.69688 1.10183 1.32558 1.44704 0.86185 0.77315 0.85839 0.77213 1.20617 1.21851 1.21919 1.23412 1.01894 0.78311 1.01816 1.22433 0.95950 1.00543 0.92075 1.22985 0.96736 1.01772 0.96052 1.22808 0.97008 1.01608 0.96487 1.22949 0.96885 1.01041 0.96378 0.91409 0.92287 0.91591 0.90763 0.91777 0.81311 0.90921 0.89962 0.89677 0.78243 0.77531 0.93520 0.90479 0.92236 0.88258 0.90248 0.91560 0.90416 0.91607 0.91530 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.07 37.16 0.34 -1.38 16 2 C -0.10 -1.26 2.01 -91.77 -0.18 -1.45 16 3 H 0.09 1.16 7.12 -51.93 -0.37 0.79 16 4 C 0.53 8.56 6.92 -10.99 -0.08 8.48 16 5 O -0.55 -10.30 16.29 5.55 0.09 -10.21 16 6 N -0.61 -9.77 3.33 -170.52 -0.57 -10.33 16 7 C 0.12 1.85 6.20 -2.53 -0.02 1.84 16 8 C -0.03 -0.47 3.18 -89.62 -0.28 -0.76 16 9 H 0.10 1.84 8.00 -51.93 -0.42 1.43 16 10 C 0.04 0.70 6.19 -82.85 -0.51 0.18 16 11 C -0.07 -0.93 10.68 -16.56 -0.18 -1.11 16 12 N -0.47 -5.75 3.15 -125.99 -0.40 -6.15 16 13 C 0.08 0.54 11.18 59.85 0.67 1.21 16 14 C 0.18 2.55 12.56 -90.38 -1.14 1.42 16 15 N -0.47 -8.80 11.25 -10.87 -0.12 -8.93 16 16 C 0.19 3.62 3.05 -66.10 -0.20 3.42 16 17 H 0.06 1.25 8.02 -51.93 -0.42 0.83 16 18 N -0.70 -17.12 5.18 -51.65 -0.27 -17.39 16 19 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16 20 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -27.56 13.06 55.49 0.72 -26.83 16 23 Si 0.90 22.01 29.55 -169.99 -5.02 16.99 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 C 0.07 1.22 5.84 -3.06 -0.02 1.20 16 28 C -0.09 -1.07 2.76 -89.81 -0.25 -1.32 16 29 C -0.14 -1.52 7.62 -25.83 -0.20 -1.71 16 30 C -0.14 -1.31 8.09 -25.83 -0.21 -1.52 16 31 C -0.14 -1.30 6.66 -25.92 -0.17 -1.47 16 32 H 0.07 0.71 7.34 -51.93 -0.38 0.33 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.88 7.59 -51.93 -0.39 0.49 16 35 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 36 H 0.06 0.90 6.35 -51.93 -0.33 0.57 16 37 H 0.17 1.95 6.87 -52.49 -0.36 1.59 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.20 2.11 8.06 -52.48 -0.42 1.69 16 42 H 0.39 10.39 7.71 -40.82 -0.31 10.07 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.08 1.41 7.47 -51.93 -0.39 1.02 16 45 H 0.06 0.96 8.01 -51.93 -0.42 0.54 16 46 H 0.10 1.30 7.67 -51.93 -0.40 0.90 16 47 H 0.08 0.86 7.99 -51.93 -0.41 0.45 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 416.27 15.07 6.27 6.27 Total: -1.00 -34.02 416.27 -10.75 -44.78 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -8.79 Total: 11.75 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -2.67 Total: 0.05 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -0.63 Total: -69.63 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.02 -10.75 -44.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070505771.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.621 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds