Wall clock time and date at job start Wed Apr 1 2020 04:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.87515 * 2 1 4 4 C 1.54419 * 110.00586 * 238.90878 * 2 1 3 5 5 H 1.09003 * 110.72673 * 336.66499 * 4 2 1 6 6 N 1.46502 * 110.76005 * 99.96545 * 4 2 1 7 7 C 1.34784 * 120.00058 * 199.94376 * 6 4 2 8 8 O 1.21604 * 119.99844 * 359.97438 * 7 6 4 9 9 C 1.47432 * 119.99836 * 180.02562 * 7 6 4 10 10 C 1.38042 * 126.41523 * 359.68365 * 9 7 6 11 11 N 1.34262 * 107.41762 * 179.87284 * 10 9 7 12 12 H 0.96995 * 125.75624 * 180.10782 * 11 10 9 13 13 N 1.39932 * 108.48783 * 0.39290 * 11 10 9 14 14 C 1.30444 * 108.90136 * 359.75480 * 13 11 10 15 15 C 1.50700 * 125.99149 * 179.97438 * 14 13 11 16 16 C 1.52994 * 109.47298 * 59.99470 * 15 14 13 17 17 C 1.53001 * 109.47455 * 180.02562 * 16 15 14 18 18 C 1.53004 * 109.46759 * 59.99779 * 17 16 15 19 19 C 1.52994 * 109.47317 * 300.00305 * 18 17 16 20 20 C 1.52992 * 109.47303 * 60.00147 * 19 18 17 21 21 C 1.55158 * 102.89630 * 218.32008 * 4 2 1 22 22 C 1.54914 * 101.61377 * 35.50284 * 21 4 2 23 23 N 1.47023 * 109.88265 * 121.01573 * 2 1 3 24 24 C 1.36940 * 125.64842 * 298.47690 * 23 2 1 25 25 H 1.07997 * 119.99801 * 349.86576 * 24 23 2 26 26 C 1.38817 * 119.99970 * 169.86600 * 24 23 2 27 27 N 1.31618 * 119.99610 * 350.47893 * 26 24 23 28 28 Si 1.86791 * 119.99937 * 170.47910 * 26 24 23 29 29 H 1.48502 * 109.47028 * 94.13766 * 28 26 24 30 30 H 1.48497 * 109.47230 * 214.13656 * 28 26 24 31 31 H 1.48506 * 109.47338 * 334.13707 * 28 26 24 32 32 H 1.09002 * 109.46837 * 300.43663 * 1 2 3 33 33 H 1.08991 * 109.47415 * 60.43330 * 1 2 3 34 34 H 1.08998 * 109.47095 * 180.44213 * 1 2 3 35 35 H 0.97005 * 120.00212 * 19.94367 * 6 4 2 36 36 H 1.08002 * 126.29011 * 0.02831 * 10 9 7 37 37 H 1.09001 * 109.47264 * 179.97438 * 15 14 13 38 38 H 1.09001 * 109.47008 * 300.00211 * 16 15 14 39 39 H 1.09003 * 109.47232 * 59.99794 * 16 15 14 40 40 H 1.09001 * 109.46565 * 300.00205 * 17 16 15 41 41 H 1.08997 * 109.47567 * 180.02562 * 17 16 15 42 42 H 1.09000 * 109.46363 * 179.97438 * 18 17 16 43 43 H 1.08992 * 109.46939 * 60.00871 * 18 17 16 44 44 H 1.09001 * 109.47008 * 300.00059 * 19 18 17 45 45 H 1.09003 * 109.47232 * 180.02562 * 19 18 17 46 46 H 1.08997 * 109.47416 * 179.97438 * 20 19 18 47 47 H 1.09001 * 109.47160 * 60.00005 * 20 19 18 48 48 H 1.08997 * 111.00685 * 277.40746 * 21 4 2 49 49 H 1.09000 * 111.00155 * 153.59524 * 21 4 2 50 50 H 1.08994 * 110.36624 * 81.81233 * 22 21 4 51 51 H 1.08998 * 110.36103 * 204.13060 * 22 21 4 52 52 H 0.97000 * 119.99533 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0583 -0.7493 -1.2426 5 1 1.3107 -1.4477 -1.6187 6 7 2.4587 0.1960 -2.2877 7 6 2.5622 -0.2172 -3.5665 8 8 2.3237 -1.3748 -3.8526 9 6 2.9657 0.7340 -4.6181 10 6 3.2612 2.0712 -4.4441 11 7 3.5834 2.5715 -5.6476 12 1 3.8381 3.4895 -5.8301 13 7 3.4834 1.5469 -6.5954 14 6 3.1165 0.4491 -5.9938 15 6 2.8922 -0.8884 -6.6509 16 6 4.1875 -1.3511 -7.3208 17 6 3.9596 -2.7088 -7.9885 18 6 2.8579 -2.5802 -9.0424 19 6 1.5626 -2.1175 -8.3725 20 6 1.7905 -0.7599 -7.7049 21 6 3.2918 -1.5108 -0.6893 22 6 2.8176 -1.8763 0.7395 23 7 2.0301 -0.7124 1.1849 24 6 1.8025 -0.3538 2.4868 25 1 1.3538 0.6021 2.7130 26 6 2.1487 -1.2190 3.5157 27 7 2.5190 -2.4520 3.2420 28 14 2.0888 -0.6334 5.2884 29 1 0.7754 -0.9890 5.8831 30 1 3.1755 -1.2857 6.0622 31 1 2.2680 0.8403 5.3292 32 1 -0.3633 0.5206 0.8861 33 1 -0.3634 0.5070 -0.8937 34 1 -0.3633 -1.0276 0.0079 35 1 2.6494 1.1193 -2.0595 36 1 3.2398 2.6144 -3.5109 37 1 2.5924 -1.6174 -5.8980 38 1 4.4876 -0.6222 -8.0736 39 1 4.9724 -1.4422 -6.5701 40 1 3.6592 -3.4378 -7.2359 41 1 4.8825 -3.0387 -8.4654 42 1 2.6960 -3.5474 -9.5184 43 1 3.1583 -1.8512 -9.7949 44 1 1.2623 -2.8466 -7.6200 45 1 0.7777 -2.0264 -9.1233 46 1 0.8676 -0.4300 -7.2279 47 1 2.0909 -0.0308 -8.4574 48 1 4.1682 -0.8635 -0.6565 49 1 3.4927 -2.4074 -1.2757 50 1 2.1937 -2.7697 0.7151 51 1 3.6742 -2.0286 1.3960 52 1 2.7612 -3.0565 3.9610 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088973077.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:25 Heat of formation + Delta-G solvation = 13.187497 kcal Electronic energy + Delta-G solvation = -31093.071936 eV Core-core repulsion = 27092.515670 eV Total energy + Delta-G solvation = -4000.556265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.48266 -40.56942 -39.23484 -38.89894 -35.53152 -33.91752 -33.72945 -32.06447 -31.62117 -31.53802 -30.52184 -30.09313 -26.53480 -25.81260 -24.46003 -23.94758 -23.44008 -22.16923 -21.52982 -21.40759 -20.55857 -20.14459 -19.24356 -18.63542 -17.56068 -17.02779 -16.53159 -16.46060 -16.19409 -15.73723 -15.51035 -15.19806 -15.14413 -15.04979 -14.96650 -14.79940 -14.32082 -14.24681 -13.94579 -13.76212 -13.41202 -13.16216 -13.06641 -13.05034 -12.87047 -12.78295 -12.56063 -12.25882 -12.16143 -12.04010 -12.00220 -11.95089 -11.87593 -11.58695 -11.47393 -11.39523 -11.17287 -11.09504 -10.68925 -10.58782 -10.39240 -10.05682 -9.68130 -8.83615 -7.82694 -5.17633 0.58704 1.12845 1.49587 1.50330 1.59717 1.83316 2.26679 2.50105 2.55926 3.37543 3.43486 3.62653 3.66669 3.89141 3.91836 3.92269 3.99712 4.04867 4.25564 4.26317 4.36172 4.40989 4.48856 4.54665 4.59414 4.63800 4.65714 4.65936 4.67352 4.72250 4.79084 4.87378 4.96916 5.02004 5.10744 5.14078 5.18628 5.24495 5.28624 5.30859 5.37210 5.43731 5.43885 5.47800 5.52287 5.60816 5.63841 5.72282 5.74750 6.24344 6.31237 6.53454 6.76119 7.11331 7.41106 7.80440 8.46890 9.29428 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.002349 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.750706 B =11917.136675 C =12612.671431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.152 3.848 3 H 0.060 0.940 4 C 0.158 3.842 5 H 0.076 0.924 6 N -0.701 5.701 7 C 0.593 3.407 8 O -0.580 6.580 9 C -0.319 4.319 10 C 0.136 3.864 11 N -0.446 5.446 12 H 0.461 0.539 13 N -0.314 5.314 14 C 0.131 3.869 15 C -0.024 4.024 16 C -0.099 4.099 17 C -0.119 4.119 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.099 4.099 21 C -0.138 4.138 22 C 0.182 3.818 23 N -0.612 5.612 24 C -0.229 4.229 25 H 0.086 0.914 26 C -0.067 4.067 27 N -0.951 5.951 28 Si 0.974 3.026 29 H -0.290 1.290 30 H -0.298 1.298 31 H -0.265 1.265 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.030 0.970 35 H 0.412 0.588 36 H 0.231 0.769 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.050 0.950 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.063 0.937 50 H -0.007 1.007 51 H 0.037 0.963 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.331 11.141 -23.878 26.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.046 3.954 3 H 0.077 0.923 4 C 0.052 3.948 5 H 0.094 0.906 6 N -0.352 5.352 7 C 0.382 3.618 8 O -0.461 6.461 9 C -0.334 4.334 10 C -0.018 4.018 11 N -0.152 5.152 12 H 0.310 0.690 13 N -0.136 5.136 14 C -0.037 4.037 15 C -0.045 4.045 16 C -0.138 4.138 17 C -0.156 4.156 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.137 4.137 21 C -0.178 4.178 22 C 0.056 3.944 23 N -0.338 5.338 24 C -0.358 4.358 25 H 0.103 0.897 26 C -0.260 4.260 27 N -0.600 5.600 28 Si 0.803 3.197 29 H -0.218 1.218 30 H -0.225 1.225 31 H -0.189 1.189 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.249 0.751 36 H 0.248 0.752 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.082 0.918 50 H 0.011 0.989 51 H 0.056 0.944 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.508 10.830 -25.003 27.363 hybrid contribution -0.094 0.167 2.364 2.372 sum 2.415 10.998 -22.639 25.284 Atomic orbital electron populations 1.22124 0.96841 1.00469 1.01142 1.21233 0.93220 0.95352 0.85632 0.92289 1.21629 0.95820 0.90851 0.86496 0.90601 1.45598 1.69777 1.13887 1.05935 1.17557 0.75777 0.86700 0.81777 1.90692 1.52652 1.20370 1.82362 1.20256 1.23418 0.95303 0.94383 1.23724 0.92638 0.92990 0.92497 1.46158 1.51875 1.12510 1.04645 0.69048 1.77068 1.25815 0.96047 1.14719 1.22487 0.94732 0.95212 0.91250 1.19979 0.97016 0.89935 0.97546 1.21442 0.95438 0.97800 0.99071 1.21538 0.99543 0.96206 0.98353 1.21520 0.94339 1.01801 0.97570 1.21534 0.98264 0.96041 0.99774 1.21437 0.96945 0.98311 0.96982 1.23185 0.97961 1.00139 0.96501 1.21107 0.93765 0.88653 0.90838 1.44735 1.58753 1.29339 1.00936 1.19345 1.34771 1.00003 0.81673 0.89665 1.25646 1.02856 0.95628 1.01900 1.70171 1.52840 1.05561 1.31403 0.85127 0.76591 0.77989 0.79982 1.21769 1.22469 1.18935 0.93450 0.90989 0.95098 0.75119 0.75243 0.88956 0.91477 0.93336 0.92702 0.90740 0.90909 0.91370 0.92674 0.90644 0.93149 0.91479 0.90851 0.91812 0.98892 0.94432 0.94500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.15 71.98 0.66 -4.51 16 2 C 0.15 5.68 3.47 45.37 0.16 5.83 16 3 H 0.06 1.95 7.69 -2.39 -0.02 1.94 16 4 C 0.16 5.45 2.76 46.21 0.13 5.58 16 5 H 0.08 2.94 7.42 -2.39 -0.02 2.92 16 6 N -0.70 -18.17 5.19 -439.99 -2.29 -20.45 16 7 C 0.59 17.13 7.81 86.66 0.68 17.81 16 8 O -0.58 -21.46 14.30 -4.04 -0.06 -21.52 16 9 C -0.32 -7.28 6.13 -20.15 -0.12 -7.41 16 10 C 0.14 1.76 11.52 84.27 0.97 2.73 16 11 N -0.45 -5.62 7.29 -56.31 -0.41 -6.03 16 12 H 0.46 2.12 8.96 -213.43 -1.91 0.21 16 13 N -0.31 -6.57 12.63 -46.68 -0.59 -7.16 16 14 C 0.13 3.17 5.77 43.52 0.25 3.42 16 15 C -0.02 -0.59 2.53 -11.54 -0.03 -0.62 16 16 C -0.10 -2.13 5.19 30.59 0.16 -1.97 16 17 C -0.12 -2.18 5.92 30.60 0.18 -2.00 16 18 C -0.11 -1.81 5.92 30.59 0.18 -1.63 16 19 C -0.12 -2.13 5.92 30.59 0.18 -1.94 16 20 C -0.10 -2.07 5.18 30.59 0.16 -1.91 16 21 C -0.14 -5.37 6.76 31.99 0.22 -5.16 16 22 C 0.18 9.05 5.42 86.86 0.47 9.52 16 23 N -0.61 -29.97 3.13 -668.08 -2.09 -32.06 16 24 C -0.23 -12.24 9.83 84.03 0.83 -11.41 16 25 H 0.09 4.30 7.85 -2.91 -0.02 4.27 16 26 C -0.07 -3.75 5.40 84.86 0.46 -3.29 16 27 N -0.95 -57.11 10.69 21.65 0.23 -56.88 16 28 Si 0.97 44.89 29.56 68.60 2.03 46.92 16 29 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 30 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 31 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 32 H 0.05 1.73 8.02 -2.39 -0.02 1.71 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.41 7.51 7.24 -92.70 -0.67 6.84 16 36 H 0.23 0.72 7.46 -2.91 -0.02 0.70 16 37 H 0.09 2.80 5.60 -2.39 -0.01 2.78 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 49 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 50 H -0.01 -0.39 8.07 -2.39 -0.02 -0.41 16 51 H 0.04 2.09 6.94 -2.39 -0.02 2.07 16 52 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -75.09 406.36 0.69 -74.40 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -1.66 Total: 19.75 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.52 Total: 3.04 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -5.14 Total: -122.59 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.06 Total: -21.52 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -75.09 0.69 -74.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088973077.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.586 kcal (2) G-P(sol) polarization free energy of solvation -75.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds