Wall clock time and date at job start Wed Apr 1 2020 05:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.63740 * 2 1 4 4 C 1.54324 * 110.72121 * 236.65898 * 2 1 3 5 5 N 1.47013 * 107.27055 * 219.44108 * 4 2 1 6 6 C 1.36945 * 125.64845 * 178.92001 * 5 4 2 7 7 H 1.07995 * 119.99867 * 180.02562 * 6 5 4 8 8 C 1.38815 * 119.99808 * 0.02562 * 6 5 4 9 9 N 1.31618 * 119.99812 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99984 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46949 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47286 * 120.00408 * 10 8 6 13 13 H 1.48505 * 109.47080 * 240.00371 * 10 8 6 14 14 C 1.47423 * 108.70749 * 358.94539 * 5 4 2 15 15 C 1.54906 * 104.83170 * 24.12163 * 14 5 4 16 16 H 1.09012 * 111.03590 * 81.08343 * 15 14 5 17 17 C 1.53001 * 111.00840 * 204.91866 * 15 14 5 18 18 N 1.46505 * 109.46850 * 287.20014 * 17 15 14 19 19 C 1.34780 * 119.99540 * 179.97438 * 18 17 15 20 20 O 1.21626 * 120.00047 * 5.29192 * 19 18 17 21 21 C 1.47169 * 119.99812 * 185.28928 * 19 18 17 22 22 C 1.38404 * 126.88172 * 266.97459 * 21 19 18 23 23 C 1.50696 * 127.32325 * 359.97438 * 22 21 19 24 24 C 1.53776 * 113.61679 * 239.71230 * 23 22 21 25 25 C 1.53784 * 87.08332 * 220.01920 * 24 23 22 26 26 C 1.53779 * 113.61411 * 142.21056 * 23 22 21 27 27 C 1.39674 * 105.35489 * 179.74029 * 22 21 19 28 28 N 1.30867 * 107.86395 * 0.25498 * 27 22 21 29 29 N 1.28442 * 110.92687 * 0.02562 * 28 27 22 30 30 C 1.46497 * 125.19165 * 179.97438 * 29 28 27 31 31 H 1.09001 * 109.47120 * 296.85738 * 1 2 3 32 32 H 1.08999 * 109.47098 * 56.86176 * 1 2 3 33 33 H 1.09004 * 109.46853 * 176.86153 * 1 2 3 34 34 H 1.09001 * 109.88314 * 338.86696 * 4 2 1 35 35 H 1.09004 * 109.87814 * 99.87166 * 4 2 1 36 36 H 0.96997 * 120.00211 * 179.97438 * 9 8 6 37 37 H 1.09004 * 110.36590 * 265.28524 * 14 5 4 38 38 H 1.08994 * 110.37036 * 142.96561 * 14 5 4 39 39 H 1.08998 * 109.47169 * 167.20149 * 17 15 14 40 40 H 1.08999 * 109.47027 * 47.19474 * 17 15 14 41 41 H 0.96996 * 119.99958 * 359.97438 * 18 17 15 42 42 H 1.08999 * 112.90719 * 10.96836 * 23 22 21 43 43 H 1.08999 * 113.61108 * 334.56448 * 24 23 22 44 44 H 1.08998 * 113.61448 * 105.47272 * 24 23 22 45 45 H 1.08999 * 113.61443 * 139.97982 * 25 24 23 46 46 H 1.08995 * 113.61662 * 270.88888 * 25 24 23 47 47 H 1.08999 * 113.62140 * 254.53436 * 26 23 22 48 48 H 1.09003 * 113.61420 * 25.43517 * 26 23 22 49 49 H 1.08002 * 126.07220 * 180.26489 * 27 22 21 50 50 H 1.08999 * 109.47206 * 85.23710 * 30 29 28 51 51 H 1.09001 * 109.46978 * 205.23844 * 30 29 28 52 52 H 1.08999 * 109.46996 * 325.23844 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7933 -1.2058 5 7 3.2445 -1.5519 -0.7362 6 6 4.0037 -2.4004 -1.4973 7 1 4.8457 -2.9135 -1.0568 8 6 3.6910 -2.6007 -2.8348 9 7 2.6651 -1.9749 -3.3716 10 14 4.7261 -3.7586 -3.8727 11 1 5.8122 -4.3335 -3.0390 12 1 3.8705 -4.8543 -4.3946 13 1 5.3183 -3.0087 -5.0095 14 6 3.4633 -1.2485 0.6897 15 6 2.0790 -0.7932 1.2152 16 1 1.4448 -1.6507 1.4409 17 6 2.2278 0.1123 2.4394 18 7 2.6328 -0.6917 3.5952 19 6 2.8259 -0.1021 4.7917 20 8 2.5716 1.0784 4.9361 21 6 3.3445 -0.8869 5.9236 22 6 2.6012 -1.5411 6.8906 23 6 1.0997 -1.5985 7.0053 24 6 0.5601 -1.0211 8.3245 25 6 -0.4450 -2.1850 8.3316 26 6 0.5696 -2.9629 7.4769 27 6 3.5385 -2.1412 7.7345 28 7 4.7312 -1.8457 7.2843 29 7 4.6559 -1.1127 6.2323 30 6 5.8014 -0.6022 5.4751 31 1 -0.3633 0.4643 0.9168 32 1 -0.3633 0.5618 -0.8605 33 1 -0.3633 -1.0262 -0.0563 34 1 1.3130 -1.4786 -1.5750 35 1 2.3716 -0.1060 -1.9986 36 1 2.4467 -2.1146 -4.3063 37 1 4.1932 -0.4464 0.7993 38 1 3.7960 -2.1404 1.2207 39 1 1.2748 0.5975 2.6504 40 1 2.9854 0.8704 2.2407 41 1 2.7621 -1.6482 3.4993 42 1 0.5916 -1.2149 6.1206 43 1 1.2780 -1.0593 9.1438 44 1 0.0937 -0.0422 8.2143 45 1 -0.6059 -2.6169 9.3194 46 1 -1.3753 -1.9617 7.8094 47 1 0.1109 -3.5515 6.6824 48 1 1.2902 -3.5319 8.0645 49 1 3.3182 -2.7427 8.6040 50 1 6.1267 -1.3548 4.7569 51 1 5.5113 0.3048 4.9447 52 1 6.6185 -0.3767 6.1604 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092621459.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:54 Heat of formation + Delta-G solvation = 59.420734 kcal Electronic energy + Delta-G solvation = -30947.425265 eV Core-core repulsion = 26948.873824 eV Total energy + Delta-G solvation = -3998.551442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.57946 -40.74947 -39.53309 -39.44397 -36.14262 -34.72488 -34.28525 -32.55323 -32.37946 -30.65911 -28.45952 -27.83703 -26.79820 -26.39264 -26.15791 -24.81376 -23.45514 -22.32175 -21.66002 -21.42386 -20.54197 -19.93206 -19.14638 -18.70138 -17.64017 -17.18729 -16.75290 -16.66396 -16.53296 -16.18556 -15.89884 -15.64201 -15.40619 -15.17608 -14.77204 -14.43719 -14.23319 -14.15718 -13.95392 -13.75818 -13.46013 -13.44823 -13.27754 -13.23935 -13.12552 -13.06512 -12.86812 -12.70604 -12.42329 -11.94732 -11.87613 -11.84467 -11.66006 -11.55136 -11.44063 -11.39167 -11.30004 -11.17937 -11.11144 -10.71315 -10.24747 -10.19061 -9.64050 -8.89089 -7.84977 -5.20259 0.60426 0.99051 1.45535 1.45781 1.55975 1.64671 1.69586 2.11771 2.48656 3.33167 3.44292 3.49654 3.59354 3.75410 3.79430 3.91563 3.91833 3.94223 3.96733 4.14551 4.22522 4.23958 4.30159 4.35412 4.47789 4.50930 4.53777 4.59204 4.69887 4.73272 4.77901 4.84134 4.91079 4.95076 4.95470 5.02494 5.07471 5.12380 5.16621 5.19057 5.25428 5.36373 5.41630 5.44887 5.47698 5.52092 5.66252 5.72495 5.74586 5.82471 6.20595 6.28596 6.91749 7.04048 7.10871 7.78525 8.42541 9.25263 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012683 B = 0.002549 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.164170 B =10982.364410 C =11704.641491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.077 0.923 4 C 0.192 3.808 5 N -0.629 5.629 6 C -0.239 4.239 7 H 0.082 0.918 8 C -0.067 4.067 9 N -0.950 5.950 10 Si 0.975 3.025 11 H -0.265 1.265 12 H -0.293 1.293 13 H -0.294 1.294 14 C 0.138 3.862 15 C -0.091 4.091 16 H 0.088 0.912 17 C 0.143 3.857 18 N -0.699 5.699 19 C 0.600 3.400 20 O -0.559 6.559 21 C -0.050 4.050 22 C -0.142 4.142 23 C -0.048 4.048 24 C -0.129 4.129 25 C -0.135 4.135 26 C -0.124 4.124 27 C 0.007 3.993 28 N -0.299 5.299 29 N -0.276 5.276 30 C 0.078 3.922 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.015 0.985 35 H 0.000 1.000 36 H 0.246 0.754 37 H 0.022 0.978 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.413 0.587 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.095 0.905 49 H 0.210 0.790 50 H 0.101 0.899 51 H 0.091 0.909 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 0.640 24.102 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.119 4.119 3 H 0.095 0.905 4 C 0.066 3.934 5 N -0.355 5.355 6 C -0.368 4.368 7 H 0.100 0.900 8 C -0.260 4.260 9 N -0.599 5.599 10 Si 0.804 3.196 11 H -0.189 1.189 12 H -0.220 1.220 13 H -0.222 1.222 14 C 0.013 3.987 15 C -0.110 4.110 16 H 0.106 0.894 17 C 0.020 3.980 18 N -0.350 5.350 19 C 0.383 3.617 20 O -0.437 6.437 21 C -0.178 4.178 22 C -0.153 4.153 23 C -0.067 4.067 24 C -0.167 4.167 25 C -0.172 4.172 26 C -0.161 4.161 27 C -0.169 4.169 28 N -0.130 5.130 29 N -0.064 5.064 30 C -0.061 4.061 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.033 0.967 35 H 0.018 0.982 36 H 0.055 0.945 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.249 0.751 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.088 0.912 48 H 0.113 0.887 49 H 0.226 0.774 50 H 0.119 0.881 51 H 0.109 0.891 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.814 1.324 24.080 24.185 hybrid contribution -0.046 -0.667 -1.608 1.742 sum -1.860 0.657 22.472 22.558 Atomic orbital electron populations 1.21652 0.93051 1.01638 1.02243 1.22308 0.96939 0.98645 0.94051 0.90450 1.20978 0.88086 0.91956 0.92334 1.44785 1.32660 1.51132 1.06913 1.19475 1.07817 1.17594 0.91933 0.89973 1.25627 0.99833 1.02255 0.98274 1.70190 1.30374 1.47010 1.12345 0.85053 0.78017 0.77989 0.78544 1.18933 1.21978 1.22154 1.21765 0.95061 0.97488 0.84394 1.22474 0.97167 0.98310 0.93080 0.89372 1.21312 1.01087 0.93011 0.82594 1.45974 1.68075 1.12820 1.08088 1.17055 0.77561 0.85501 0.81577 1.90829 1.52446 1.16834 1.83556 1.21367 0.86426 1.08406 1.01632 1.20768 0.96800 1.01921 0.95778 1.20951 0.87457 0.99535 0.98780 1.22967 0.98820 0.98461 0.96437 1.22802 0.97078 0.96287 1.01059 1.22970 0.98604 0.94750 0.99792 1.23769 0.86693 1.03929 1.02542 1.73139 1.26888 1.11448 1.01515 1.45764 1.05254 1.35714 1.19669 1.22429 0.86159 1.00823 0.96698 0.90492 0.92752 0.93399 0.96653 0.98192 0.94502 0.96034 0.93682 0.90102 0.91357 0.75101 0.90184 0.89349 0.92202 0.89889 0.90015 0.91194 0.88669 0.77369 0.88080 0.89079 0.86802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 9.16 71.98 0.66 -2.97 16 2 C -0.10 -3.36 3.02 -9.60 -0.03 -3.39 16 3 H 0.08 2.49 8.04 -2.39 -0.02 2.47 16 4 C 0.19 9.15 4.97 86.73 0.43 9.59 16 5 N -0.63 -31.17 3.39 -692.01 -2.35 -33.52 16 6 C -0.24 -13.11 10.28 84.03 0.86 -12.25 16 7 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 8 C -0.07 -3.77 5.49 84.86 0.47 -3.30 16 9 N -0.95 -56.73 10.31 21.65 0.22 -56.50 16 10 Si 0.98 45.31 29.55 68.60 2.03 47.34 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 13 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 14 C 0.14 5.11 6.65 86.85 0.58 5.69 16 15 C -0.09 -2.67 2.49 -9.40 -0.02 -2.70 16 16 H 0.09 2.55 8.05 -2.38 -0.02 2.53 16 17 C 0.14 3.53 5.14 86.38 0.44 3.97 16 18 N -0.70 -15.87 5.50 -466.61 -2.56 -18.43 16 19 C 0.60 15.57 6.68 86.59 0.58 16.14 16 20 O -0.56 -18.34 17.12 -4.11 -0.07 -18.41 16 21 C -0.05 -1.19 6.71 40.79 0.27 -0.92 16 22 C -0.14 -2.98 5.49 -19.48 -0.11 -3.09 16 23 C -0.05 -0.85 4.11 -11.02 -0.05 -0.89 16 24 C -0.13 -1.96 7.62 31.12 0.24 -1.72 16 25 C -0.13 -1.59 8.08 31.12 0.25 -1.34 16 26 C -0.12 -1.62 7.58 31.12 0.24 -1.39 16 27 C 0.01 0.14 11.25 85.18 0.96 1.10 16 28 N -0.30 -6.77 11.90 -57.14 -0.68 -7.45 16 29 N -0.28 -6.14 3.75 -356.02 -1.33 -7.47 16 30 C 0.08 1.26 11.21 127.77 1.43 2.70 16 31 H 0.08 1.72 8.10 -2.39 -0.02 1.70 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.05 1.42 8.06 -2.38 -0.02 1.40 16 34 H 0.02 0.82 7.01 -2.39 -0.02 0.81 16 35 H 0.00 -0.01 7.50 -2.39 -0.02 -0.03 16 36 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 37 H 0.02 0.81 7.91 -2.38 -0.02 0.79 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.92 8.10 -2.39 -0.02 1.90 16 40 H 0.07 1.78 7.96 -2.39 -0.02 1.76 16 41 H 0.41 8.38 8.46 -92.71 -0.78 7.60 16 42 H 0.08 1.63 7.94 -2.39 -0.02 1.61 16 43 H 0.09 1.24 8.03 -2.39 -0.02 1.22 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.09 1.04 7.19 -2.39 -0.02 1.02 16 49 H 0.21 2.59 7.68 -2.91 -0.02 2.56 16 50 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.09 1.50 7.67 -2.39 -0.02 1.48 16 52 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -72.52 417.74 2.58 -69.94 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.12 Total: 19.27 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 7.20 Total: 5.24 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -6.70 Total: -123.38 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.07 Total: -18.41 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -72.52 2.58 -69.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092621459.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.360 kcal (2) G-P(sol) polarization free energy of solvation -72.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds