Wall clock time and date at job start Wed Apr 1 2020 05:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.63740 * 2 1 4 4 C 1.54324 * 110.72121 * 236.65898 * 2 1 3 5 5 N 1.47013 * 107.27055 * 219.44108 * 4 2 1 6 6 C 1.36945 * 125.64845 * 178.92001 * 5 4 2 7 7 H 1.07995 * 119.99867 * 180.02562 * 6 5 4 8 8 C 1.38815 * 119.99808 * 0.02562 * 6 5 4 9 9 N 1.31618 * 119.99812 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99984 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46949 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47286 * 120.00408 * 10 8 6 13 13 H 1.48505 * 109.47080 * 240.00371 * 10 8 6 14 14 C 1.47423 * 108.70749 * 358.94539 * 5 4 2 15 15 C 1.54906 * 104.83170 * 24.12163 * 14 5 4 16 16 H 1.09012 * 111.03590 * 81.08343 * 15 14 5 17 17 C 1.53001 * 111.00840 * 204.91866 * 15 14 5 18 18 N 1.46505 * 109.46850 * 287.20014 * 17 15 14 19 19 C 1.34780 * 119.99540 * 179.97438 * 18 17 15 20 20 O 1.21626 * 120.00047 * 5.29192 * 19 18 17 21 21 C 1.47169 * 119.99812 * 185.28928 * 19 18 17 22 22 C 1.38404 * 126.88172 * 266.97459 * 21 19 18 23 23 C 1.50696 * 127.32325 * 359.97438 * 22 21 19 24 24 C 1.53776 * 113.61679 * 239.71230 * 23 22 21 25 25 C 1.53784 * 87.08332 * 220.01920 * 24 23 22 26 26 C 1.53779 * 113.61411 * 142.21056 * 23 22 21 27 27 C 1.39674 * 105.35489 * 179.74029 * 22 21 19 28 28 N 1.30867 * 107.86395 * 0.25498 * 27 22 21 29 29 N 1.28442 * 110.92687 * 0.02562 * 28 27 22 30 30 C 1.46497 * 125.19165 * 179.97438 * 29 28 27 31 31 H 1.09001 * 109.47120 * 296.85738 * 1 2 3 32 32 H 1.08999 * 109.47098 * 56.86176 * 1 2 3 33 33 H 1.09004 * 109.46853 * 176.86153 * 1 2 3 34 34 H 1.09001 * 109.88314 * 338.86696 * 4 2 1 35 35 H 1.09004 * 109.87814 * 99.87166 * 4 2 1 36 36 H 0.96997 * 120.00211 * 179.97438 * 9 8 6 37 37 H 1.09004 * 110.36590 * 265.28524 * 14 5 4 38 38 H 1.08994 * 110.37036 * 142.96561 * 14 5 4 39 39 H 1.08998 * 109.47169 * 167.20149 * 17 15 14 40 40 H 1.08999 * 109.47027 * 47.19474 * 17 15 14 41 41 H 0.96996 * 119.99958 * 359.97438 * 18 17 15 42 42 H 1.08999 * 112.90719 * 10.96836 * 23 22 21 43 43 H 1.08999 * 113.61108 * 334.56448 * 24 23 22 44 44 H 1.08998 * 113.61448 * 105.47272 * 24 23 22 45 45 H 1.08999 * 113.61443 * 139.97982 * 25 24 23 46 46 H 1.08995 * 113.61662 * 270.88888 * 25 24 23 47 47 H 1.08999 * 113.62140 * 254.53436 * 26 23 22 48 48 H 1.09003 * 113.61420 * 25.43517 * 26 23 22 49 49 H 1.08002 * 126.07220 * 180.26489 * 27 22 21 50 50 H 1.08999 * 109.47206 * 85.23710 * 30 29 28 51 51 H 1.09001 * 109.46978 * 205.23844 * 30 29 28 52 52 H 1.08999 * 109.46996 * 325.23844 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7933 -1.2058 5 7 3.2445 -1.5519 -0.7362 6 6 4.0037 -2.4004 -1.4973 7 1 4.8457 -2.9135 -1.0568 8 6 3.6910 -2.6007 -2.8348 9 7 2.6651 -1.9749 -3.3716 10 14 4.7261 -3.7586 -3.8727 11 1 5.8122 -4.3335 -3.0390 12 1 3.8705 -4.8543 -4.3946 13 1 5.3183 -3.0087 -5.0095 14 6 3.4633 -1.2485 0.6897 15 6 2.0790 -0.7932 1.2152 16 1 1.4448 -1.6507 1.4409 17 6 2.2278 0.1123 2.4394 18 7 2.6328 -0.6917 3.5952 19 6 2.8259 -0.1021 4.7917 20 8 2.5716 1.0784 4.9361 21 6 3.3445 -0.8869 5.9236 22 6 2.6012 -1.5411 6.8906 23 6 1.0997 -1.5985 7.0053 24 6 0.5601 -1.0211 8.3245 25 6 -0.4450 -2.1850 8.3316 26 6 0.5696 -2.9629 7.4769 27 6 3.5385 -2.1412 7.7345 28 7 4.7312 -1.8457 7.2843 29 7 4.6559 -1.1127 6.2323 30 6 5.8014 -0.6022 5.4751 31 1 -0.3633 0.4643 0.9168 32 1 -0.3633 0.5618 -0.8605 33 1 -0.3633 -1.0262 -0.0563 34 1 1.3130 -1.4786 -1.5750 35 1 2.3716 -0.1060 -1.9986 36 1 2.4467 -2.1146 -4.3063 37 1 4.1932 -0.4464 0.7993 38 1 3.7960 -2.1404 1.2207 39 1 1.2748 0.5975 2.6504 40 1 2.9854 0.8704 2.2407 41 1 2.7621 -1.6482 3.4993 42 1 0.5916 -1.2149 6.1206 43 1 1.2780 -1.0593 9.1438 44 1 0.0937 -0.0422 8.2143 45 1 -0.6059 -2.6169 9.3194 46 1 -1.3753 -1.9617 7.8094 47 1 0.1109 -3.5515 6.6824 48 1 1.2902 -3.5319 8.0645 49 1 3.3182 -2.7427 8.6040 50 1 6.1267 -1.3548 4.7569 51 1 5.5113 0.3048 4.9447 52 1 6.6185 -0.3767 6.1604 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092621459.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:55 Heat of formation + Delta-G solvation = 79.019474 kcal Electronic energy + Delta-G solvation = -30946.575400 eV Core-core repulsion = 26948.873824 eV Total energy + Delta-G solvation = -3997.701576 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.73346 -39.59259 -38.80080 -38.02413 -34.79519 -33.52580 -33.02096 -31.42801 -30.78324 -29.30610 -27.66772 -26.10661 -25.78190 -25.59525 -25.13723 -23.39711 -22.22235 -21.58066 -20.32221 -20.03645 -19.26620 -19.25016 -18.08283 -16.84615 -16.60431 -16.07893 -15.86531 -15.77583 -15.28350 -14.94220 -14.67421 -14.45146 -14.19298 -13.79203 -13.50213 -13.27122 -13.12322 -13.06058 -12.97493 -12.74645 -12.63143 -12.57786 -12.41598 -11.89347 -11.76030 -11.46011 -11.27748 -11.11043 -10.85787 -10.84419 -10.80078 -10.67793 -10.51505 -10.41681 -10.15624 -10.03067 -9.97740 -9.79758 -9.62029 -9.32488 -9.14246 -8.82057 -8.65127 -6.88227 -5.75949 -3.09748 1.49529 1.93318 2.46196 2.61926 3.10585 3.36049 3.41622 3.44054 4.19201 4.39897 4.44164 4.48800 4.52753 4.61559 4.79309 4.86389 4.93680 4.99870 5.08661 5.12619 5.14883 5.25090 5.28672 5.40152 5.47410 5.50809 5.54181 5.56589 5.66322 5.67714 5.72531 5.78197 5.79835 5.95304 6.00778 6.06735 6.12283 6.20249 6.26598 6.28306 6.33503 6.42489 6.49706 6.54880 6.57566 6.69205 6.86744 7.31612 7.52308 7.59257 7.79505 7.88377 7.95962 8.21172 9.17342 9.77580 10.43238 11.35600 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012683 B = 0.002549 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.164170 B =10982.364410 C =11704.641491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.183 3.817 5 N -0.606 5.606 6 C -0.229 4.229 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.920 5.920 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.290 1.290 14 C 0.142 3.858 15 C -0.113 4.113 16 H 0.082 0.918 17 C 0.131 3.869 18 N -0.709 5.709 19 C 0.590 3.410 20 O -0.524 6.524 21 C -0.026 4.026 22 C -0.143 4.143 23 C -0.038 4.038 24 C -0.129 4.129 25 C -0.143 4.143 26 C -0.130 4.130 27 C 0.008 3.992 28 N -0.284 5.284 29 N -0.271 5.271 30 C 0.085 3.915 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.252 0.748 37 H 0.018 0.982 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.405 0.595 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.084 0.916 49 H 0.182 0.818 50 H 0.090 0.910 51 H 0.093 0.907 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.957 1.422 21.754 22.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.568 5.568 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.217 1.217 13 H -0.217 1.217 14 C 0.016 3.984 15 C -0.133 4.133 16 H 0.100 0.900 17 C 0.008 3.992 18 N -0.360 5.360 19 C 0.372 3.628 20 O -0.399 6.399 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.058 4.058 24 C -0.166 4.166 25 C -0.181 4.181 26 C -0.167 4.167 27 C -0.170 4.170 28 N -0.114 5.114 29 N -0.059 5.059 30 C -0.055 4.055 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.036 0.964 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.240 0.760 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.088 0.912 48 H 0.102 0.898 49 H 0.199 0.801 50 H 0.108 0.892 51 H 0.112 0.888 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.813 2.123 21.701 21.880 hybrid contribution -0.095 -0.921 -0.910 1.299 sum -1.908 1.201 20.791 20.913 Atomic orbital electron populations 1.21701 0.95239 1.01679 1.00613 1.22441 0.95227 0.99082 0.96198 0.91393 1.21221 0.89097 0.93091 0.90715 1.44460 1.32622 1.51434 1.04675 1.19081 1.07633 1.17676 0.91358 0.90487 1.24804 0.98407 1.00284 0.96914 1.69967 1.28745 1.45453 1.12606 0.86059 0.79276 0.80145 0.80357 1.20542 1.21735 1.21732 1.21574 0.92935 0.96938 0.86976 1.22693 0.99541 0.98101 0.92976 0.90001 1.21518 1.00536 0.93729 0.83414 1.46113 1.68691 1.12572 1.08664 1.17014 0.78375 0.86062 0.81333 1.90848 1.50778 1.15294 1.82961 1.21388 0.85584 1.07296 1.01235 1.20474 0.95965 1.02638 0.96274 1.20856 0.88444 0.97804 0.98664 1.22949 0.98334 0.98337 0.97024 1.22834 0.97519 0.97335 1.00387 1.22967 0.98399 0.95697 0.99670 1.23302 0.87401 1.04187 1.02073 1.73150 1.26069 1.10977 1.01203 1.45523 1.05017 1.35768 1.19613 1.22222 0.86414 1.00649 0.96211 0.93630 0.92712 0.92676 0.93265 0.93998 0.93770 0.96426 0.94717 0.91132 0.91115 0.75971 0.88836 0.89893 0.91371 0.91342 0.90141 0.91214 0.89774 0.80058 0.89185 0.88797 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.16 37.16 0.34 -1.66 16 2 C -0.11 -1.89 3.02 -88.78 -0.27 -2.16 16 3 H 0.07 1.13 8.04 -51.93 -0.42 0.72 16 4 C 0.18 4.25 4.97 -3.07 -0.02 4.24 16 5 N -0.61 -14.84 3.39 -170.08 -0.58 -15.41 16 6 C -0.23 -6.22 10.28 -15.05 -0.15 -6.38 16 7 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 9 N -0.92 -26.51 10.31 55.49 0.57 -25.93 16 10 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.14 2.70 6.65 -2.53 -0.02 2.69 16 15 C -0.11 -1.76 2.49 -88.47 -0.22 -1.98 16 16 H 0.08 1.27 8.05 -51.92 -0.42 0.85 16 17 C 0.13 1.75 5.14 -4.04 -0.02 1.73 16 18 N -0.71 -8.67 5.50 -61.46 -0.34 -9.01 16 19 C 0.59 7.99 6.68 -12.63 -0.08 7.91 16 20 O -0.52 -8.80 17.12 5.25 0.09 -8.71 16 21 C -0.03 -0.33 6.71 -82.06 -0.55 -0.88 16 22 C -0.14 -1.61 5.49 -104.03 -0.57 -2.18 16 23 C -0.04 -0.37 4.11 -90.96 -0.37 -0.74 16 24 C -0.13 -1.09 7.62 -25.92 -0.20 -1.29 16 25 C -0.14 -1.01 8.08 -25.91 -0.21 -1.22 16 26 C -0.13 -1.01 7.58 -25.92 -0.20 -1.20 16 27 C 0.01 0.08 11.25 -17.43 -0.20 -0.11 16 28 N -0.28 -3.45 11.90 30.59 0.36 -3.08 16 29 N -0.27 -3.20 3.75 -63.88 -0.24 -3.44 16 30 C 0.09 0.74 11.21 59.85 0.67 1.41 16 31 H 0.04 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.85 8.06 -51.93 -0.42 0.43 16 34 H 0.05 1.27 7.01 -51.93 -0.36 0.90 16 35 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 36 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.02 0.34 7.91 -51.93 -0.41 -0.07 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.07 0.99 7.96 -51.93 -0.41 0.58 16 41 H 0.41 4.51 8.46 -40.82 -0.35 4.17 16 42 H 0.09 1.00 7.94 -51.93 -0.41 0.58 16 43 H 0.08 0.67 8.03 -51.93 -0.42 0.25 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.59 7.19 -51.93 -0.37 0.21 16 49 H 0.18 1.40 7.68 -52.49 -0.40 0.99 16 50 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 51 H 0.09 0.81 7.67 -51.93 -0.40 0.41 16 52 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 417.74 15.07 6.30 6.30 Total: -1.00 -32.73 417.74 -9.97 -42.70 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -8.95 Total: 2.03 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.16 Total: -2.15 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.22 Total: -56.88 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.73 -9.97 -42.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092621459.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.718 kcal (2) G-P(sol) polarization free energy of solvation -32.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds