Wall clock time and date at job start Wed Apr 1 2020 05:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46970 * 2 1 4 4 N 1.46491 * 109.46797 * 120.00049 * 2 1 3 5 5 N 1.39930 * 125.75667 * 300.01959 * 4 2 1 6 6 C 1.30447 * 108.90177 * 180.02562 * 5 4 2 7 7 C 1.41295 * 108.01951 * 0.02562 * 6 5 4 8 8 C 1.47433 * 126.41427 * 179.97438 * 7 6 5 9 9 O 1.21608 * 120.00035 * 185.39950 * 8 7 6 10 10 N 1.34775 * 119.99823 * 5.40377 * 8 7 6 11 11 C 1.46501 * 119.99823 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.88841 * 37.41624 * 11 10 8 13 13 C 1.54914 * 110.99886 * 273.54207 * 11 10 8 14 14 N 1.47426 * 104.83066 * 204.87670 * 13 11 10 15 15 C 1.36935 * 125.65205 * 204.09213 * 14 13 11 16 16 H 1.07998 * 120.00220 * 180.02562 * 15 14 13 17 17 C 1.38817 * 119.99612 * 0.02562 * 15 14 13 18 18 N 1.31612 * 120.00170 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99707 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46968 * 179.97438 * 19 17 15 21 21 H 1.48496 * 109.47708 * 300.00548 * 19 17 15 22 22 H 1.48506 * 109.47124 * 60.00516 * 19 17 15 23 23 C 1.47031 * 108.70309 * 24.35640 * 14 13 11 24 24 C 1.54330 * 107.26314 * 358.58737 * 23 14 13 25 25 H 1.08995 * 110.52172 * 96.45207 * 24 23 14 26 26 C 1.52996 * 111.00122 * 219.60077 * 24 23 14 27 27 C 1.34268 * 125.75229 * 120.32299 * 4 2 1 28 28 C 1.50694 * 126.29324 * 359.97438 * 27 4 2 29 29 C 1.53004 * 117.50217 * 312.46743 * 28 27 4 30 30 C 1.52994 * 117.50260 * 243.80511 * 28 27 4 31 31 H 1.08992 * 109.47383 * 300.00230 * 1 2 3 32 32 H 1.09004 * 109.47045 * 59.99814 * 1 2 3 33 33 H 1.08994 * 109.47459 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47020 * 240.00286 * 2 1 3 35 35 H 1.09007 * 109.47099 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47388 * 299.99976 * 3 2 1 37 37 H 1.08997 * 109.47584 * 60.00020 * 3 2 1 38 38 H 1.07999 * 125.99505 * 179.97438 * 6 5 4 39 39 H 0.97001 * 120.00495 * 359.97438 * 10 8 7 40 40 H 1.09004 * 110.36739 * 86.04233 * 13 11 10 41 41 H 1.08993 * 110.36982 * 323.71235 * 13 11 10 42 42 H 0.96998 * 120.00431 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.87803 * 118.12748 * 23 14 13 44 44 H 1.08993 * 109.88492 * 239.29339 * 23 14 13 45 45 H 1.08999 * 109.47587 * 173.78161 * 26 24 23 46 46 H 1.09000 * 109.47627 * 293.77883 * 26 24 23 47 47 H 1.09001 * 109.47385 * 53.78239 * 26 24 23 48 48 H 1.09003 * 115.54852 * 98.13419 * 28 27 4 49 49 H 1.08997 * 117.49582 * 359.97438 * 29 28 27 50 50 H 1.08996 * 117.50353 * 145.02004 * 29 28 27 51 51 H 1.09006 * 117.50247 * 214.98051 * 30 28 27 52 52 H 1.09000 * 117.49747 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1961 5 7 1.7551 -0.3192 2.5193 6 6 2.3501 -1.1595 3.3203 7 6 3.0268 -2.1140 2.5282 8 6 3.8306 -3.2479 3.0200 9 8 4.4452 -3.9435 2.2345 10 7 3.8840 -3.5135 4.3403 11 6 4.6831 -4.6399 4.8290 12 1 5.6039 -4.7413 4.2547 13 6 3.8642 -5.9547 4.8020 14 7 4.4921 -6.8114 5.8244 15 6 4.4433 -8.1794 5.8589 16 1 4.9378 -8.7175 6.6540 17 6 3.7582 -8.8745 4.8718 18 7 3.1560 -8.2188 3.9025 19 14 3.6923 -10.7408 4.9184 20 1 2.9050 -11.2373 3.7613 21 1 5.0715 -11.2868 4.8502 22 1 3.0472 -11.1819 6.1812 23 6 5.1740 -5.9533 6.8045 24 6 4.9857 -4.4925 6.3437 25 1 4.1439 -4.0338 6.8622 26 6 6.2627 -3.6792 6.5639 27 6 2.7984 -1.7833 1.2076 28 6 3.3255 -2.5157 0.0007 29 6 2.3328 -2.8426 -1.1167 30 6 2.8596 -3.9576 -0.2100 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 2.3298 -1.1304 4.3997 39 1 3.3939 -2.9585 4.9670 40 1 3.9320 -6.4237 3.8204 41 1 2.8233 -5.7586 5.0587 42 1 2.6776 -8.7045 3.2125 43 1 4.7313 -6.0930 7.7907 44 1 6.2360 -6.1966 6.8347 45 1 6.1403 -2.6863 6.1311 46 1 6.4559 -3.5881 7.6327 47 1 7.1019 -4.1834 6.0846 48 1 4.3468 -2.2693 -0.2897 49 1 1.2983 -2.5283 -0.9786 50 1 2.7010 -2.8117 -2.1421 51 1 3.5743 -4.6599 -0.6393 52 1 2.1721 -4.3768 0.5247 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080747001.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:11 Heat of formation + Delta-G solvation = 88.435941 kcal Electronic energy + Delta-G solvation = -31532.139573 eV Core-core repulsion = 27534.846326 eV Total energy + Delta-G solvation = -3997.293248 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.59283 -39.00688 -37.28457 -37.03042 -35.74039 -33.72874 -32.51214 -30.71495 -30.28860 -29.94442 -27.66495 -27.52995 -25.58034 -24.26642 -23.32924 -23.11713 -22.22349 -21.83991 -20.18289 -19.92827 -19.30673 -19.01706 -17.32778 -16.83224 -16.17348 -15.83298 -15.57229 -15.02463 -14.81980 -14.80634 -14.49928 -13.99183 -13.88862 -13.65795 -13.51428 -13.07498 -12.90342 -12.79300 -12.57200 -12.54676 -12.38589 -12.14326 -12.00413 -11.77811 -11.72202 -11.62804 -11.45652 -11.13760 -11.07510 -11.00389 -10.71488 -10.56053 -10.48986 -10.30351 -10.24801 -9.91723 -9.69117 -9.62325 -9.41555 -9.24023 -8.57863 -8.56822 -8.19890 -6.75237 -5.54896 -2.98757 1.59705 2.20025 2.29701 3.45946 3.49626 3.51512 3.65689 3.76103 3.93483 4.17635 4.30484 4.53840 4.56202 4.62916 4.73652 4.86322 4.92466 5.11403 5.16647 5.19445 5.27664 5.32846 5.36277 5.36987 5.39638 5.48260 5.50333 5.53434 5.60792 5.77008 5.80283 5.84026 5.89651 5.93343 6.04911 6.12529 6.14349 6.23870 6.24649 6.34813 6.44231 6.49176 6.60172 6.74322 6.83392 6.94990 7.10657 7.55682 7.61539 7.69489 7.98325 8.16053 8.48225 8.89140 9.29809 9.91052 10.54930 11.47183 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013221 B = 0.002997 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.347633 B = 9341.575259 C =10720.692605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 C -0.160 4.160 4 N -0.352 5.352 5 N -0.297 5.297 6 C 0.077 3.923 7 C -0.279 4.279 8 C 0.589 3.411 9 O -0.532 6.532 10 N -0.713 5.713 11 C 0.126 3.874 12 H 0.088 0.912 13 C 0.150 3.850 14 N -0.604 5.604 15 C -0.226 4.226 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.916 5.916 19 Si 0.913 3.087 20 H -0.290 1.290 21 H -0.285 1.285 22 H -0.286 1.286 23 C 0.142 3.858 24 C -0.112 4.112 25 H 0.072 0.928 26 C -0.137 4.137 27 C 0.181 3.819 28 C -0.098 4.098 29 C -0.193 4.193 30 C -0.120 4.120 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.187 0.813 39 H 0.390 0.610 40 H 0.113 0.887 41 H 0.011 0.989 42 H 0.252 0.748 43 H 0.022 0.978 44 H 0.026 0.974 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.128 0.872 49 H 0.091 0.909 50 H 0.101 0.899 51 H 0.106 0.894 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.681 20.256 -8.021 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.047 3.953 3 C -0.218 4.218 4 N -0.132 5.132 5 N -0.116 5.116 6 C -0.110 4.110 7 C -0.294 4.294 8 C 0.376 3.624 9 O -0.409 6.409 10 N -0.363 5.363 11 C 0.020 3.980 12 H 0.106 0.894 13 C 0.024 3.976 14 N -0.330 5.330 15 C -0.355 4.355 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.563 5.563 19 Si 0.744 3.256 20 H -0.216 1.216 21 H -0.212 1.212 22 H -0.213 1.213 23 C 0.015 3.985 24 C -0.131 4.131 25 H 0.091 0.909 26 C -0.194 4.194 27 C 0.049 3.951 28 C -0.118 4.118 29 C -0.230 4.230 30 C -0.157 4.157 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.204 0.796 39 H 0.223 0.777 40 H 0.130 0.870 41 H 0.029 0.971 42 H 0.063 0.937 43 H 0.040 0.960 44 H 0.044 0.956 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.145 0.855 49 H 0.110 0.890 50 H 0.120 0.880 51 H 0.124 0.876 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.127 20.696 -8.900 22.744 hybrid contribution 0.087 -1.310 0.685 1.481 sum -3.041 19.385 -8.215 21.272 Atomic orbital electron populations 1.22137 0.93157 1.03142 1.03497 1.21498 0.95712 0.94038 0.84057 1.22125 1.01864 0.94369 1.03435 1.48591 1.37874 1.20959 1.05763 1.77058 1.24384 1.23798 0.86337 1.23984 0.94902 0.92241 0.99913 1.20122 1.13468 1.03987 0.91800 1.17112 0.80404 0.82623 0.82293 1.90788 1.45062 1.50021 1.55059 1.45630 1.51230 1.32558 1.06851 1.22597 0.95426 0.87398 0.92541 0.89364 1.22226 0.91949 0.86157 0.97268 1.44405 1.61122 1.01710 1.25751 1.19001 1.28195 0.80081 1.08181 0.90512 1.24807 1.00088 0.98072 0.97563 1.69808 1.38774 1.33063 1.14701 0.86179 0.77487 0.85094 0.76862 1.21611 1.21164 1.21312 1.21329 0.96030 0.88009 0.93118 1.22415 0.97707 0.96957 0.96049 0.90944 1.21732 0.97434 0.99342 1.00913 1.20527 0.91701 0.87819 0.95030 1.20408 0.98947 0.99940 0.92458 1.23230 0.98433 1.05524 0.95776 1.22832 1.02402 0.89985 1.00522 0.90959 0.90605 0.91958 0.87347 0.92011 0.90652 0.91026 0.79623 0.77684 0.86962 0.97095 0.93719 0.96016 0.95575 0.93059 0.92999 0.92528 0.85481 0.89028 0.88012 0.87571 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.44 37.16 0.35 -0.87 16 2 C 0.15 1.26 3.14 -67.93 -0.21 1.05 16 3 C -0.16 -1.16 9.45 37.16 0.35 -0.81 16 4 N -0.35 -4.20 3.25 -50.17 -0.16 -4.37 16 5 N -0.30 -3.87 12.33 30.86 0.38 -3.49 16 6 C 0.08 0.99 11.50 -16.98 -0.20 0.79 16 7 C -0.28 -4.21 6.12 -105.06 -0.64 -4.86 16 8 C 0.59 10.55 7.81 -12.52 -0.10 10.45 16 9 O -0.53 -11.29 14.50 5.27 0.08 -11.22 16 10 N -0.71 -11.90 5.22 -52.79 -0.28 -12.18 16 11 C 0.13 2.49 2.76 -65.78 -0.18 2.31 16 12 H 0.09 1.93 7.64 -51.93 -0.40 1.53 16 13 C 0.15 3.79 5.58 -2.53 -0.01 3.77 16 14 N -0.60 -15.86 3.39 -170.06 -0.58 -16.44 16 15 C -0.23 -6.46 10.27 -15.06 -0.15 -6.61 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 18 N -0.92 -27.59 10.09 55.49 0.56 -27.03 16 19 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C 0.14 2.98 6.85 -3.06 -0.02 2.96 16 24 C -0.11 -1.91 3.15 -88.78 -0.28 -2.19 16 25 H 0.07 1.14 8.00 -51.93 -0.42 0.72 16 26 C -0.14 -1.91 9.17 37.16 0.34 -1.57 16 27 C 0.18 2.48 6.45 -81.60 -0.53 1.96 16 28 C -0.10 -1.22 4.84 -91.78 -0.44 -1.66 16 29 C -0.19 -1.89 8.52 -26.69 -0.23 -2.12 16 30 C -0.12 -1.62 9.05 -26.70 -0.24 -1.86 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.11 0.79 5.60 -51.93 -0.29 0.50 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.19 1.78 7.53 -52.49 -0.40 1.39 16 39 H 0.39 5.27 7.50 -40.82 -0.31 4.96 16 40 H 0.11 3.32 5.87 -51.93 -0.31 3.02 16 41 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.03 0.55 7.78 -51.93 -0.40 0.14 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 48 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 49 H 0.09 0.85 7.43 -51.93 -0.39 0.46 16 50 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 52 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 414.82 15.07 6.25 6.25 Total: -1.00 -34.28 414.82 -9.85 -44.13 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -8.78 Total: 6.41 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -2.29 Total: 0.37 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: -0.08 Total: -63.51 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.28 -9.85 -44.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080747001.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.563 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds