Wall clock time and date at job start Wed Apr 1 2020 05:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47159 * 2 1 4 4 C 1.50703 * 109.46659 * 119.99425 * 2 1 3 5 5 O 1.21288 * 120.00006 * 94.20799 * 4 2 1 6 6 N 1.34773 * 120.00287 * 274.20124 * 4 2 1 7 7 C 1.47418 * 125.65162 * 174.69382 * 6 4 2 8 8 C 1.54908 * 104.83348 * 204.16688 * 7 6 4 9 9 H 1.08998 * 111.01010 * 81.06404 * 8 7 6 10 10 C 1.50706 * 111.00316 * 204.91255 * 8 7 6 11 11 C 1.34674 * 125.98871 * 26.91437 * 10 8 7 12 12 N 1.36884 * 106.81351 * 179.84236 * 11 10 8 13 13 C 1.46502 * 126.39146 * 180.11556 * 12 11 10 14 14 C 1.35037 * 107.20623 * 0.41341 * 12 11 10 15 15 N 1.30497 * 108.70125 * 359.73916 * 14 12 11 16 16 C 1.55151 * 101.58224 * 322.98770 * 8 7 6 17 17 H 1.09005 * 110.87309 * 277.07198 * 16 8 7 18 18 N 1.46503 * 110.72170 * 153.86563 * 16 8 7 19 19 C 1.36940 * 119.99607 * 160.02521 * 18 16 8 20 20 H 1.07997 * 120.00481 * 0.02562 * 19 18 16 21 21 C 1.38819 * 119.99655 * 180.02562 * 19 18 16 22 22 N 1.31619 * 119.99462 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00055 * 179.72444 * 21 19 18 24 24 H 1.48499 * 109.46992 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47086 * 119.99395 * 23 21 19 26 26 H 1.48497 * 109.46847 * 239.99595 * 23 21 19 27 27 C 1.47025 * 125.64644 * 354.73622 * 6 4 2 28 28 C 1.52991 * 109.47311 * 239.99348 * 2 1 3 29 29 C 1.53781 * 113.61501 * 159.13690 * 28 2 1 30 30 C 1.53953 * 87.02146 * 220.04951 * 29 28 2 31 31 C 1.53776 * 87.11312 * 25.36408 * 30 29 28 32 32 H 1.08996 * 109.46823 * 64.82310 * 1 2 3 33 33 H 1.08997 * 109.47308 * 184.81767 * 1 2 3 34 34 H 1.08994 * 109.47215 * 304.81963 * 1 2 3 35 35 H 1.09000 * 110.36428 * 323.00333 * 7 6 4 36 36 H 1.08996 * 110.36926 * 85.21451 * 7 6 4 37 37 H 1.07994 * 126.59075 * 359.96047 * 11 10 8 38 38 H 1.09003 * 109.47156 * 270.32126 * 13 12 11 39 39 H 1.08998 * 109.47256 * 30.32722 * 13 12 11 40 40 H 1.09005 * 109.46501 * 150.32716 * 13 12 11 41 41 H 1.08008 * 125.65016 * 179.71539 * 14 12 11 42 42 H 0.96994 * 119.99793 * 340.02877 * 18 16 8 43 43 H 0.97008 * 119.99276 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.88186 * 59.48671 * 27 6 4 45 45 H 1.09003 * 109.88180 * 298.32147 * 27 6 4 46 46 H 1.09004 * 112.85459 * 290.33477 * 28 2 1 47 47 H 1.08997 * 113.61621 * 334.57111 * 29 28 2 48 48 H 1.08998 * 113.61468 * 105.47262 * 29 28 2 49 49 H 1.08996 * 113.54043 * 270.80943 * 30 29 28 50 50 H 1.09002 * 113.74511 * 139.94275 * 30 29 28 51 51 H 1.09001 * 113.61828 * 220.09190 * 31 30 29 52 52 H 1.08995 * 113.69443 * 89.19363 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.3070 -1.8906 1.1799 6 7 2.1762 -0.0341 2.3875 7 6 2.5493 -0.6231 3.6863 8 6 1.9890 0.3607 4.7436 9 1 0.9257 0.1898 4.9116 10 6 2.7601 0.2630 6.0347 11 6 4.0433 -0.1254 6.1626 12 7 4.3436 -0.0667 7.4968 13 6 5.6306 -0.3978 8.1135 14 6 3.2300 0.3467 8.1391 15 7 2.2871 0.5420 7.2583 16 6 2.2301 1.7295 4.0540 17 1 3.2532 2.0699 4.2137 18 7 1.2724 2.7282 4.5353 19 6 1.5425 4.0626 4.3877 20 1 2.4612 4.3787 3.9162 21 6 0.6353 5.0089 4.8442 22 7 -0.4847 4.6236 5.4184 23 14 1.0071 6.8292 4.6499 24 1 2.3234 6.9971 3.9833 25 1 -0.0509 7.4652 3.8246 26 1 1.0447 7.4722 5.9879 27 6 1.9864 1.4132 2.5633 28 6 2.0401 -0.7213 -1.2491 29 6 3.4868 -0.3577 -1.6229 30 6 3.0235 -0.3622 -3.0910 31 6 1.6122 -0.0511 -2.5654 32 1 -0.3633 0.4372 -0.9300 33 1 -0.3634 -1.0240 0.0863 34 1 -0.3633 0.5868 0.8436 35 1 2.0920 -1.6057 3.8026 36 1 3.6334 -0.6976 3.7718 37 1 4.7082 -0.4236 5.3656 38 1 5.6479 -1.4564 8.3725 39 1 6.4360 -0.1823 7.4113 40 1 5.7655 0.1992 9.0155 41 1 3.1353 0.4915 9.2053 42 1 0.4471 2.4443 4.9584 43 1 -1.1184 5.2849 5.7377 44 1 0.9689 1.6898 2.2872 45 1 2.7012 1.9584 1.9469 46 1 1.8521 -1.7948 -1.2245 47 1 3.7964 0.6244 -1.2657 48 1 4.2080 -1.1409 -1.3894 49 1 3.1057 -1.3375 -3.5705 50 1 3.4534 0.4411 -3.6894 51 1 0.8223 -0.5870 -3.0916 52 1 1.4069 1.0147 -2.4660 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070505771.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:52 Heat of formation + Delta-G solvation = 42.428018 kcal Electronic energy + Delta-G solvation = -31299.985971 eV Core-core repulsion = 27300.697670 eV Total energy + Delta-G solvation = -3999.288301 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.95630 -41.41086 -39.74019 -38.50313 -35.80792 -35.04309 -34.05272 -33.08454 -32.13342 -29.51566 -28.86981 -27.65872 -27.06977 -26.11258 -25.93215 -24.85969 -23.11013 -22.22055 -21.99111 -20.68294 -20.38022 -19.88315 -19.09296 -18.25327 -17.85963 -16.97805 -16.93913 -16.44005 -16.34928 -16.04096 -15.63347 -15.44897 -15.32676 -15.02188 -14.87679 -14.60711 -14.26067 -14.05806 -14.01072 -13.69933 -13.47171 -13.35934 -13.30429 -13.27874 -13.10777 -13.05066 -12.87638 -12.61249 -12.50955 -12.48232 -12.12314 -12.07506 -11.75441 -11.71193 -11.39737 -11.23054 -11.02567 -11.00554 -10.73356 -10.65104 -10.36185 -9.63498 -9.28353 -8.93769 -7.88067 -5.17777 1.18357 1.49736 1.50453 1.59951 1.61299 1.97227 2.06726 2.24286 2.59365 3.34757 3.41656 3.53840 3.67984 3.76481 3.82774 3.87141 3.98258 4.03197 4.05476 4.08453 4.12112 4.29404 4.31395 4.35778 4.40894 4.43251 4.45398 4.50766 4.62582 4.70617 4.75776 4.78178 4.80978 4.87172 4.90589 4.91057 4.96051 5.01379 5.08542 5.11329 5.15310 5.23751 5.26226 5.38121 5.38397 5.43088 5.56675 5.66436 5.85664 6.30606 6.41452 6.53807 7.14571 7.30674 7.38272 8.10629 8.35583 9.35161 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007098 B = 0.003884 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3943.632266 B = 7207.365836 C =10201.101907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.098 0.902 4 C 0.532 3.468 5 O -0.581 6.581 6 N -0.612 5.612 7 C 0.128 3.872 8 C -0.015 4.015 9 H 0.066 0.934 10 C -0.001 4.001 11 C -0.051 4.051 12 N -0.460 5.460 13 C 0.068 3.932 14 C 0.174 3.826 15 N -0.532 5.532 16 C 0.185 3.815 17 H 0.061 0.939 18 N -0.716 5.716 19 C -0.236 4.236 20 H 0.079 0.921 21 C -0.070 4.070 22 N -0.966 5.966 23 Si 0.967 3.033 24 H -0.263 1.263 25 H -0.294 1.294 26 H -0.300 1.300 27 C 0.089 3.911 28 C -0.096 4.096 29 C -0.142 4.142 30 C -0.133 4.133 31 C -0.127 4.127 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.197 0.803 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.231 0.769 42 H 0.374 0.626 43 H 0.249 0.751 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.055 0.945 49 H 0.083 0.917 50 H 0.078 0.922 51 H 0.076 0.924 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.125 -12.018 -6.711 19.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 H 0.116 0.884 4 C 0.323 3.677 5 O -0.461 6.461 6 N -0.345 5.345 7 C 0.004 3.996 8 C -0.036 4.036 9 H 0.084 0.916 10 C -0.130 4.130 11 C -0.185 4.185 12 N -0.143 5.143 13 C -0.072 4.072 14 C -0.109 4.109 15 N -0.250 5.250 16 C 0.074 3.926 17 H 0.079 0.921 18 N -0.355 5.355 19 C -0.367 4.367 20 H 0.097 0.903 21 C -0.262 4.262 22 N -0.616 5.616 23 Si 0.797 3.203 24 H -0.188 1.188 25 H -0.221 1.221 26 H -0.228 1.228 27 C -0.037 4.037 28 C -0.115 4.115 29 C -0.180 4.180 30 C -0.171 4.171 31 C -0.165 4.165 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.213 0.787 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.247 0.753 42 H 0.206 0.794 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.074 0.926 49 H 0.102 0.898 50 H 0.097 0.903 51 H 0.095 0.905 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.736 -12.270 -6.578 18.869 hybrid contribution 0.117 0.771 0.550 0.954 sum 12.853 -11.499 -6.028 18.269 Atomic orbital electron populations 1.21653 0.91997 1.02169 1.03472 1.21336 0.98097 1.00399 0.91538 0.88398 1.20859 0.76336 0.86477 0.84042 1.90621 1.52866 1.17381 1.85254 1.48565 1.68003 1.09493 1.08405 1.22082 1.00384 0.96074 0.81014 1.20576 0.98183 0.95318 0.89487 0.91579 1.20140 0.93444 1.06695 0.92704 1.22650 0.98036 1.10824 0.86988 1.45627 1.13002 1.49165 1.06481 1.22359 0.81061 1.03462 1.00368 1.25498 0.81872 1.02942 1.00546 1.70107 1.32706 1.21344 1.00875 1.21263 0.93587 0.87794 0.89939 0.92102 1.42405 1.21408 1.01587 1.70061 1.19612 1.02581 0.83558 1.30972 0.90312 1.25491 0.97015 1.01823 1.01892 1.69859 1.11428 1.33444 1.46888 0.85167 0.77669 0.80894 0.76589 1.18758 1.22077 1.22758 1.22998 1.01535 0.79105 1.00060 1.22431 0.96964 0.99677 0.92431 1.23021 0.95899 1.01461 0.97582 1.22787 0.96392 1.02458 0.95420 1.22937 0.97531 1.01284 0.94705 0.89093 0.92836 0.93133 0.91123 0.89591 0.78659 0.88994 0.88438 0.87725 0.75270 0.79421 0.94255 0.91866 0.90635 0.89849 0.90057 0.92573 0.89817 0.90328 0.90529 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.07 71.98 0.65 -2.60 16 2 C -0.09 -2.34 2.01 -11.54 -0.02 -2.36 16 3 H 0.10 2.34 7.12 -2.39 -0.02 2.32 16 4 C 0.53 16.83 6.92 87.66 0.61 17.44 16 5 O -0.58 -21.45 16.29 -3.05 -0.05 -21.50 16 6 N -0.61 -19.35 3.33 -811.79 -2.70 -22.05 16 7 C 0.13 3.91 6.20 86.86 0.54 4.45 16 8 C -0.01 -0.53 3.18 -10.15 -0.03 -0.56 16 9 H 0.07 2.73 8.00 -2.39 -0.02 2.71 16 10 C 0.00 -0.02 6.19 41.39 0.26 0.23 16 11 C -0.05 -1.36 10.68 83.09 0.89 -0.48 16 12 N -0.46 -10.32 3.15 -552.52 -1.74 -12.06 16 13 C 0.07 0.72 11.18 127.77 1.43 2.15 16 14 C 0.17 4.88 12.56 180.27 2.26 7.14 16 15 N -0.53 -20.50 11.25 -188.31 -2.12 -22.62 16 16 C 0.19 7.24 3.05 46.18 0.14 7.38 16 17 H 0.06 2.41 8.02 -2.38 -0.02 2.39 16 18 N -0.72 -35.84 5.18 -317.32 -1.64 -37.48 16 19 C -0.24 -12.73 9.98 84.03 0.84 -11.89 16 20 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 21 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 22 N -0.97 -59.52 13.06 21.65 0.28 -59.23 16 23 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 24 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 27 C 0.09 3.00 5.84 86.73 0.51 3.51 16 28 C -0.10 -2.14 2.76 -10.27 -0.03 -2.17 16 29 C -0.14 -2.90 7.62 31.18 0.24 -2.67 16 30 C -0.13 -2.14 8.09 31.18 0.25 -1.88 16 31 C -0.13 -2.14 6.66 31.12 0.21 -1.93 16 32 H 0.09 1.75 7.34 -2.39 -0.02 1.73 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.36 7.59 -2.39 -0.02 1.34 16 35 H 0.07 2.23 8.09 -2.39 -0.02 2.21 16 36 H 0.09 2.26 6.35 -2.39 -0.02 2.25 16 37 H 0.20 3.94 6.87 -2.91 -0.02 3.92 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.23 4.53 8.06 -2.91 -0.02 4.51 16 42 H 0.37 20.98 7.71 -92.71 -0.72 20.26 16 43 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 44 H 0.06 2.34 7.47 -2.39 -0.02 2.32 16 45 H 0.08 2.32 8.01 -2.39 -0.02 2.30 16 46 H 0.08 2.14 7.67 -2.38 -0.02 2.12 16 47 H 0.08 1.62 7.99 -2.39 -0.02 1.60 16 48 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.09 1.41 8.10 -2.39 -0.02 1.39 16 Total: -1.00 -76.43 416.27 3.45 -72.98 By element: Atomic # 1 Polarization: 41.79 SS G_CDS: 0.19 Total: 41.98 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 9.20 Total: 12.28 kcal Atomic # 7 Polarization: -145.52 SS G_CDS: -7.92 Total: -153.44 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.05 Total: -21.50 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -76.43 3.45 -72.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070505771.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.410 kcal (2) G-P(sol) polarization free energy of solvation -76.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds