Wall clock time and date at job start Wed Apr 1 2020 05:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46970 * 2 1 4 4 N 1.46491 * 109.46797 * 120.00049 * 2 1 3 5 5 N 1.39930 * 125.75667 * 300.01959 * 4 2 1 6 6 C 1.30447 * 108.90177 * 180.02562 * 5 4 2 7 7 C 1.41295 * 108.01951 * 0.02562 * 6 5 4 8 8 C 1.47433 * 126.41427 * 179.97438 * 7 6 5 9 9 O 1.21608 * 120.00035 * 185.39950 * 8 7 6 10 10 N 1.34775 * 119.99823 * 5.40377 * 8 7 6 11 11 C 1.46501 * 119.99823 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.88841 * 37.41624 * 11 10 8 13 13 C 1.54914 * 110.99886 * 273.54207 * 11 10 8 14 14 N 1.47426 * 104.83066 * 204.87670 * 13 11 10 15 15 C 1.36935 * 125.65205 * 204.09213 * 14 13 11 16 16 H 1.07998 * 120.00220 * 180.02562 * 15 14 13 17 17 C 1.38817 * 119.99612 * 0.02562 * 15 14 13 18 18 N 1.31612 * 120.00170 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99707 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46968 * 179.97438 * 19 17 15 21 21 H 1.48496 * 109.47708 * 300.00548 * 19 17 15 22 22 H 1.48506 * 109.47124 * 60.00516 * 19 17 15 23 23 C 1.47031 * 108.70309 * 24.35640 * 14 13 11 24 24 C 1.54330 * 107.26314 * 358.58737 * 23 14 13 25 25 H 1.08995 * 110.52172 * 96.45207 * 24 23 14 26 26 C 1.52996 * 111.00122 * 219.60077 * 24 23 14 27 27 C 1.34268 * 125.75229 * 120.32299 * 4 2 1 28 28 C 1.50694 * 126.29324 * 359.97438 * 27 4 2 29 29 C 1.53004 * 117.50217 * 312.46743 * 28 27 4 30 30 C 1.52994 * 117.50260 * 243.80511 * 28 27 4 31 31 H 1.08992 * 109.47383 * 300.00230 * 1 2 3 32 32 H 1.09004 * 109.47045 * 59.99814 * 1 2 3 33 33 H 1.08994 * 109.47459 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47020 * 240.00286 * 2 1 3 35 35 H 1.09007 * 109.47099 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47388 * 299.99976 * 3 2 1 37 37 H 1.08997 * 109.47584 * 60.00020 * 3 2 1 38 38 H 1.07999 * 125.99505 * 179.97438 * 6 5 4 39 39 H 0.97001 * 120.00495 * 359.97438 * 10 8 7 40 40 H 1.09004 * 110.36739 * 86.04233 * 13 11 10 41 41 H 1.08993 * 110.36982 * 323.71235 * 13 11 10 42 42 H 0.96998 * 120.00431 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.87803 * 118.12748 * 23 14 13 44 44 H 1.08993 * 109.88492 * 239.29339 * 23 14 13 45 45 H 1.08999 * 109.47587 * 173.78161 * 26 24 23 46 46 H 1.09000 * 109.47627 * 293.77883 * 26 24 23 47 47 H 1.09001 * 109.47385 * 53.78239 * 26 24 23 48 48 H 1.09003 * 115.54852 * 98.13419 * 28 27 4 49 49 H 1.08997 * 117.49582 * 359.97438 * 29 28 27 50 50 H 1.08996 * 117.50353 * 145.02004 * 29 28 27 51 51 H 1.09006 * 117.50247 * 214.98051 * 30 28 27 52 52 H 1.09000 * 117.49747 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1961 5 7 1.7551 -0.3192 2.5193 6 6 2.3501 -1.1595 3.3203 7 6 3.0268 -2.1140 2.5282 8 6 3.8306 -3.2479 3.0200 9 8 4.4452 -3.9435 2.2345 10 7 3.8840 -3.5135 4.3403 11 6 4.6831 -4.6399 4.8290 12 1 5.6039 -4.7413 4.2547 13 6 3.8642 -5.9547 4.8020 14 7 4.4921 -6.8114 5.8244 15 6 4.4433 -8.1794 5.8589 16 1 4.9378 -8.7175 6.6540 17 6 3.7582 -8.8745 4.8718 18 7 3.1560 -8.2188 3.9025 19 14 3.6923 -10.7408 4.9184 20 1 2.9050 -11.2373 3.7613 21 1 5.0715 -11.2868 4.8502 22 1 3.0472 -11.1819 6.1812 23 6 5.1740 -5.9533 6.8045 24 6 4.9857 -4.4925 6.3437 25 1 4.1439 -4.0338 6.8622 26 6 6.2627 -3.6792 6.5639 27 6 2.7984 -1.7833 1.2076 28 6 3.3255 -2.5157 0.0007 29 6 2.3328 -2.8426 -1.1167 30 6 2.8596 -3.9576 -0.2100 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 2.3298 -1.1304 4.3997 39 1 3.3939 -2.9585 4.9670 40 1 3.9320 -6.4237 3.8204 41 1 2.8233 -5.7586 5.0587 42 1 2.6776 -8.7045 3.2125 43 1 4.7313 -6.0930 7.7907 44 1 6.2360 -6.1966 6.8347 45 1 6.1403 -2.6863 6.1311 46 1 6.4559 -3.5881 7.6327 47 1 7.1019 -4.1834 6.0846 48 1 4.3468 -2.2693 -0.2897 49 1 1.2983 -2.5283 -0.9786 50 1 2.7010 -2.8117 -2.1421 51 1 3.5743 -4.6599 -0.6393 52 1 2.1721 -4.3768 0.5247 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080747001.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:10 Heat of formation + Delta-G solvation = 66.629223 kcal Electronic energy + Delta-G solvation = -31533.085184 eV Core-core repulsion = 27534.846326 eV Total energy + Delta-G solvation = -3998.238858 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.61241 -40.52875 -38.88786 -38.03160 -36.51738 -35.53363 -34.19600 -32.14454 -31.65826 -31.09791 -29.24177 -28.23141 -27.36561 -25.68092 -24.66239 -24.11186 -23.18517 -23.06433 -21.90029 -21.44143 -20.42962 -20.17593 -18.88979 -18.41206 -17.28958 -17.26708 -16.93430 -16.55823 -15.99839 -15.70284 -15.62531 -15.47048 -15.27464 -15.15375 -14.51586 -14.35391 -14.32483 -14.15777 -13.90914 -13.74982 -13.34584 -13.18037 -13.10919 -13.07979 -12.96378 -12.79822 -12.58915 -12.55042 -12.46264 -12.35226 -12.24132 -11.99297 -11.93396 -11.79529 -11.62231 -11.46984 -11.34204 -11.22755 -10.73946 -10.70202 -10.35746 -9.94799 -9.53546 -8.87385 -7.73861 -5.21315 0.50642 1.20645 1.30838 1.44544 1.49059 1.55321 2.33214 2.52224 2.58652 2.71815 3.34146 3.34997 3.38147 3.70980 3.77738 3.85327 3.88781 3.92861 3.94831 4.06213 4.07622 4.16108 4.17967 4.25571 4.39253 4.56381 4.62406 4.66486 4.66890 4.70534 4.70870 4.79286 4.84859 4.87346 4.91788 4.97220 5.06501 5.07487 5.12458 5.15095 5.18307 5.22623 5.26529 5.38173 5.47008 5.48076 5.52979 5.74294 5.87264 5.91690 6.31971 6.54202 6.81092 7.09578 7.50462 7.79336 8.42266 9.25602 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013221 B = 0.002997 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.347633 B = 9341.575259 C =10720.692605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.136 3.864 3 C -0.154 4.154 4 N -0.343 5.343 5 N -0.306 5.306 6 C 0.082 3.918 7 C -0.308 4.308 8 C 0.586 3.414 9 O -0.575 6.575 10 N -0.701 5.701 11 C 0.144 3.856 12 H 0.065 0.935 13 C 0.160 3.840 14 N -0.627 5.627 15 C -0.242 4.242 16 H 0.085 0.915 17 C -0.070 4.070 18 N -0.946 5.946 19 Si 0.982 3.018 20 H -0.296 1.296 21 H -0.276 1.276 22 H -0.275 1.275 23 C 0.133 3.867 24 C -0.094 4.094 25 H 0.096 0.904 26 C -0.128 4.128 27 C 0.179 3.821 28 C -0.105 4.105 29 C -0.148 4.148 30 C -0.150 4.150 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.125 0.875 35 H 0.054 0.946 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.216 0.784 39 H 0.409 0.591 40 H 0.062 0.938 41 H -0.015 1.015 42 H 0.243 0.757 43 H 0.032 0.968 44 H 0.031 0.969 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.045 0.955 48 H 0.132 0.868 49 H 0.102 0.898 50 H 0.134 0.866 51 H 0.097 0.903 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.875 22.712 -7.927 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 C -0.212 4.212 4 N -0.122 5.122 5 N -0.125 5.125 6 C -0.105 4.105 7 C -0.323 4.323 8 C 0.374 3.626 9 O -0.455 6.455 10 N -0.352 5.352 11 C 0.038 3.962 12 H 0.083 0.917 13 C 0.033 3.967 14 N -0.354 5.354 15 C -0.371 4.371 16 H 0.103 0.897 17 C -0.263 4.263 18 N -0.595 5.595 19 Si 0.809 3.191 20 H -0.222 1.222 21 H -0.202 1.202 22 H -0.201 1.201 23 C 0.008 3.992 24 C -0.113 4.113 25 H 0.114 0.886 26 C -0.186 4.186 27 C 0.045 3.955 28 C -0.125 4.125 29 C -0.185 4.185 30 C -0.188 4.188 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.069 0.931 34 H 0.142 0.858 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.232 0.768 39 H 0.245 0.755 40 H 0.081 0.919 41 H 0.003 0.997 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.149 0.851 49 H 0.120 0.880 50 H 0.152 0.848 51 H 0.115 0.885 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.331 23.216 -8.760 25.037 hybrid contribution 0.123 -2.051 0.629 2.149 sum -3.208 21.165 -8.131 22.899 Atomic orbital electron populations 1.22127 0.92195 1.02698 1.04429 1.21953 0.96495 0.94790 0.83147 1.22103 1.01364 0.93383 1.04334 1.48936 1.36683 1.20209 1.06396 1.77035 1.24524 1.24000 0.86912 1.24394 0.93797 0.91086 1.01232 1.20002 1.14971 1.04187 0.93158 1.17586 0.79965 0.82881 0.82131 1.90762 1.46925 1.51699 1.56078 1.45414 1.51015 1.31687 1.07107 1.22061 0.93568 0.85932 0.94649 0.91692 1.21861 0.91576 0.88604 0.94657 1.44715 1.61521 1.01811 1.27320 1.19449 1.27730 0.81696 1.08186 0.89716 1.25724 1.00300 1.02832 0.97423 1.70136 1.39690 1.34419 1.15297 0.85108 0.77663 0.79467 0.76826 1.22188 1.20173 1.20074 1.21599 0.95619 0.89570 0.92423 1.22362 1.00518 0.95245 0.93183 0.88611 1.21680 0.94847 0.99290 1.02752 1.20720 0.91529 0.88234 0.95045 1.20463 1.00051 0.98534 0.93413 1.23343 0.98347 1.00570 0.96236 1.22648 1.02970 0.91047 1.02148 0.92222 0.87481 0.93050 0.85778 0.92726 0.87638 0.92218 0.76799 0.75493 0.91949 0.99732 0.94702 0.95026 0.95130 0.91197 0.90361 0.93577 0.85078 0.87971 0.84791 0.88496 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.44 71.98 0.68 -1.30 16 2 C 0.14 1.99 3.14 44.99 0.14 2.13 16 3 C -0.15 -1.82 9.45 71.98 0.68 -1.14 16 4 N -0.34 -7.79 3.25 -312.63 -1.02 -8.80 16 5 N -0.31 -7.61 12.33 -56.27 -0.69 -8.30 16 6 C 0.08 2.02 11.50 85.65 0.99 3.01 16 7 C -0.31 -9.42 6.12 -20.15 -0.12 -9.55 16 8 C 0.59 21.87 7.81 86.67 0.68 22.54 16 9 O -0.57 -26.10 14.50 -4.06 -0.06 -26.16 16 10 N -0.70 -23.78 5.22 -439.19 -2.29 -26.08 16 11 C 0.14 5.87 2.76 46.39 0.13 6.00 16 12 H 0.06 2.97 7.64 -2.39 -0.02 2.95 16 13 C 0.16 8.52 5.58 86.86 0.48 9.00 16 14 N -0.63 -33.98 3.39 -691.95 -2.35 -36.33 16 15 C -0.24 -14.16 10.27 84.04 0.86 -13.29 16 16 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 17 C -0.07 -4.20 5.49 84.86 0.47 -3.73 16 18 N -0.95 -60.28 10.09 21.65 0.22 -60.07 16 19 Si 0.98 47.72 29.55 68.60 2.03 49.74 16 20 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 23 C 0.13 5.53 6.85 86.73 0.59 6.13 16 24 C -0.09 -3.08 3.15 -9.60 -0.03 -3.11 16 25 H 0.10 2.74 8.00 -2.39 -0.02 2.72 16 26 C -0.13 -3.24 9.17 71.98 0.66 -2.58 16 27 C 0.18 4.88 6.45 42.14 0.27 5.15 16 28 C -0.10 -2.62 4.84 -11.54 -0.06 -2.67 16 29 C -0.15 -2.69 8.52 30.62 0.26 -2.43 16 30 C -0.15 -4.33 9.05 30.62 0.28 -4.05 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.12 1.42 5.60 -2.38 -0.01 1.41 16 35 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.22 3.67 7.53 -2.91 -0.02 3.65 16 39 H 0.41 10.64 7.50 -92.71 -0.70 9.94 16 40 H 0.06 3.99 5.87 -2.38 -0.01 3.97 16 41 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 42 H 0.24 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.03 1.25 7.78 -2.39 -0.02 1.23 16 45 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.05 1.27 8.08 -2.39 -0.02 1.25 16 48 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 49 H 0.10 1.67 7.43 -2.39 -0.02 1.65 16 50 H 0.13 1.62 8.14 -2.39 -0.02 1.61 16 51 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 52 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -81.19 414.82 3.01 -78.17 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.22 Total: 27.70 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 6.96 Total: 10.12 kcal Atomic # 7 Polarization: -133.44 SS G_CDS: -6.13 Total: -139.57 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.06 Total: -26.16 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.74 kcal Total: -81.19 3.01 -78.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080747001.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.802 kcal (2) G-P(sol) polarization free energy of solvation -81.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds