Wall clock time and date at job start Wed Apr 1 2020 05:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.91791 * 2 1 4 4 C 1.54916 * 111.00097 * 236.10397 * 2 1 3 5 5 N 1.47425 * 104.82925 * 204.91608 * 4 2 1 6 6 C 1.36938 * 125.64396 * 204.16470 * 5 4 2 7 7 H 1.07994 * 120.00714 * 354.83108 * 6 5 4 8 8 C 1.38817 * 119.99760 * 174.83686 * 6 5 4 9 9 N 1.31621 * 120.00093 * 7.06129 * 8 6 5 10 10 Si 1.86802 * 120.00053 * 187.05912 * 8 6 5 11 11 H 1.48501 * 109.46907 * 94.98523 * 10 8 6 12 12 H 1.48496 * 109.47377 * 214.98668 * 10 8 6 13 13 H 1.48501 * 109.47212 * 334.98993 * 10 8 6 14 14 C 1.47022 * 108.70707 * 24.12744 * 5 4 2 15 15 C 1.54328 * 107.26739 * 358.93998 * 14 5 4 16 16 H 1.09003 * 110.71839 * 96.16964 * 15 14 5 17 17 N 1.46494 * 110.71857 * 219.26461 * 15 14 5 18 18 C 1.34778 * 120.00383 * 271.16024 * 17 15 14 19 19 O 1.21608 * 119.99909 * 0.02562 * 18 17 15 20 20 C 1.47435 * 120.00302 * 180.02562 * 18 17 15 21 21 C 1.41290 * 126.41356 * 0.02562 * 20 18 17 22 22 N 1.30447 * 108.02333 * 179.97438 * 21 20 18 23 23 N 1.39933 * 108.89295 * 0.02562 * 22 21 20 24 24 C 1.46506 * 125.75176 * 180.02562 * 23 22 21 25 25 C 1.53000 * 109.47032 * 304.97316 * 24 23 22 26 26 C 1.54273 * 110.03499 * 292.16918 * 25 24 23 27 27 C 1.54881 * 104.19720 * 217.10579 * 26 25 24 28 28 C 1.54893 * 102.74902 * 37.93707 * 27 26 25 29 29 C 1.53866 * 110.03592 * 175.00086 * 25 24 23 30 30 C 1.34257 * 108.49829 * 359.74959 * 23 22 21 31 31 H 1.09005 * 109.46766 * 296.09740 * 1 2 3 32 32 H 1.08995 * 109.47196 * 56.09190 * 1 2 3 33 33 H 1.08998 * 109.47513 * 176.09814 * 1 2 3 34 34 H 1.08996 * 110.36701 * 86.07726 * 4 2 1 35 35 H 1.09001 * 110.46014 * 323.80132 * 4 2 1 36 36 H 0.96998 * 120.00290 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.88197 * 239.52607 * 14 5 4 38 38 H 1.08997 * 110.01106 * 118.42458 * 14 5 4 39 39 H 0.97008 * 120.00158 * 91.15854 * 17 15 14 40 40 H 1.07997 * 125.98686 * 359.97438 * 21 20 18 41 41 H 1.08993 * 109.47027 * 64.97106 * 24 23 22 42 42 H 1.09001 * 109.47348 * 184.97465 * 24 23 22 43 43 H 1.09003 * 110.01384 * 53.60745 * 25 24 23 44 44 H 1.09000 * 110.48371 * 335.78520 * 26 25 24 45 45 H 1.08997 * 110.48475 * 98.42416 * 26 25 24 46 46 H 1.09003 * 110.75690 * 279.62807 * 27 26 25 47 47 H 1.08996 * 110.76025 * 156.25085 * 27 26 25 48 48 H 1.09005 * 110.48798 * 203.37715 * 28 27 26 49 49 H 1.09001 * 110.59543 * 80.79564 * 28 27 26 50 50 H 1.09000 * 110.03726 * 238.57623 * 29 25 24 51 51 H 1.09003 * 110.02933 * 359.95135 * 29 25 24 52 52 H 1.08002 * 126.29788 * 180.24811 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2005 5 7 3.4270 -1.2430 -0.7735 6 6 4.4643 -1.5653 -1.6075 7 1 4.3103 -1.5904 -2.6761 8 6 5.7138 -1.8598 -1.0792 9 7 5.8692 -1.9659 0.2235 10 14 7.1747 -2.1055 -2.2172 11 1 7.9220 -0.8287 -2.3459 12 1 8.0699 -3.1486 -1.6554 13 1 6.6934 -2.5343 -3.5550 14 6 3.4675 -1.2742 0.6958 15 6 2.0862 -0.8080 1.2021 16 1 1.4468 -1.6633 1.4207 17 7 2.2285 0.0459 2.3839 18 6 2.2520 -0.5043 3.6140 19 8 2.1554 -1.7096 3.7429 20 6 2.3946 0.3552 4.8034 21 6 2.5160 1.7628 4.8114 22 7 2.6207 2.1519 6.0520 23 7 2.5726 1.0284 6.8848 24 6 2.6576 1.0428 8.3474 25 6 3.9324 1.7714 8.7771 26 6 5.1732 0.9485 8.3730 27 6 6.1655 1.1577 9.5437 28 6 5.2366 1.1569 10.7833 29 6 3.9729 1.9039 10.3095 30 6 2.4295 -0.0643 6.1181 31 1 -0.3633 0.4521 0.9230 32 1 -0.3633 0.5733 -0.8528 33 1 -0.3634 -1.0252 -0.0699 34 1 2.1559 -0.1719 -2.0837 35 1 1.4523 -1.6703 -1.4045 36 1 6.7424 -2.1713 0.5926 37 1 4.2426 -0.5998 1.0597 38 1 3.6661 -2.2885 1.0420 39 1 2.3059 1.0074 2.2811 40 1 2.5211 2.4042 3.9425 41 1 1.7889 1.5584 8.7567 42 1 2.6813 0.0187 8.7200 43 1 3.9716 2.7583 8.3158 44 1 4.9160 -0.1061 8.2747 45 1 5.5958 1.3275 7.4425 46 1 6.6804 2.1136 9.4476 47 1 6.8800 0.3363 9.5960 48 1 5.7056 1.6878 11.6118 49 1 4.9893 0.1366 11.0765 50 1 4.0324 2.9550 10.5920 51 1 3.0838 1.4499 10.7470 52 1 2.3572 -1.0843 6.4658 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080680806.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:25 Heat of formation + Delta-G solvation = 49.181978 kcal Electronic energy + Delta-G solvation = -30414.322834 eV Core-core repulsion = 26415.327407 eV Total energy + Delta-G solvation = -3998.995427 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.41992 -39.16465 -38.57894 -37.24550 -33.91765 -33.58922 -32.48113 -30.48543 -30.31596 -29.73024 -29.03311 -27.60238 -25.64193 -25.33829 -23.75554 -22.46240 -21.30251 -20.92015 -20.41702 -19.95653 -19.83374 -19.22801 -17.83637 -16.81693 -16.33579 -15.77282 -15.72717 -15.44399 -15.29444 -14.86884 -14.35139 -14.17973 -14.00270 -13.73840 -13.64917 -13.37704 -13.04018 -12.91792 -12.72511 -12.62586 -12.56548 -11.91190 -11.67782 -11.62350 -11.52632 -11.40414 -11.33147 -11.27359 -11.17156 -10.98802 -10.94743 -10.75892 -10.74473 -10.50151 -10.31810 -9.91927 -9.86386 -9.63202 -9.61503 -9.39834 -8.70184 -8.53397 -8.27651 -6.76418 -5.64196 -2.98240 1.59704 2.21983 2.26115 3.44219 3.48980 3.51720 3.69250 3.86152 4.07532 4.14235 4.21257 4.49036 4.55765 4.72802 4.80891 4.85359 4.87408 5.05242 5.13308 5.19328 5.24297 5.26615 5.33151 5.35054 5.37689 5.45271 5.52322 5.52463 5.59860 5.60920 5.74803 5.76002 5.85361 5.86809 5.92373 6.02989 6.06090 6.07882 6.22882 6.27809 6.39942 6.44466 6.57422 6.69663 6.75777 6.89866 7.04273 7.49604 7.63742 7.70689 7.93145 8.08617 8.32433 8.78194 9.27598 9.88610 10.54403 11.46472 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011751 B = 0.002450 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.118765 B =11427.805502 C =13253.752386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.079 0.921 8 C -0.007 4.007 9 N -0.915 5.915 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.281 1.281 14 C 0.172 3.828 15 C 0.123 3.877 16 H 0.087 0.913 17 N -0.708 5.708 18 C 0.592 3.408 19 O -0.550 6.550 20 C -0.282 4.282 21 C 0.080 3.920 22 N -0.297 5.297 23 N -0.360 5.360 24 C 0.138 3.862 25 C -0.105 4.105 26 C -0.120 4.120 27 C -0.125 4.125 28 C -0.125 4.125 29 C -0.117 4.117 30 C 0.123 3.877 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.021 0.979 36 H 0.252 0.748 37 H 0.052 0.948 38 H 0.045 0.955 39 H 0.393 0.607 40 H 0.188 0.812 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.069 0.931 51 H 0.067 0.933 52 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.073 9.868 20.125 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.359 4.359 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.562 5.562 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.047 3.953 15 C 0.018 3.982 16 H 0.105 0.895 17 N -0.357 5.357 18 C 0.379 3.621 19 O -0.429 6.429 20 C -0.297 4.297 21 C -0.107 4.107 22 N -0.117 5.117 23 N -0.139 5.139 24 C 0.017 3.983 25 C -0.124 4.124 26 C -0.157 4.157 27 C -0.163 4.163 28 C -0.163 4.163 29 C -0.156 4.156 30 C -0.028 4.028 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.039 0.961 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.227 0.773 40 H 0.205 0.795 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.087 0.913 51 H 0.085 0.915 52 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.782 9.925 21.166 24.638 hybrid contribution 0.864 -0.373 -1.176 1.507 sum -6.918 9.552 19.989 23.209 Atomic orbital electron populations 1.21696 0.95110 1.01737 1.00935 1.22605 0.94756 0.99531 0.96452 0.90465 1.21588 0.87647 0.94969 0.94356 1.44423 1.08042 1.78974 1.01858 1.19043 0.87391 1.40328 0.89096 0.90365 1.24846 0.97608 1.01952 0.95967 1.70003 1.22426 1.54318 1.09471 0.86140 0.82909 0.77328 0.79653 1.21704 1.21827 1.20649 1.21484 0.90291 1.00343 0.83225 1.22440 1.00137 0.92772 0.82807 0.89493 1.45662 1.74350 1.10223 1.05497 1.17175 0.75919 0.86842 0.82149 1.90769 1.51056 1.14535 1.86491 1.20364 1.21908 0.93768 0.93688 1.24050 0.97313 0.93966 0.95418 1.77085 1.24907 1.08448 1.01305 1.48486 1.54417 1.04191 1.06830 1.22030 0.99445 1.02833 0.74008 1.22113 0.93555 1.00580 0.96162 1.22428 0.94841 0.99807 0.98649 1.22494 0.97503 1.01884 0.94383 1.22368 0.95601 1.00479 0.97809 1.22143 0.98516 1.01119 0.93772 1.22940 0.96005 0.93418 0.90463 0.93072 0.92874 0.92639 0.94026 0.96131 0.93803 0.93011 0.93679 0.77296 0.79546 0.89525 0.88346 0.89271 0.91533 0.91415 0.91439 0.91395 0.91618 0.91524 0.91263 0.91474 0.79802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.31 37.16 0.35 -1.51 16 2 C -0.11 -1.92 3.26 -88.47 -0.29 -2.21 16 3 H 0.08 1.25 8.01 -51.93 -0.42 0.83 16 4 C 0.14 2.91 6.70 -2.53 -0.02 2.89 16 5 N -0.61 -15.78 3.39 -170.07 -0.58 -16.35 16 6 C -0.23 -6.54 10.27 -15.06 -0.15 -6.69 16 7 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 8 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 9 N -0.92 -27.80 10.36 55.49 0.57 -27.23 16 10 Si 0.91 22.54 29.56 -169.99 -5.02 17.52 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.17 4.36 5.13 -3.06 -0.02 4.35 16 15 C 0.12 2.41 2.74 -66.10 -0.18 2.23 16 16 H 0.09 1.81 7.52 -51.93 -0.39 1.42 16 17 N -0.71 -11.83 5.11 -53.10 -0.27 -12.10 16 18 C 0.59 10.52 7.81 -12.51 -0.10 10.43 16 19 O -0.55 -11.89 16.58 5.27 0.09 -11.81 16 20 C -0.28 -4.05 6.13 -105.06 -0.64 -4.69 16 21 C 0.08 0.99 11.50 -16.98 -0.20 0.80 16 22 N -0.30 -3.72 12.24 30.86 0.38 -3.34 16 23 N -0.36 -3.89 3.47 -60.81 -0.21 -4.10 16 24 C 0.14 1.00 5.54 -4.04 -0.02 0.98 16 25 C -0.10 -0.78 3.03 -89.50 -0.27 -1.05 16 26 C -0.12 -1.02 6.19 -25.07 -0.16 -1.18 16 27 C -0.13 -0.90 6.91 -24.74 -0.17 -1.07 16 28 C -0.12 -0.72 6.83 -25.07 -0.17 -0.89 16 29 C -0.12 -0.65 6.46 -25.62 -0.17 -0.82 16 30 C 0.12 1.50 11.25 -16.56 -0.19 1.32 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.02 0.43 7.99 -51.93 -0.41 0.01 16 36 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.05 1.44 7.18 -51.93 -0.37 1.07 16 38 H 0.05 1.33 7.61 -51.93 -0.40 0.93 16 39 H 0.39 5.38 7.50 -40.82 -0.31 5.07 16 40 H 0.19 1.79 7.50 -52.49 -0.39 1.39 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.53 7.92 -51.93 -0.41 0.11 16 43 H 0.09 0.81 8.03 -51.93 -0.42 0.39 16 44 H 0.07 0.58 7.76 -51.93 -0.40 0.18 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.07 0.29 7.67 -51.93 -0.40 -0.10 16 52 H 0.18 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 414.97 15.07 6.25 6.25 Total: -1.00 -35.23 414.97 -10.21 -45.45 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -8.94 Total: 3.14 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -2.49 Total: 2.57 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -0.11 Total: -63.13 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.23 -10.21 -45.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080680806.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.628 kcal (2) G-P(sol) polarization free energy of solvation -35.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds