Wall clock time and date at job start Wed Apr 1 2020 04:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.99626 * 2 1 4 4 C 1.54323 * 109.88207 * 238.90395 * 2 1 3 5 5 H 1.08995 * 110.72104 * 336.74758 * 4 2 1 6 6 N 1.46502 * 110.87378 * 99.95435 * 4 2 1 7 7 C 1.34775 * 120.00107 * 200.06220 * 6 4 2 8 8 O 1.21568 * 119.99945 * 359.97438 * 7 6 4 9 9 C 1.47705 * 119.99869 * 180.02562 * 7 6 4 10 10 C 1.41505 * 126.51802 * 180.02562 * 9 7 6 11 11 C 1.35361 * 105.50412 * 179.97438 * 10 9 7 12 12 N 1.35035 * 107.23005 * 0.02562 * 11 10 9 13 13 C 1.46496 * 124.88609 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.47364 * 34.99334 * 13 12 11 15 15 C 1.52997 * 109.47126 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.46983 * 60.00376 * 15 14 13 17 17 C 1.52998 * 109.47098 * 299.99532 * 16 15 14 18 18 C 1.53001 * 109.46785 * 274.99685 * 13 12 11 19 19 N 1.28472 * 110.22904 * 359.71984 * 12 11 10 20 20 C 1.55159 * 102.94045 * 218.38980 * 4 2 1 21 21 C 1.54903 * 101.58460 * 35.50011 * 20 4 2 22 22 N 1.47024 * 109.88206 * 121.09282 * 2 1 3 23 23 C 1.36937 * 125.65056 * 298.62266 * 22 2 1 24 24 H 1.08002 * 119.99903 * 341.19389 * 23 22 2 25 25 C 1.38812 * 119.99917 * 161.18516 * 23 22 2 26 26 N 1.31620 * 119.99793 * 157.54413 * 25 23 22 27 27 Si 1.86799 * 120.00197 * 337.54912 * 25 23 22 28 28 H 1.48500 * 109.47046 * 84.53559 * 27 25 23 29 29 H 1.48499 * 109.47121 * 204.53520 * 27 25 23 30 30 H 1.48503 * 109.46914 * 324.53527 * 27 25 23 31 31 H 1.09004 * 109.47049 * 300.35488 * 1 2 3 32 32 H 1.08992 * 109.47398 * 60.35879 * 1 2 3 33 33 H 1.09007 * 109.46846 * 180.35991 * 1 2 3 34 34 H 0.97001 * 119.99625 * 20.06736 * 6 4 2 35 35 H 1.07996 * 127.24708 * 359.97438 * 10 9 7 36 36 H 1.08005 * 126.38614 * 180.02562 * 11 10 9 37 37 H 1.09000 * 109.47534 * 154.99622 * 13 12 11 38 38 H 1.09000 * 109.47030 * 300.00597 * 14 13 12 39 39 H 1.08998 * 109.46632 * 60.00007 * 14 13 12 40 40 H 1.09000 * 109.47574 * 300.00166 * 15 14 13 41 41 H 1.09004 * 109.46851 * 179.97438 * 15 14 13 42 42 H 1.09005 * 109.47029 * 180.02562 * 16 15 14 43 43 H 1.09000 * 109.47344 * 60.00034 * 16 15 14 44 44 H 1.09000 * 109.47433 * 300.00448 * 17 16 15 45 45 H 1.08995 * 109.47220 * 180.02562 * 17 16 15 46 46 H 1.08999 * 109.47262 * 299.99315 * 18 13 12 47 47 H 1.09000 * 109.47344 * 60.00204 * 18 13 12 48 48 H 1.09007 * 111.00627 * 277.42435 * 20 4 2 49 49 H 1.09004 * 111.03511 * 153.59445 * 20 4 2 50 50 H 1.09002 * 110.36954 * 204.15307 * 21 20 4 51 51 H 1.09004 * 110.36658 * 81.82598 * 21 20 4 52 52 H 0.96998 * 119.99831 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3052 -1.4460 -1.6182 6 7 2.4549 0.1930 -2.2905 7 6 2.5529 -0.2223 -3.5689 8 8 2.3098 -1.3792 -3.8525 9 6 2.9568 0.7279 -4.6251 10 6 3.1026 0.4427 -6.0035 11 6 3.4836 1.6087 -6.5759 12 7 3.5596 2.5310 -5.5925 13 6 3.9394 3.9326 -5.7859 14 6 3.4106 4.4228 -7.1354 15 6 3.8079 5.8865 -7.3375 16 6 5.3327 6.0092 -7.3122 17 6 5.8615 5.5190 -5.9628 18 6 5.4642 4.0559 -5.7604 19 7 3.2447 2.0040 -4.4640 20 6 3.2876 -1.5142 -0.6923 21 6 2.8146 -1.8794 0.7368 22 7 2.0300 -0.7140 1.1840 23 6 1.8002 -0.3588 2.4863 24 1 1.4813 0.6453 2.7240 25 6 1.9769 -1.2894 3.5011 26 7 2.1949 -0.8847 4.7344 27 14 1.9053 -3.1159 3.1162 28 1 3.2364 -3.5748 2.6442 29 1 1.5292 -3.8656 4.3417 30 1 0.8935 -3.3593 2.0569 31 1 -0.3633 0.5194 0.8868 32 1 -0.3634 0.5082 -0.8931 33 1 -0.3633 -1.0277 0.0065 34 1 2.6493 1.1160 -2.0641 35 1 2.9433 -0.5055 -6.4952 36 1 3.6886 1.7711 -7.6238 37 1 3.5124 4.5384 -4.9866 38 1 3.8375 3.8171 -7.9346 39 1 2.3243 4.3349 -7.1535 40 1 3.3813 6.4925 -6.5383 41 1 3.4315 6.2355 -8.2991 42 1 5.6157 7.0520 -7.4558 43 1 5.7593 5.4032 -8.1115 44 1 5.4349 6.1250 -5.1635 45 1 6.9478 5.6068 -5.9446 46 1 5.8409 3.7067 -4.7990 47 1 5.8911 3.4502 -6.5597 48 1 4.1655 -0.8688 -0.6604 49 1 3.4858 -2.4110 -1.2794 50 1 3.6717 -2.0337 1.3923 51 1 2.1886 -2.7714 0.7129 52 1 2.3188 -1.5350 5.4434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088566400.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:21 Heat of formation + Delta-G solvation = 55.139379 kcal Electronic energy + Delta-G solvation = -30590.371379 eV Core-core repulsion = 26591.634284 eV Total energy + Delta-G solvation = -3998.737095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.90457 -39.60896 -38.89665 -37.66597 -34.07442 -33.50363 -32.07126 -31.57344 -30.84920 -30.64069 -29.82708 -28.88972 -25.38709 -24.10369 -23.81008 -23.41371 -22.59613 -21.54293 -20.94810 -20.13439 -19.95420 -19.40714 -18.02250 -16.83519 -16.80510 -16.21391 -15.97383 -15.66675 -14.99216 -14.87121 -14.82849 -14.45095 -14.36968 -14.04931 -13.81871 -13.45369 -13.38447 -13.15913 -13.01458 -12.89736 -12.86017 -12.68596 -12.07521 -11.94969 -11.82346 -11.78194 -11.52101 -11.28213 -11.13833 -11.10171 -11.04642 -10.86674 -10.82316 -10.71922 -10.37930 -10.13801 -9.93391 -9.86412 -9.41540 -9.39053 -9.20141 -8.73891 -8.59421 -7.03428 -5.90902 -3.21330 1.53054 2.01555 2.14212 3.32852 3.40511 3.52133 3.53729 3.56698 3.81213 4.01012 4.21854 4.31683 4.44704 4.53101 4.56658 4.59706 4.70908 4.74532 4.79056 4.92441 4.96259 5.10186 5.19943 5.25673 5.31011 5.31879 5.37722 5.39147 5.43117 5.44890 5.54170 5.57564 5.62882 5.63677 5.68961 5.76085 5.93309 6.02163 6.11374 6.23740 6.26832 6.38215 6.48555 6.53908 6.58172 6.68872 6.80475 6.87377 7.04806 7.60399 7.74671 7.88214 8.34445 8.39325 8.86602 9.72600 10.20784 11.25051 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.002187 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.671254 B =12801.137743 C =13528.286600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.047 0.953 4 C 0.135 3.865 5 H 0.096 0.904 6 N -0.702 5.702 7 C 0.603 3.397 8 O -0.536 6.536 9 C -0.014 4.014 10 C -0.179 4.179 11 C -0.021 4.021 12 N -0.277 5.277 13 C 0.149 3.851 14 C -0.129 4.129 15 C -0.115 4.115 16 C -0.125 4.125 17 C -0.117 4.117 18 C -0.130 4.130 19 N -0.259 5.259 20 C -0.140 4.140 21 C 0.112 3.888 22 N -0.601 5.601 23 C -0.236 4.236 24 H 0.092 0.908 25 C 0.022 3.978 26 N -0.909 5.909 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.303 1.303 30 H -0.276 1.276 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.405 0.595 35 H 0.161 0.839 36 H 0.178 0.822 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.028 0.972 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.914 14.274 -29.184 33.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.065 0.935 4 C 0.030 3.970 5 H 0.114 0.886 6 N -0.353 5.353 7 C 0.387 3.613 8 O -0.411 6.411 9 C -0.174 4.174 10 C -0.207 4.207 11 C -0.164 4.164 12 N -0.065 5.065 13 C 0.049 3.951 14 C -0.167 4.167 15 C -0.153 4.153 16 C -0.162 4.162 17 C -0.155 4.155 18 C -0.168 4.168 19 N -0.094 5.094 20 C -0.180 4.180 21 C -0.014 4.014 22 N -0.327 5.327 23 C -0.363 4.363 24 H 0.110 0.890 25 C -0.177 4.177 26 N -0.553 5.553 27 Si 0.711 3.289 28 H -0.212 1.212 29 H -0.231 1.231 30 H -0.201 1.201 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.241 0.759 35 H 0.178 0.822 36 H 0.195 0.805 37 H 0.128 0.872 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.089 0.911 50 H 0.080 0.920 51 H 0.045 0.955 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.839 14.368 -28.285 32.258 hybrid contribution -0.048 -1.318 -0.606 1.451 sum 5.790 13.050 -28.891 32.226 Atomic orbital electron populations 1.22205 0.97155 1.01544 1.00578 1.21074 0.92870 0.95307 0.85903 0.93523 1.22148 0.97069 0.91074 0.86689 0.88563 1.45880 1.68485 1.14419 1.06468 1.16876 0.77104 0.86007 0.81291 1.90783 1.50521 1.17659 1.82176 1.22012 1.09082 0.91157 0.95141 1.21767 1.06964 0.99346 0.92639 1.22726 1.07929 0.89346 0.96368 1.45701 1.46922 1.09934 1.03958 1.21652 0.96562 0.76631 1.00268 1.21928 1.01853 0.97697 0.95228 1.21502 0.96284 0.94774 1.02775 1.21618 0.95341 1.01687 0.97573 1.21505 1.01450 0.94642 0.97865 1.21957 0.93030 0.98219 1.03628 1.73529 1.16577 1.09818 1.09524 1.23138 0.97630 1.00205 0.96980 1.21959 0.95218 0.91076 0.93114 1.44835 1.57474 1.28956 1.01452 1.18579 1.42351 0.96715 0.78659 0.88997 1.24989 1.00184 0.97664 0.94826 1.69837 1.50983 1.33878 1.00573 0.87006 0.78306 0.87436 0.76119 1.21182 1.23119 1.20146 0.91961 0.94020 0.93014 0.75911 0.82160 0.80527 0.87244 0.90601 0.90557 0.91225 0.90845 0.91323 0.91640 0.91231 0.90929 0.90544 0.90974 0.90936 0.91108 0.91953 0.95479 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.14 37.16 0.34 -2.59 16 2 C 0.16 3.10 3.48 -66.95 -0.23 2.87 16 3 H 0.05 0.91 7.70 -51.93 -0.40 0.51 16 4 C 0.13 2.44 2.75 -66.09 -0.18 2.25 16 5 H 0.10 1.82 7.40 -51.93 -0.38 1.44 16 6 N -0.70 -11.09 5.20 -53.02 -0.28 -11.37 16 7 C 0.60 9.89 7.82 -12.39 -0.10 9.79 16 8 O -0.54 -10.27 16.65 5.31 0.09 -10.18 16 9 C -0.01 -0.19 7.13 -82.77 -0.59 -0.78 16 10 C -0.18 -2.08 10.81 -39.36 -0.43 -2.50 16 11 C -0.02 -0.19 10.54 -17.17 -0.18 -0.37 16 12 N -0.28 -2.63 3.22 -54.83 -0.18 -2.81 16 13 C 0.15 0.95 3.07 -67.93 -0.21 0.74 16 14 C -0.13 -0.54 4.82 -26.73 -0.13 -0.67 16 15 C -0.12 -0.36 5.92 -26.73 -0.16 -0.52 16 16 C -0.12 -0.39 5.92 -26.73 -0.16 -0.55 16 17 C -0.12 -0.47 5.92 -26.75 -0.16 -0.62 16 18 C -0.13 -0.73 5.52 -26.75 -0.15 -0.87 16 19 N -0.26 -3.27 11.67 33.42 0.39 -2.88 16 20 C -0.14 -2.63 6.77 -24.58 -0.17 -2.80 16 21 C 0.11 2.52 4.69 -2.53 -0.01 2.51 16 22 N -0.60 -14.58 2.94 -162.57 -0.48 -15.06 16 23 C -0.24 -6.66 10.16 -15.06 -0.15 -6.81 16 24 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 25 C 0.02 0.64 5.43 -17.43 -0.09 0.55 16 26 N -0.91 -28.18 13.97 55.49 0.78 -27.40 16 27 Si 0.88 23.03 24.27 -169.99 -4.13 18.91 16 28 H -0.28 -7.20 6.49 56.52 0.37 -6.83 16 29 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 30 H -0.28 -7.15 6.66 56.52 0.38 -6.78 16 31 H 0.06 1.24 8.02 -51.93 -0.42 0.82 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.41 5.84 8.05 -40.82 -0.33 5.51 16 35 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.18 0.88 7.16 -52.48 -0.38 0.50 16 37 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.26 7.05 -51.93 -0.37 -0.11 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 49 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 50 H 0.06 1.49 6.67 -51.93 -0.35 1.14 16 51 H 0.03 0.64 5.56 -51.93 -0.29 0.35 16 52 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 404.11 15.07 6.09 6.09 Total: -1.00 -34.06 404.11 -9.33 -43.40 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -8.87 Total: 1.68 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.76 Total: -0.37 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.23 Total: -59.52 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.13 Total: 18.91 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.06 -9.33 -43.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088566400.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.536 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds