Wall clock time and date at job start Wed Apr 1 2020 04:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.99626 * 2 1 4 4 C 1.54323 * 109.88207 * 238.90395 * 2 1 3 5 5 H 1.08995 * 110.72104 * 336.74758 * 4 2 1 6 6 N 1.46502 * 110.87378 * 99.95435 * 4 2 1 7 7 C 1.34775 * 120.00107 * 200.06220 * 6 4 2 8 8 O 1.21568 * 119.99945 * 359.97438 * 7 6 4 9 9 C 1.47705 * 119.99869 * 180.02562 * 7 6 4 10 10 C 1.41505 * 126.51802 * 180.02562 * 9 7 6 11 11 C 1.35361 * 105.50412 * 179.97438 * 10 9 7 12 12 N 1.35035 * 107.23005 * 0.02562 * 11 10 9 13 13 C 1.46496 * 124.88609 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.47364 * 34.99334 * 13 12 11 15 15 C 1.52997 * 109.47126 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.46983 * 60.00376 * 15 14 13 17 17 C 1.52998 * 109.47098 * 299.99532 * 16 15 14 18 18 C 1.53001 * 109.46785 * 274.99685 * 13 12 11 19 19 N 1.28472 * 110.22904 * 359.71984 * 12 11 10 20 20 C 1.55159 * 102.94045 * 218.38980 * 4 2 1 21 21 C 1.54903 * 101.58460 * 35.50011 * 20 4 2 22 22 N 1.47024 * 109.88206 * 121.09282 * 2 1 3 23 23 C 1.36937 * 125.65056 * 298.62266 * 22 2 1 24 24 H 1.08002 * 119.99903 * 341.19389 * 23 22 2 25 25 C 1.38812 * 119.99917 * 161.18516 * 23 22 2 26 26 N 1.31620 * 119.99793 * 157.54413 * 25 23 22 27 27 Si 1.86799 * 120.00197 * 337.54912 * 25 23 22 28 28 H 1.48500 * 109.47046 * 84.53559 * 27 25 23 29 29 H 1.48499 * 109.47121 * 204.53520 * 27 25 23 30 30 H 1.48503 * 109.46914 * 324.53527 * 27 25 23 31 31 H 1.09004 * 109.47049 * 300.35488 * 1 2 3 32 32 H 1.08992 * 109.47398 * 60.35879 * 1 2 3 33 33 H 1.09007 * 109.46846 * 180.35991 * 1 2 3 34 34 H 0.97001 * 119.99625 * 20.06736 * 6 4 2 35 35 H 1.07996 * 127.24708 * 359.97438 * 10 9 7 36 36 H 1.08005 * 126.38614 * 180.02562 * 11 10 9 37 37 H 1.09000 * 109.47534 * 154.99622 * 13 12 11 38 38 H 1.09000 * 109.47030 * 300.00597 * 14 13 12 39 39 H 1.08998 * 109.46632 * 60.00007 * 14 13 12 40 40 H 1.09000 * 109.47574 * 300.00166 * 15 14 13 41 41 H 1.09004 * 109.46851 * 179.97438 * 15 14 13 42 42 H 1.09005 * 109.47029 * 180.02562 * 16 15 14 43 43 H 1.09000 * 109.47344 * 60.00034 * 16 15 14 44 44 H 1.09000 * 109.47433 * 300.00448 * 17 16 15 45 45 H 1.08995 * 109.47220 * 180.02562 * 17 16 15 46 46 H 1.08999 * 109.47262 * 299.99315 * 18 13 12 47 47 H 1.09000 * 109.47344 * 60.00204 * 18 13 12 48 48 H 1.09007 * 111.00627 * 277.42435 * 20 4 2 49 49 H 1.09004 * 111.03511 * 153.59445 * 20 4 2 50 50 H 1.09002 * 110.36954 * 204.15307 * 21 20 4 51 51 H 1.09004 * 110.36658 * 81.82598 * 21 20 4 52 52 H 0.96998 * 119.99831 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3052 -1.4460 -1.6182 6 7 2.4549 0.1930 -2.2905 7 6 2.5529 -0.2223 -3.5689 8 8 2.3098 -1.3792 -3.8525 9 6 2.9568 0.7279 -4.6251 10 6 3.1026 0.4427 -6.0035 11 6 3.4836 1.6087 -6.5759 12 7 3.5596 2.5310 -5.5925 13 6 3.9394 3.9326 -5.7859 14 6 3.4106 4.4228 -7.1354 15 6 3.8079 5.8865 -7.3375 16 6 5.3327 6.0092 -7.3122 17 6 5.8615 5.5190 -5.9628 18 6 5.4642 4.0559 -5.7604 19 7 3.2447 2.0040 -4.4640 20 6 3.2876 -1.5142 -0.6923 21 6 2.8146 -1.8794 0.7368 22 7 2.0300 -0.7140 1.1840 23 6 1.8002 -0.3588 2.4863 24 1 1.4813 0.6453 2.7240 25 6 1.9769 -1.2894 3.5011 26 7 2.1949 -0.8847 4.7344 27 14 1.9053 -3.1159 3.1162 28 1 3.2364 -3.5748 2.6442 29 1 1.5292 -3.8656 4.3417 30 1 0.8935 -3.3593 2.0569 31 1 -0.3633 0.5194 0.8868 32 1 -0.3634 0.5082 -0.8931 33 1 -0.3633 -1.0277 0.0065 34 1 2.6493 1.1160 -2.0641 35 1 2.9433 -0.5055 -6.4952 36 1 3.6886 1.7711 -7.6238 37 1 3.5124 4.5384 -4.9866 38 1 3.8375 3.8171 -7.9346 39 1 2.3243 4.3349 -7.1535 40 1 3.3813 6.4925 -6.5383 41 1 3.4315 6.2355 -8.2991 42 1 5.6157 7.0520 -7.4558 43 1 5.7593 5.4032 -8.1115 44 1 5.4349 6.1250 -5.1635 45 1 6.9478 5.6068 -5.9446 46 1 5.8409 3.7067 -4.7990 47 1 5.8911 3.4502 -6.5597 48 1 4.1655 -0.8688 -0.6604 49 1 3.4858 -2.4110 -1.2794 50 1 3.6717 -2.0337 1.3923 51 1 2.1886 -2.7714 0.7129 52 1 2.3188 -1.5350 5.4434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088566400.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:20 Heat of formation + Delta-G solvation = 33.167944 kcal Electronic energy + Delta-G solvation = -30591.324132 eV Core-core repulsion = 26591.634284 eV Total energy + Delta-G solvation = -3999.689848 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.71840 -40.96494 -39.50404 -39.11135 -35.66677 -34.28915 -33.91051 -32.28457 -32.04039 -31.60773 -31.20727 -29.94453 -26.81311 -25.88094 -24.95222 -23.89950 -23.41514 -22.58576 -22.10109 -21.49858 -20.77844 -20.44661 -18.88029 -18.83153 -17.82576 -17.50012 -16.98444 -16.94743 -16.19724 -16.06737 -15.73223 -15.43221 -15.22949 -15.12333 -15.05027 -14.62226 -14.55209 -14.45491 -14.03974 -13.99211 -13.88352 -13.51958 -13.40847 -13.24338 -13.21715 -12.93160 -12.61521 -12.47919 -12.35134 -12.13301 -12.12445 -12.05560 -11.92825 -11.64387 -11.57872 -11.49440 -11.40356 -11.24762 -11.19268 -10.81397 -10.30067 -10.11920 -9.92837 -9.09363 -8.17103 -5.43729 0.52742 1.20537 1.30863 1.39212 1.44516 1.47368 2.07529 2.36552 2.41710 3.03072 3.22907 3.31456 3.58613 3.61972 3.66079 3.73665 3.85224 3.91587 4.04515 4.09615 4.18784 4.25575 4.28573 4.30405 4.40062 4.43883 4.47117 4.51110 4.62077 4.69619 4.72686 4.78116 4.78901 4.86415 4.90325 4.97044 4.98793 5.03430 5.05754 5.13233 5.15674 5.16571 5.30974 5.32860 5.33881 5.37665 5.50130 5.51973 5.68732 5.89772 6.11279 6.42453 6.74006 6.92041 7.15008 7.53253 8.09110 9.02412 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.002187 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.671254 B =12801.137743 C =13528.286600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.152 3.848 3 H 0.054 0.946 4 C 0.150 3.850 5 H 0.092 0.908 6 N -0.695 5.695 7 C 0.605 3.395 8 O -0.568 6.568 9 C -0.043 4.043 10 C -0.198 4.198 11 C 0.001 3.999 12 N -0.269 5.269 13 C 0.143 3.857 14 C -0.122 4.122 15 C -0.113 4.113 16 C -0.122 4.122 17 C -0.114 4.114 18 C -0.125 4.125 19 N -0.276 5.276 20 C -0.128 4.128 21 C 0.106 3.894 22 N -0.616 5.616 23 C -0.221 4.221 24 H 0.066 0.934 25 C -0.034 4.034 26 N -0.954 5.954 27 Si 0.937 3.063 28 H -0.272 1.272 29 H -0.308 1.308 30 H -0.272 1.272 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.413 0.587 35 H 0.165 0.835 36 H 0.220 0.780 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.047 0.953 51 H 0.024 0.976 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.520 15.155 -33.038 36.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.046 3.954 3 H 0.072 0.928 4 C 0.044 3.956 5 H 0.110 0.890 6 N -0.346 5.346 7 C 0.391 3.609 8 O -0.446 6.446 9 C -0.202 4.202 10 C -0.227 4.227 11 C -0.142 4.142 12 N -0.058 5.058 13 C 0.044 3.956 14 C -0.161 4.161 15 C -0.151 4.151 16 C -0.159 4.159 17 C -0.152 4.152 18 C -0.163 4.163 19 N -0.112 5.112 20 C -0.167 4.167 21 C -0.019 4.019 22 N -0.343 5.343 23 C -0.350 4.350 24 H 0.084 0.916 25 C -0.229 4.229 26 N -0.601 5.601 27 Si 0.767 3.233 28 H -0.198 1.198 29 H -0.237 1.237 30 H -0.198 1.198 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.250 0.750 35 H 0.182 0.818 36 H 0.237 0.763 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.103 0.897 50 H 0.066 0.934 51 H 0.042 0.958 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.450 15.275 -32.183 36.203 hybrid contribution -0.199 -1.400 0.490 1.497 sum 6.251 13.875 -31.693 35.157 Atomic orbital electron populations 1.22107 0.96083 1.01218 1.01310 1.21222 0.93695 0.95342 0.85149 0.92811 1.21822 0.96491 0.90947 0.86342 0.89002 1.45721 1.68440 1.14345 1.06046 1.17180 0.76178 0.86024 0.81525 1.90755 1.52013 1.19122 1.82679 1.21767 1.11438 0.91551 0.95421 1.21978 1.08074 1.00766 0.91838 1.23287 1.05270 0.87862 0.97777 1.46094 1.45244 1.11030 1.03401 1.21971 0.97142 0.74919 1.01600 1.21933 1.01630 0.98529 0.93983 1.21504 0.96293 0.93944 1.03338 1.21607 0.95241 1.02176 0.96894 1.21499 1.01703 0.93435 0.98588 1.21912 0.92299 0.99391 1.02708 1.73470 1.17195 1.09388 1.11192 1.23048 0.98037 1.01054 0.94583 1.22004 0.94402 0.90418 0.95033 1.44895 1.58319 1.29767 1.01285 1.18497 1.40265 0.95598 0.80594 0.91633 1.25546 1.01194 1.01343 0.94786 1.69947 1.53558 1.34975 1.01589 0.86082 0.78842 0.82821 0.75590 1.19781 1.23656 1.19771 0.93536 0.90964 0.93810 0.75029 0.81774 0.76303 0.87903 0.89033 0.90861 0.91539 0.89617 0.90681 0.90977 0.91545 0.90603 0.92656 0.90298 0.90210 0.89710 0.93445 0.95813 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.46 9.14 71.98 0.66 -4.80 16 2 C 0.15 5.95 3.48 45.34 0.16 6.11 16 3 H 0.05 2.05 7.70 -2.39 -0.02 2.03 16 4 C 0.15 5.22 2.75 46.18 0.13 5.34 16 5 H 0.09 3.36 7.40 -2.39 -0.02 3.34 16 6 N -0.69 -21.19 5.20 -439.92 -2.29 -23.48 16 7 C 0.60 19.34 7.82 86.75 0.68 20.02 16 8 O -0.57 -21.40 16.65 -3.93 -0.07 -21.46 16 9 C -0.04 -1.17 7.13 42.46 0.30 -0.87 16 10 C -0.20 -4.25 10.81 22.41 0.24 -4.01 16 11 C 0.00 0.01 10.54 83.54 0.88 0.89 16 12 N -0.27 -4.52 3.22 -327.38 -1.05 -5.58 16 13 C 0.14 1.50 3.07 44.99 0.14 1.64 16 14 C -0.12 -0.62 4.82 30.59 0.15 -0.48 16 15 C -0.11 -0.36 5.92 30.59 0.18 -0.18 16 16 C -0.12 -0.40 5.92 30.59 0.18 -0.21 16 17 C -0.11 -0.68 5.92 30.58 0.18 -0.50 16 18 C -0.12 -1.15 5.52 30.58 0.17 -0.98 16 19 N -0.28 -6.60 11.67 -48.18 -0.56 -7.17 16 20 C -0.13 -4.64 6.77 31.98 0.22 -4.42 16 21 C 0.11 4.73 4.69 86.85 0.41 5.14 16 22 N -0.62 -29.88 2.94 -668.25 -1.96 -31.84 16 23 C -0.22 -12.72 10.16 84.03 0.85 -11.86 16 24 H 0.07 4.04 8.06 -2.91 -0.02 4.02 16 25 C -0.03 -2.04 5.43 84.86 0.46 -1.58 16 26 N -0.95 -60.75 13.97 21.65 0.30 -60.45 16 27 Si 0.94 48.21 24.27 68.60 1.66 49.88 16 28 H -0.27 -13.26 6.49 99.48 0.65 -12.61 16 29 H -0.31 -15.98 7.11 99.48 0.71 -15.27 16 30 H -0.27 -13.69 6.66 99.48 0.66 -13.02 16 31 H 0.05 1.84 8.02 -2.39 -0.02 1.82 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.04 1.66 8.14 -2.38 -0.02 1.65 16 34 H 0.41 11.46 8.05 -92.71 -0.75 10.71 16 35 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.22 1.10 7.16 -2.91 -0.02 1.08 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 0.21 7.05 -2.39 -0.02 0.19 16 39 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.07 0.27 8.14 -2.39 -0.02 0.26 16 41 H 0.09 0.13 8.14 -2.38 -0.02 0.11 16 42 H 0.07 0.19 8.14 -2.38 -0.02 0.17 16 43 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 49 H 0.08 2.87 8.14 -2.38 -0.02 2.86 16 50 H 0.05 2.24 6.67 -2.39 -0.02 2.22 16 51 H 0.02 1.10 5.56 -2.38 -0.01 1.09 16 52 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -75.01 404.11 2.07 -72.93 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.06 Total: 17.92 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 5.98 Total: 9.25 kcal Atomic # 7 Polarization: -122.95 SS G_CDS: -5.57 Total: -128.52 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.07 Total: -21.46 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 1.66 Total: 49.88 kcal Total: -75.01 2.07 -72.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088566400.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.100 kcal (2) G-P(sol) polarization free energy of solvation -75.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds