Wall clock time and date at job start Wed Apr 1 2020 04:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.87195 * 2 1 4 4 C 1.54328 * 109.87848 * 238.82680 * 2 1 3 5 5 H 1.09001 * 110.72067 * 336.74921 * 4 2 1 6 6 N 1.46503 * 110.72149 * 100.02625 * 4 2 1 7 7 C 1.34769 * 119.99872 * 204.99931 * 6 4 2 8 8 O 1.21577 * 120.00423 * 0.02562 * 7 6 4 9 9 C 1.47709 * 119.99974 * 179.97438 * 7 6 4 10 10 C 1.41505 * 126.51844 * 179.71300 * 9 7 6 11 11 C 1.35363 * 105.50325 * 179.84288 * 10 9 7 12 12 C 1.50698 * 126.38886 * 180.14305 * 11 10 9 13 13 C 1.53001 * 109.47080 * 265.30141 * 12 11 10 14 14 C 1.52999 * 109.47524 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47290 * 59.99681 * 14 13 12 16 16 C 1.53001 * 109.47097 * 300.00580 * 15 14 13 17 17 C 1.52997 * 109.47600 * 145.29904 * 12 11 10 18 18 N 1.35040 * 107.22560 * 0.41315 * 11 10 9 19 19 H 0.97001 * 124.87940 * 179.72234 * 18 11 10 20 20 N 1.28462 * 110.23458 * 359.72630 * 18 11 10 21 21 C 1.55161 * 102.94007 * 218.38605 * 4 2 1 22 22 C 1.54911 * 101.58121 * 35.50246 * 21 4 2 23 23 N 1.47019 * 109.88443 * 121.01780 * 2 1 3 24 24 C 1.36939 * 125.65017 * 298.31534 * 23 2 1 25 25 H 1.07999 * 119.99598 * 341.50761 * 24 23 2 26 26 C 1.38807 * 120.00201 * 161.49470 * 24 23 2 27 27 N 1.31619 * 120.00244 * 157.62938 * 26 24 23 28 28 Si 1.86806 * 119.99966 * 337.62860 * 26 24 23 29 29 H 1.48497 * 109.47000 * 84.53743 * 28 26 24 30 30 H 1.48500 * 109.47414 * 204.54010 * 28 26 24 31 31 H 1.48499 * 109.47120 * 324.53683 * 28 26 24 32 32 H 1.09006 * 109.46791 * 300.43483 * 1 2 3 33 33 H 1.09002 * 109.47241 * 180.44268 * 1 2 3 34 34 H 1.08997 * 109.47535 * 60.43256 * 1 2 3 35 35 H 0.96998 * 119.99549 * 24.99645 * 6 4 2 36 36 H 1.08004 * 127.24556 * 359.97438 * 10 9 7 37 37 H 1.09008 * 109.46988 * 25.29376 * 12 11 10 38 38 H 1.09006 * 109.46779 * 299.99985 * 13 12 11 39 39 H 1.09000 * 109.47117 * 59.99157 * 13 12 11 40 40 H 1.09000 * 109.46564 * 299.99540 * 14 13 12 41 41 H 1.08998 * 109.47083 * 179.97438 * 14 13 12 42 42 H 1.08993 * 109.47475 * 180.02562 * 15 14 13 43 43 H 1.09000 * 109.46994 * 59.99545 * 15 14 13 44 44 H 1.08997 * 109.47019 * 299.99678 * 16 15 14 45 45 H 1.09001 * 109.47174 * 179.97438 * 16 15 14 46 46 H 1.08997 * 109.46823 * 300.00422 * 17 12 11 47 47 H 1.08997 * 109.46923 * 59.99964 * 17 12 11 48 48 H 1.08996 * 111.00629 * 277.42635 * 21 4 2 49 49 H 1.08998 * 111.03539 * 153.59027 * 21 4 2 50 50 H 1.08999 * 110.37163 * 204.14908 * 22 21 4 51 51 H 1.09003 * 110.36773 * 81.82763 * 22 21 4 52 52 H 0.96996 * 120.00123 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0547 -0.7512 -1.2418 5 1 1.3050 -1.4482 -1.6163 6 7 2.4553 0.1929 -2.2879 7 6 2.4580 -0.1933 -3.5791 8 8 2.1274 -1.3250 -3.8758 9 6 2.8613 0.7588 -4.6339 10 6 2.9199 0.5004 -6.0239 11 6 3.3347 1.6579 -6.5900 12 6 3.5548 1.9056 -8.0601 13 6 5.0286 1.6759 -8.4009 14 6 5.2520 1.9268 -9.8936 15 6 4.8693 3.3691 -10.2312 16 6 3.3956 3.5988 -9.8904 17 6 3.1723 3.3481 -8.3972 18 7 3.5203 2.5475 -5.5911 19 1 3.8216 3.4617 -5.7113 20 7 3.2405 2.0090 -4.4588 21 6 3.2876 -1.5152 -0.6904 22 6 2.8146 -1.8784 0.7393 23 7 2.0300 -0.7124 1.1848 24 6 1.8051 -0.3522 2.4867 25 1 1.4863 0.6526 2.7215 26 6 1.9867 -1.2784 3.5045 27 7 2.2077 -0.8686 4.7356 28 14 1.9173 -3.1066 3.1269 29 1 3.2478 -3.5649 2.6526 30 1 1.5463 -3.8523 4.3563 31 1 0.9027 -3.3559 2.0716 32 1 -0.3633 0.5206 0.8861 33 1 -0.3634 -1.0276 0.0079 34 1 -0.3634 0.5071 -0.8938 35 1 2.7186 1.0960 -2.0512 36 1 2.6816 -0.4249 -6.5274 37 1 2.9367 1.2206 -8.6405 38 1 5.6468 2.3608 -7.8204 39 1 5.3011 0.6482 -8.1607 40 1 4.6339 1.2415 -10.4736 41 1 6.3021 1.7635 -10.1362 42 1 5.0281 3.5477 -11.2946 43 1 5.4874 4.0543 -9.6511 44 1 2.7774 2.9136 -10.4704 45 1 3.1230 4.6265 -10.1305 46 1 2.1224 3.5118 -8.1543 47 1 3.7904 4.0330 -7.8168 48 1 4.1654 -0.8698 -0.6594 49 1 3.4858 -2.4128 -1.2762 50 1 3.6716 -2.0319 1.3950 51 1 2.1886 -2.7705 0.7166 52 1 2.3350 -1.5159 5.4467 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088628489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:16 Heat of formation + Delta-G solvation = 38.878246 kcal Electronic energy + Delta-G solvation = -30272.397743 eV Core-core repulsion = 26272.955512 eV Total energy + Delta-G solvation = -3999.442231 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.98154 -39.58934 -38.91299 -37.70679 -34.11358 -33.09796 -32.27020 -31.85634 -31.27388 -30.64962 -29.50065 -28.90245 -25.46394 -24.01104 -23.77909 -23.31047 -23.00610 -21.33999 -21.03959 -20.42331 -20.08981 -19.20978 -18.05031 -16.89458 -16.84089 -16.03892 -15.91725 -15.60767 -14.99081 -14.82464 -14.75448 -14.60016 -14.47926 -14.28465 -13.86201 -13.70671 -13.34066 -13.07238 -12.92908 -12.76232 -12.72553 -12.62799 -12.08591 -11.91661 -11.81493 -11.73231 -11.51858 -11.18706 -11.14440 -10.97784 -10.85871 -10.81456 -10.72587 -10.70372 -10.42433 -10.15254 -9.94720 -9.89906 -9.58533 -9.39672 -9.19584 -8.76679 -8.60480 -7.04040 -5.91193 -3.21750 1.45830 1.89235 2.58128 3.27525 3.39824 3.46186 3.53270 3.56130 3.95608 4.08112 4.19271 4.34389 4.52770 4.59097 4.62119 4.68671 4.86545 4.90067 4.92335 4.94336 5.06839 5.13813 5.21563 5.25756 5.29721 5.38225 5.42786 5.44203 5.48323 5.53641 5.56920 5.65308 5.67646 5.70677 5.77863 5.88015 5.91763 6.00278 6.10990 6.16215 6.24113 6.36171 6.46748 6.52251 6.67206 6.70656 6.79257 6.86442 7.03807 7.52509 7.74008 7.80205 8.32815 8.35639 8.86179 9.72180 10.20108 11.24719 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.030947 B = 0.001888 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.549148 B =14829.460846 C =15062.606698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.047 0.953 4 C 0.134 3.866 5 H 0.100 0.900 6 N -0.701 5.701 7 C 0.602 3.398 8 O -0.535 6.535 9 C -0.005 4.005 10 C -0.175 4.175 11 C 0.020 3.980 12 C -0.017 4.017 13 C -0.113 4.113 14 C -0.120 4.120 15 C -0.122 4.122 16 C -0.118 4.118 17 C -0.119 4.119 18 N -0.378 5.378 19 H 0.442 0.558 20 N -0.256 5.256 21 C -0.141 4.141 22 C 0.112 3.888 23 N -0.601 5.601 24 C -0.236 4.236 25 H 0.092 0.908 26 C 0.022 3.978 27 N -0.909 5.909 28 Si 0.881 3.119 29 H -0.285 1.285 30 H -0.303 1.303 31 H -0.276 1.276 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.041 0.959 35 H 0.406 0.594 36 H 0.161 0.839 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.072 0.928 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.028 0.972 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.074 9.934 -32.442 34.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.065 0.935 4 C 0.029 3.971 5 H 0.118 0.882 6 N -0.351 5.351 7 C 0.386 3.614 8 O -0.410 6.410 9 C -0.166 4.166 10 C -0.203 4.203 11 C -0.105 4.105 12 C -0.037 4.037 13 C -0.151 4.151 14 C -0.157 4.157 15 C -0.160 4.160 16 C -0.156 4.156 17 C -0.157 4.157 18 N -0.093 5.093 19 H 0.287 0.713 20 N -0.092 5.092 21 C -0.180 4.180 22 C -0.014 4.014 23 N -0.327 5.327 24 C -0.363 4.363 25 H 0.110 0.890 26 C -0.176 4.176 27 N -0.553 5.553 28 Si 0.711 3.289 29 H -0.212 1.212 30 H -0.231 1.231 31 H -0.201 1.201 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.242 0.758 36 H 0.179 0.821 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.081 0.919 51 H 0.045 0.955 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.985 9.848 -31.498 33.376 hybrid contribution 0.076 -0.732 -0.530 0.907 sum 5.061 9.116 -32.028 33.682 Atomic orbital electron populations 1.22204 0.97170 1.01538 1.00563 1.21087 0.92910 0.95315 0.85905 0.93516 1.22177 0.97157 0.91081 0.86686 0.88237 1.45874 1.67220 1.16565 1.05473 1.16875 0.77447 0.85691 0.81421 1.90791 1.48647 1.19305 1.82273 1.21996 1.07913 0.91903 0.94827 1.21502 1.07380 0.99061 0.92318 1.21341 1.06024 0.90781 0.92383 1.19830 0.98048 0.98275 0.87500 1.21620 0.94486 1.02492 0.96469 1.21543 1.01597 0.96834 0.95754 1.21573 0.96279 0.96905 1.01237 1.21520 0.96801 1.01818 0.95416 1.21644 1.01727 0.95180 0.97175 1.43265 1.49241 1.13839 1.02913 0.71339 1.73591 1.16956 1.09904 1.08743 1.23146 0.97651 1.00161 0.97052 1.21961 0.95232 0.91111 0.93079 1.44815 1.57546 1.28881 1.01468 1.18579 1.42377 0.96741 0.78643 0.89000 1.24982 1.00179 0.97663 0.94825 1.69835 1.50908 1.33932 1.00590 0.87005 0.78286 0.87458 0.76107 1.21196 1.23120 1.20137 0.91981 0.93020 0.94031 0.75839 0.82112 0.88357 0.91945 0.91073 0.91589 0.91649 0.91856 0.91986 0.91520 0.91676 0.91245 0.92189 0.90885 0.91163 0.91941 0.95454 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.14 37.16 0.34 -2.57 16 2 C 0.16 3.06 3.48 -66.95 -0.23 2.83 16 3 H 0.05 0.90 7.72 -51.93 -0.40 0.50 16 4 C 0.13 2.37 2.84 -66.09 -0.19 2.18 16 5 H 0.10 1.86 7.26 -51.93 -0.38 1.48 16 6 N -0.70 -10.73 5.17 -53.01 -0.27 -11.01 16 7 C 0.60 9.52 7.82 -12.39 -0.10 9.43 16 8 O -0.54 -9.97 16.57 5.30 0.09 -9.88 16 9 C -0.01 -0.07 7.13 -82.76 -0.59 -0.66 16 10 C -0.17 -1.93 10.73 -39.36 -0.42 -2.35 16 11 C 0.02 0.17 5.92 -82.21 -0.49 -0.32 16 12 C -0.02 -0.09 2.59 -91.77 -0.24 -0.32 16 13 C -0.11 -0.56 5.19 -26.73 -0.14 -0.69 16 14 C -0.12 -0.48 5.92 -26.73 -0.16 -0.63 16 15 C -0.12 -0.44 5.92 -26.73 -0.16 -0.60 16 16 C -0.12 -0.42 5.92 -26.70 -0.16 -0.58 16 17 C -0.12 -0.49 4.96 -26.71 -0.13 -0.62 16 18 N -0.38 -3.10 6.64 33.50 0.22 -2.88 16 19 H 0.44 2.21 8.14 -190.44 -1.55 0.66 16 20 N -0.26 -2.97 11.92 33.42 0.40 -2.57 16 21 C -0.14 -2.58 6.77 -24.58 -0.17 -2.75 16 22 C 0.11 2.49 4.69 -2.53 -0.01 2.48 16 23 N -0.60 -14.45 2.94 -162.57 -0.48 -14.93 16 24 C -0.24 -6.64 10.17 -15.06 -0.15 -6.79 16 25 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 26 C 0.02 0.64 5.43 -17.43 -0.09 0.55 16 27 N -0.91 -28.09 13.97 55.49 0.78 -27.31 16 28 Si 0.88 22.91 24.27 -169.99 -4.13 18.78 16 29 H -0.28 -7.15 6.49 56.52 0.37 -6.79 16 30 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 31 H -0.28 -7.11 6.66 56.52 0.38 -6.73 16 32 H 0.06 1.23 8.03 -51.93 -0.42 0.81 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.41 5.64 8.10 -40.82 -0.33 5.31 16 36 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.20 7.43 -51.93 -0.39 -0.19 16 48 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 49 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.06 1.47 6.64 -51.93 -0.34 1.13 16 51 H 0.03 0.64 5.58 -51.93 -0.29 0.35 16 52 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 403.68 15.07 6.08 6.08 Total: -1.00 -33.63 403.68 -10.45 -44.08 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -10.06 Total: 1.06 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -3.09 Total: -1.44 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.64 Total: -58.70 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.13 Total: 18.78 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.63 -10.45 -44.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088628489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.962 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds