Wall clock time and date at job start Wed Apr 1 2020 04:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.87195 * 2 1 4 4 C 1.54328 * 109.87848 * 238.82680 * 2 1 3 5 5 H 1.09001 * 110.72067 * 336.74921 * 4 2 1 6 6 N 1.46503 * 110.72149 * 100.02625 * 4 2 1 7 7 C 1.34769 * 119.99872 * 204.99931 * 6 4 2 8 8 O 1.21577 * 120.00423 * 0.02562 * 7 6 4 9 9 C 1.47709 * 119.99974 * 179.97438 * 7 6 4 10 10 C 1.41505 * 126.51844 * 179.71300 * 9 7 6 11 11 C 1.35363 * 105.50325 * 179.84288 * 10 9 7 12 12 C 1.50698 * 126.38886 * 180.14305 * 11 10 9 13 13 C 1.53001 * 109.47080 * 265.30141 * 12 11 10 14 14 C 1.52999 * 109.47524 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47290 * 59.99681 * 14 13 12 16 16 C 1.53001 * 109.47097 * 300.00580 * 15 14 13 17 17 C 1.52997 * 109.47600 * 145.29904 * 12 11 10 18 18 N 1.35040 * 107.22560 * 0.41315 * 11 10 9 19 19 H 0.97001 * 124.87940 * 179.72234 * 18 11 10 20 20 N 1.28462 * 110.23458 * 359.72630 * 18 11 10 21 21 C 1.55161 * 102.94007 * 218.38605 * 4 2 1 22 22 C 1.54911 * 101.58121 * 35.50246 * 21 4 2 23 23 N 1.47019 * 109.88443 * 121.01780 * 2 1 3 24 24 C 1.36939 * 125.65017 * 298.31534 * 23 2 1 25 25 H 1.07999 * 119.99598 * 341.50761 * 24 23 2 26 26 C 1.38807 * 120.00201 * 161.49470 * 24 23 2 27 27 N 1.31619 * 120.00244 * 157.62938 * 26 24 23 28 28 Si 1.86806 * 119.99966 * 337.62860 * 26 24 23 29 29 H 1.48497 * 109.47000 * 84.53743 * 28 26 24 30 30 H 1.48500 * 109.47414 * 204.54010 * 28 26 24 31 31 H 1.48499 * 109.47120 * 324.53683 * 28 26 24 32 32 H 1.09006 * 109.46791 * 300.43483 * 1 2 3 33 33 H 1.09002 * 109.47241 * 180.44268 * 1 2 3 34 34 H 1.08997 * 109.47535 * 60.43256 * 1 2 3 35 35 H 0.96998 * 119.99549 * 24.99645 * 6 4 2 36 36 H 1.08004 * 127.24556 * 359.97438 * 10 9 7 37 37 H 1.09008 * 109.46988 * 25.29376 * 12 11 10 38 38 H 1.09006 * 109.46779 * 299.99985 * 13 12 11 39 39 H 1.09000 * 109.47117 * 59.99157 * 13 12 11 40 40 H 1.09000 * 109.46564 * 299.99540 * 14 13 12 41 41 H 1.08998 * 109.47083 * 179.97438 * 14 13 12 42 42 H 1.08993 * 109.47475 * 180.02562 * 15 14 13 43 43 H 1.09000 * 109.46994 * 59.99545 * 15 14 13 44 44 H 1.08997 * 109.47019 * 299.99678 * 16 15 14 45 45 H 1.09001 * 109.47174 * 179.97438 * 16 15 14 46 46 H 1.08997 * 109.46823 * 300.00422 * 17 12 11 47 47 H 1.08997 * 109.46923 * 59.99964 * 17 12 11 48 48 H 1.08996 * 111.00629 * 277.42635 * 21 4 2 49 49 H 1.08998 * 111.03539 * 153.59027 * 21 4 2 50 50 H 1.08999 * 110.37163 * 204.14908 * 22 21 4 51 51 H 1.09003 * 110.36773 * 81.82763 * 22 21 4 52 52 H 0.96996 * 120.00123 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0547 -0.7512 -1.2418 5 1 1.3050 -1.4482 -1.6163 6 7 2.4553 0.1929 -2.2879 7 6 2.4580 -0.1933 -3.5791 8 8 2.1274 -1.3250 -3.8758 9 6 2.8613 0.7588 -4.6339 10 6 2.9199 0.5004 -6.0239 11 6 3.3347 1.6579 -6.5900 12 6 3.5548 1.9056 -8.0601 13 6 5.0286 1.6759 -8.4009 14 6 5.2520 1.9268 -9.8936 15 6 4.8693 3.3691 -10.2312 16 6 3.3956 3.5988 -9.8904 17 6 3.1723 3.3481 -8.3972 18 7 3.5203 2.5475 -5.5911 19 1 3.8216 3.4617 -5.7113 20 7 3.2405 2.0090 -4.4588 21 6 3.2876 -1.5152 -0.6904 22 6 2.8146 -1.8784 0.7393 23 7 2.0300 -0.7124 1.1848 24 6 1.8051 -0.3522 2.4867 25 1 1.4863 0.6526 2.7215 26 6 1.9867 -1.2784 3.5045 27 7 2.2077 -0.8686 4.7356 28 14 1.9173 -3.1066 3.1269 29 1 3.2478 -3.5649 2.6526 30 1 1.5463 -3.8523 4.3563 31 1 0.9027 -3.3559 2.0716 32 1 -0.3633 0.5206 0.8861 33 1 -0.3634 -1.0276 0.0079 34 1 -0.3634 0.5071 -0.8938 35 1 2.7186 1.0960 -2.0512 36 1 2.6816 -0.4249 -6.5274 37 1 2.9367 1.2206 -8.6405 38 1 5.6468 2.3608 -7.8204 39 1 5.3011 0.6482 -8.1607 40 1 4.6339 1.2415 -10.4736 41 1 6.3021 1.7635 -10.1362 42 1 5.0281 3.5477 -11.2946 43 1 5.4874 4.0543 -9.6511 44 1 2.7774 2.9136 -10.4704 45 1 3.1230 4.6265 -10.1305 46 1 2.1224 3.5118 -8.1543 47 1 3.7904 4.0330 -7.8168 48 1 4.1654 -0.8698 -0.6594 49 1 3.4858 -2.4128 -1.2762 50 1 3.6716 -2.0319 1.3950 51 1 2.1886 -2.7705 0.7166 52 1 2.3350 -1.5159 5.4467 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088628489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:15 Heat of formation + Delta-G solvation = 16.774038 kcal Electronic energy + Delta-G solvation = -30273.356253 eV Core-core repulsion = 26272.955512 eV Total energy + Delta-G solvation = -4000.400741 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.78290 -40.93984 -39.40850 -39.17260 -35.66308 -34.16639 -33.55535 -32.91801 -32.26579 -31.62220 -31.08882 -29.70164 -26.92039 -25.86810 -24.88722 -23.94336 -23.44007 -22.59654 -22.07721 -21.54917 -20.99066 -20.38412 -18.87705 -18.69501 -17.93733 -17.51080 -16.94806 -16.82698 -16.16068 -16.00282 -15.63148 -15.35829 -15.19654 -15.13941 -15.01595 -14.91333 -14.58091 -14.56550 -14.40007 -13.98218 -13.55437 -13.42364 -13.22469 -13.11222 -13.07482 -12.91434 -12.60192 -12.46448 -12.36270 -12.13661 -12.04916 -12.02925 -11.82295 -11.61866 -11.50400 -11.37443 -11.28026 -11.14649 -11.03439 -10.80553 -10.48394 -10.04228 -9.93247 -9.07876 -8.15948 -5.42467 0.49167 1.09767 1.31617 1.40304 1.48185 1.80627 2.15425 2.33591 2.42664 3.04294 3.24855 3.40626 3.47390 3.64195 3.73384 3.74900 3.86481 4.10403 4.12243 4.21283 4.26822 4.32190 4.35843 4.42395 4.53133 4.53920 4.58177 4.59466 4.61018 4.73375 4.75470 4.79137 4.79832 4.88233 4.98697 5.04135 5.07007 5.15128 5.15704 5.21559 5.26236 5.27892 5.30375 5.34596 5.40885 5.44966 5.52395 5.58014 5.70004 6.06067 6.12347 6.43925 6.75477 6.85696 7.13344 7.54640 8.10331 9.03529 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.030947 B = 0.001888 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.549148 B =14829.460846 C =15062.606698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.151 3.849 3 H 0.055 0.945 4 C 0.149 3.851 5 H 0.094 0.906 6 N -0.693 5.693 7 C 0.604 3.396 8 O -0.567 6.567 9 C -0.031 4.031 10 C -0.194 4.194 11 C 0.044 3.956 12 C -0.012 4.012 13 C -0.110 4.110 14 C -0.118 4.118 15 C -0.122 4.122 16 C -0.116 4.116 17 C -0.118 4.118 18 N -0.360 5.360 19 H 0.458 0.542 20 N -0.264 5.264 21 C -0.128 4.128 22 C 0.106 3.894 23 N -0.616 5.616 24 C -0.221 4.221 25 H 0.065 0.935 26 C -0.034 4.034 27 N -0.954 5.954 28 Si 0.938 3.062 29 H -0.271 1.271 30 H -0.309 1.309 31 H -0.272 1.272 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.414 0.586 36 H 0.162 0.838 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.082 0.918 49 H 0.085 0.915 50 H 0.047 0.953 51 H 0.024 0.976 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.667 10.710 -35.795 37.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.045 3.955 3 H 0.073 0.927 4 C 0.043 3.957 5 H 0.112 0.888 6 N -0.344 5.344 7 C 0.390 3.610 8 O -0.444 6.444 9 C -0.191 4.191 10 C -0.223 4.223 11 C -0.083 4.083 12 C -0.032 4.032 13 C -0.148 4.148 14 C -0.155 4.155 15 C -0.159 4.159 16 C -0.154 4.154 17 C -0.156 4.156 18 N -0.077 5.077 19 H 0.306 0.694 20 N -0.102 5.102 21 C -0.168 4.168 22 C -0.019 4.019 23 N -0.343 5.343 24 C -0.349 4.349 25 H 0.083 0.917 26 C -0.229 4.229 27 N -0.601 5.601 28 Si 0.767 3.233 29 H -0.197 1.197 30 H -0.238 1.238 31 H -0.198 1.198 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.251 0.749 36 H 0.180 0.820 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.104 0.896 50 H 0.066 0.934 51 H 0.042 0.958 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.590 10.658 -34.903 36.919 hybrid contribution -0.083 -0.816 0.383 0.905 sum 5.507 9.843 -34.519 36.315 Atomic orbital electron populations 1.22110 0.96240 1.01161 1.01236 1.21244 0.93631 0.95421 0.85210 0.92728 1.21838 0.96616 0.90954 0.86305 0.88769 1.45700 1.67173 1.16496 1.05009 1.17160 0.76527 0.85678 0.81647 1.90768 1.50116 1.20807 1.82755 1.21691 1.10155 0.92355 0.94867 1.21654 1.08613 1.00303 0.91682 1.21636 1.03604 0.89563 0.93458 1.19922 0.98500 0.99424 0.85367 1.21591 0.94009 1.01987 0.97257 1.21527 1.01802 0.97267 0.94934 1.21571 0.96278 0.96493 1.01562 1.21509 0.96775 1.02206 0.94899 1.21647 1.01802 0.94282 0.97828 1.43341 1.47683 1.14507 1.02178 0.69426 1.73523 1.17203 1.09344 1.10092 1.23062 0.98062 1.01114 0.94513 1.22013 0.94396 0.90401 0.95135 1.44876 1.58402 1.29707 1.01266 1.18499 1.40219 0.95596 0.80627 0.91678 1.25542 1.01221 1.01352 0.94781 1.69946 1.53545 1.35018 1.01608 0.86078 0.78852 0.82826 0.75537 1.19720 1.23757 1.19777 0.93633 0.93864 0.91021 0.74854 0.82018 0.87848 0.91829 0.91988 0.91421 0.91482 0.91445 0.91862 0.91494 0.91100 0.91437 0.91140 0.89965 0.89596 0.93448 0.95850 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.41 9.14 71.98 0.66 -4.75 16 2 C 0.15 5.80 3.48 45.34 0.16 5.96 16 3 H 0.05 2.03 7.72 -2.39 -0.02 2.02 16 4 C 0.15 5.02 2.84 46.18 0.13 5.15 16 5 H 0.09 3.36 7.26 -2.39 -0.02 3.35 16 6 N -0.69 -20.07 5.17 -439.89 -2.28 -22.34 16 7 C 0.60 18.36 7.82 86.75 0.68 19.04 16 8 O -0.57 -20.62 16.57 -3.96 -0.07 -20.69 16 9 C -0.03 -0.78 7.13 42.46 0.30 -0.48 16 10 C -0.19 -4.01 10.73 22.41 0.24 -3.77 16 11 C 0.04 0.61 5.92 41.40 0.25 0.86 16 12 C -0.01 -0.10 2.59 -11.54 -0.03 -0.13 16 13 C -0.11 -0.84 5.19 30.59 0.16 -0.68 16 14 C -0.12 -0.67 5.92 30.59 0.18 -0.49 16 15 C -0.12 -0.56 5.92 30.59 0.18 -0.38 16 16 C -0.12 -0.52 5.92 30.61 0.18 -0.34 16 17 C -0.12 -0.62 4.96 30.61 0.15 -0.47 16 18 N -0.36 -4.99 6.64 -47.93 -0.32 -5.31 16 19 H 0.46 3.16 8.14 -219.99 -1.79 1.37 16 20 N -0.26 -5.60 11.92 -48.17 -0.57 -6.17 16 21 C -0.13 -4.48 6.77 31.99 0.22 -4.26 16 22 C 0.11 4.60 4.69 86.86 0.41 5.01 16 23 N -0.62 -29.45 2.94 -668.25 -1.96 -31.41 16 24 C -0.22 -12.61 10.17 84.03 0.85 -11.76 16 25 H 0.07 3.99 8.06 -2.91 -0.02 3.97 16 26 C -0.03 -2.05 5.43 84.86 0.46 -1.59 16 27 N -0.95 -60.52 13.97 21.65 0.30 -60.22 16 28 Si 0.94 47.88 24.27 68.60 1.67 49.55 16 29 H -0.27 -13.10 6.49 99.48 0.65 -12.45 16 30 H -0.31 -15.95 7.11 99.48 0.71 -15.25 16 31 H -0.27 -13.59 6.66 99.48 0.66 -12.93 16 32 H 0.04 1.79 8.03 -2.38 -0.02 1.77 16 33 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.41 10.73 8.10 -92.71 -0.75 9.98 16 36 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 37 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.07 0.23 7.43 -2.39 -0.02 0.22 16 48 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 49 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 50 H 0.05 2.20 6.64 -2.39 -0.02 2.18 16 51 H 0.02 1.07 5.58 -2.39 -0.01 1.05 16 52 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -73.15 403.68 0.23 -72.92 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -1.72 Total: 16.74 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 5.18 Total: 6.93 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -4.83 Total: -125.45 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.07 Total: -20.69 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 1.67 Total: 49.55 kcal Total: -73.15 0.23 -72.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088628489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.696 kcal (2) G-P(sol) polarization free energy of solvation -73.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds