Wall clock time and date at job start Wed Apr 1 2020 04:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.88255 * 2 1 4 4 C 1.54906 * 111.00277 * 236.11789 * 2 1 3 5 5 N 1.47429 * 104.83193 * 204.87497 * 4 2 1 6 6 C 1.36928 * 125.65227 * 204.09592 * 5 4 2 7 7 H 1.07999 * 120.00565 * 163.18332 * 6 5 4 8 8 C 1.38811 * 119.99895 * 343.17417 * 6 5 4 9 9 N 1.31620 * 120.00366 * 331.90976 * 8 6 5 10 10 Si 1.86803 * 120.00070 * 151.90412 * 8 6 5 11 11 H 1.48505 * 109.47149 * 270.00560 * 10 8 6 12 12 H 1.48491 * 109.47391 * 150.00538 * 10 8 6 13 13 H 1.48507 * 109.47042 * 30.00175 * 10 8 6 14 14 C 1.47029 * 108.69998 * 24.35861 * 5 4 2 15 15 C 1.54342 * 107.26505 * 358.58438 * 14 5 4 16 16 H 1.09000 * 110.66491 * 96.51965 * 15 14 5 17 17 C 1.52997 * 110.84993 * 219.67502 * 15 14 5 18 18 C 1.53001 * 109.46840 * 288.69254 * 17 15 14 19 19 N 1.46505 * 109.47095 * 179.97438 * 18 17 15 20 20 C 1.34775 * 120.00043 * 179.97438 * 19 18 17 21 21 O 1.21281 * 119.99946 * 359.97438 * 20 19 18 22 22 C 1.50696 * 120.00125 * 179.97438 * 20 19 18 23 23 H 1.08995 * 109.71669 * 299.39402 * 22 20 19 24 24 C 1.53386 * 109.71995 * 178.73451 * 22 20 19 25 25 C 1.53022 * 109.72499 * 189.79089 * 24 22 20 26 26 C 1.53374 * 109.74825 * 71.72502 * 25 24 22 27 27 C 1.50947 * 108.20791 * 309.35780 * 26 25 24 28 28 N 1.30120 * 128.28615 * 196.82308 * 27 26 25 29 29 N 1.40312 * 108.12615 * 179.69713 * 28 27 26 30 30 H 0.96996 * 126.00682 * 180.02562 * 29 28 27 31 31 C 1.35197 * 107.98989 * 0.04969 * 29 28 27 32 32 C 1.34572 * 107.61806 * 0.03103 * 31 29 28 33 33 H 1.09003 * 109.47065 * 182.42717 * 1 2 3 34 34 H 1.08995 * 109.47504 * 302.43138 * 1 2 3 35 35 H 1.09006 * 109.47357 * 62.43086 * 1 2 3 36 36 H 1.09004 * 110.36404 * 86.04301 * 4 2 1 37 37 H 1.08999 * 110.46258 * 323.76403 * 4 2 1 38 38 H 0.96997 * 119.99663 * 353.96004 * 9 8 6 39 39 H 1.09004 * 109.88264 * 118.12769 * 14 5 4 40 40 H 1.08994 * 109.88345 * 239.29830 * 14 5 4 41 41 H 1.08999 * 109.47363 * 48.68698 * 17 15 14 42 42 H 1.08992 * 109.47299 * 168.69219 * 17 15 14 43 43 H 1.08998 * 109.47405 * 300.00059 * 18 17 15 44 44 H 1.09001 * 109.47274 * 59.99775 * 18 17 15 45 45 H 0.96996 * 120.00044 * 0.02562 * 19 18 17 46 46 H 1.08997 * 109.43154 * 309.86865 * 24 22 20 47 47 H 1.09004 * 109.42660 * 69.71222 * 24 22 20 48 48 H 1.09008 * 109.41679 * 311.64464 * 25 24 22 49 49 H 1.08999 * 109.38189 * 191.79177 * 25 24 22 50 50 H 1.08996 * 109.70943 * 189.67868 * 26 25 24 51 51 H 1.09001 * 109.75014 * 69.06065 * 26 25 24 52 52 H 1.08005 * 126.19229 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0185 0.0000 4 6 2.0852 -0.8062 -1.2006 5 7 3.4275 -1.2420 -0.7741 6 6 4.4643 -1.5649 -1.6083 7 1 5.4728 -1.6088 -1.2244 8 6 4.2190 -1.8360 -2.9474 9 7 3.0538 -2.3234 -3.3176 10 14 5.5427 -1.5089 -4.2243 11 1 5.4046 -0.1217 -4.7363 12 1 5.3945 -2.4682 -5.3479 13 1 6.8814 -1.6764 -3.6036 14 6 3.4667 -1.2784 0.6952 15 6 2.0869 -0.8077 1.2020 16 1 1.4464 -1.6616 1.4227 17 6 2.2356 0.0878 2.4336 18 6 2.6666 -0.7605 3.6317 19 7 2.8097 0.0971 4.8110 20 6 3.1834 -0.4364 5.9908 21 8 3.4009 -1.6265 6.0765 22 6 3.3311 0.4457 7.2037 23 1 4.0923 1.2032 7.0169 24 6 3.7318 -0.4041 8.4161 25 6 3.6451 0.4398 9.6896 26 6 2.1747 0.6997 10.0400 27 6 1.4821 1.2269 8.8067 28 7 0.3410 1.8469 8.7259 29 7 0.1050 2.1527 7.3770 30 1 -0.6716 2.6148 7.0244 31 6 1.1500 1.6898 6.6548 32 6 2.0133 1.1132 7.5112 33 1 -0.3633 -1.0268 0.0435 34 1 -0.3634 0.5511 0.8673 35 1 -0.3634 0.4756 -0.9110 36 1 2.1553 -0.1714 -2.0839 37 1 1.4528 -1.6703 -1.4045 38 1 2.3987 -2.5754 -2.6481 39 1 3.6616 -2.2954 1.0357 40 1 4.2430 -0.6071 1.0621 41 1 2.9891 0.8510 2.2390 42 1 1.2812 0.5667 2.6520 43 1 1.9133 -1.5238 3.8264 44 1 3.6211 -1.2395 3.4133 45 1 2.6347 1.0487 4.7427 46 1 3.0581 -1.2569 8.4997 47 1 4.7534 -0.7615 8.2867 48 1 4.1533 1.3908 9.5294 49 1 4.1246 -0.0937 10.5103 50 1 2.1124 1.4371 10.8403 51 1 1.7021 -0.2294 10.3584 52 1 1.2703 1.7685 5.5844 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102987948.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:08 Heat of formation + Delta-G solvation = 36.053993 kcal Electronic energy + Delta-G solvation = -30522.526618 eV Core-core repulsion = 26522.961919 eV Total energy + Delta-G solvation = -3999.564699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.02511 -39.81186 -38.41829 -36.71919 -35.34182 -33.57590 -32.80222 -31.35520 -30.83006 -30.52933 -29.01062 -26.97883 -25.88927 -25.21673 -23.97506 -22.41833 -22.07873 -21.56980 -20.69944 -19.80514 -19.44474 -19.18572 -18.08797 -17.41714 -17.11370 -16.02097 -15.86723 -15.44207 -15.38359 -14.99117 -14.60962 -14.34540 -14.04165 -13.77109 -13.69691 -13.47271 -13.39444 -13.25834 -13.03957 -12.83922 -12.44765 -12.29790 -12.20182 -11.83921 -11.70155 -11.62069 -11.40049 -11.26678 -11.20264 -11.05733 -10.80616 -10.70410 -10.47707 -10.21957 -10.13432 -10.04543 -9.93298 -9.79432 -9.78589 -9.45802 -9.16269 -8.84167 -8.37682 -6.90352 -6.07154 -3.11454 1.47070 2.20690 2.40712 2.62107 3.06770 3.52424 3.54358 3.71138 4.01277 4.28329 4.40660 4.49670 4.60745 4.61394 4.79541 4.90604 4.97119 5.02426 5.07614 5.12030 5.12078 5.20440 5.23263 5.34862 5.40676 5.47431 5.54621 5.55155 5.60066 5.66325 5.73440 5.79262 5.80633 5.87180 5.96145 6.04972 6.05928 6.11940 6.17997 6.20070 6.25320 6.34817 6.39869 6.52137 6.67052 6.85503 6.88188 7.01831 7.10730 7.25962 7.32616 7.83843 8.09412 8.52106 9.05963 9.84705 10.41153 11.25317 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.002053 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.324241 B =13637.708057 C =14626.243091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 H 0.072 0.928 4 C 0.151 3.849 5 N -0.604 5.604 6 C -0.335 4.335 7 H 0.064 0.936 8 C -0.027 4.027 9 N -0.918 5.918 10 Si 1.067 2.933 11 H -0.294 1.294 12 H -0.290 1.290 13 H -0.292 1.292 14 C 0.139 3.861 15 C -0.092 4.092 16 H 0.074 0.926 17 C -0.116 4.116 18 C 0.116 3.884 19 N -0.731 5.731 20 C 0.520 3.480 21 O -0.534 6.534 22 C -0.027 4.027 23 H 0.104 0.896 24 C -0.100 4.100 25 C -0.115 4.115 26 C -0.041 4.041 27 C 0.092 3.908 28 N -0.287 5.287 29 N -0.480 5.480 30 H 0.441 0.559 31 C 0.068 3.932 32 C -0.232 4.232 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.026 0.974 38 H 0.269 0.731 39 H 0.021 0.979 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.394 0.606 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.077 0.923 50 H 0.083 0.917 51 H 0.086 0.914 52 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.845 11.488 25.147 28.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 H 0.090 0.910 4 C 0.025 3.975 5 N -0.331 5.331 6 C -0.463 4.463 7 H 0.082 0.918 8 C -0.229 4.229 9 N -0.559 5.559 10 Si 0.897 3.103 11 H -0.221 1.221 12 H -0.216 1.216 13 H -0.219 1.219 14 C 0.014 3.986 15 C -0.111 4.111 16 H 0.093 0.907 17 C -0.154 4.154 18 C -0.007 4.007 19 N -0.384 5.384 20 C 0.306 3.694 21 O -0.409 6.409 22 C -0.049 4.049 23 H 0.121 0.879 24 C -0.138 4.138 25 C -0.153 4.153 26 C -0.080 4.080 27 C -0.077 4.077 28 N -0.109 5.109 29 N -0.188 5.188 30 H 0.286 0.714 31 C -0.079 4.079 32 C -0.244 4.244 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.080 0.920 39 H 0.039 0.961 40 H 0.042 0.958 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.229 0.771 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.087 0.913 49 H 0.096 0.904 50 H 0.102 0.898 51 H 0.104 0.896 52 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.246 11.003 24.137 27.041 hybrid contribution -0.223 0.428 0.667 0.823 sum -5.469 11.431 24.804 27.853 Atomic orbital electron populations 1.21672 0.95375 1.01508 1.00818 1.22425 0.94544 0.99146 0.96369 0.90985 1.21561 0.86719 0.95085 0.94140 1.44565 1.10533 1.78186 0.99821 1.19779 0.86700 1.47318 0.92494 0.91775 1.25734 1.02082 0.97853 0.97198 1.70746 1.08858 1.38665 1.37657 0.83490 0.74458 0.76493 0.75899 1.22133 1.21650 1.21894 1.21398 0.93435 0.97446 0.86353 1.22143 0.98315 0.97552 0.93134 0.90749 1.21775 1.01337 0.98496 0.93786 1.21494 1.02367 0.93314 0.83482 1.46226 1.70527 1.11814 1.09835 1.20535 0.76107 0.88731 0.84041 1.90720 1.49403 1.15853 1.84967 1.19758 0.94459 0.96831 0.93853 0.87865 1.21407 1.02858 0.97837 0.91697 1.21591 0.95050 1.00752 0.97923 1.20187 0.94487 1.01163 0.92205 1.22345 0.92299 0.97028 0.96020 1.77038 1.17824 1.20692 0.95326 1.46314 1.19377 1.48242 1.04860 0.71448 1.22124 0.89334 0.98220 0.98200 1.19666 1.00133 1.11581 0.92988 0.92788 0.93445 0.92763 0.93380 0.95672 0.91999 0.96073 0.95766 0.91122 0.91739 0.91495 0.90869 0.77074 0.90529 0.90608 0.91318 0.90426 0.89806 0.89566 0.80919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.30 37.16 0.35 -1.54 16 2 C -0.11 -1.78 3.09 -88.47 -0.27 -2.05 16 3 H 0.07 1.19 8.05 -51.93 -0.42 0.78 16 4 C 0.15 3.47 4.77 -2.53 -0.01 3.46 16 5 N -0.60 -15.47 3.29 -170.06 -0.56 -16.03 16 6 C -0.34 -9.63 10.02 -15.06 -0.15 -9.78 16 7 H 0.06 1.85 7.97 -52.49 -0.42 1.43 16 8 C -0.03 -0.79 5.08 -17.43 -0.09 -0.88 16 9 N -0.92 -28.08 12.93 55.49 0.72 -27.36 16 10 Si 1.07 25.75 30.00 -169.99 -5.10 20.65 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 14 C 0.14 2.89 6.25 -3.05 -0.02 2.87 16 15 C -0.09 -1.46 2.39 -88.78 -0.21 -1.67 16 16 H 0.07 1.18 8.01 -51.93 -0.42 0.77 16 17 C -0.12 -1.34 4.73 -26.73 -0.13 -1.47 16 18 C 0.12 1.40 5.56 -4.04 -0.02 1.38 16 19 N -0.73 -7.11 4.97 -60.29 -0.30 -7.41 16 20 C 0.52 5.99 7.09 -10.99 -0.08 5.92 16 21 O -0.53 -8.42 15.86 5.56 0.09 -8.33 16 22 C -0.03 -0.23 2.90 -92.63 -0.27 -0.50 16 23 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 24 C -0.10 -0.82 4.61 -26.52 -0.12 -0.94 16 25 C -0.12 -0.68 5.86 -26.53 -0.16 -0.83 16 26 C -0.04 -0.28 6.31 -27.57 -0.17 -0.45 16 27 C 0.09 0.85 7.10 -82.35 -0.58 0.27 16 28 N -0.29 -2.90 12.68 33.75 0.43 -2.47 16 29 N -0.48 -3.61 7.37 30.35 0.22 -3.38 16 30 H 0.44 1.97 8.96 -182.44 -1.64 0.34 16 31 C 0.07 0.49 10.99 -17.37 -0.19 0.30 16 32 C -0.23 -2.01 5.41 -104.98 -0.57 -2.58 16 33 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 1.22 7.95 -51.93 -0.41 0.81 16 37 H 0.03 0.63 6.70 -51.93 -0.35 0.28 16 38 H 0.27 8.24 6.06 -40.82 -0.25 7.99 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.02 0.50 7.69 -51.93 -0.40 0.10 16 41 H 0.07 0.82 7.94 -51.93 -0.41 0.41 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.04 7.68 -51.93 -0.40 0.64 16 45 H 0.39 2.65 6.14 -40.82 -0.25 2.40 16 46 H 0.08 0.77 7.77 -51.93 -0.40 0.36 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.37 8.10 -51.92 -0.42 -0.05 16 49 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 52 H 0.17 0.81 5.93 -52.48 -0.31 0.50 16 LS Contribution 404.37 15.07 6.09 6.09 Total: -1.00 -36.37 404.37 -11.05 -47.41 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -9.94 Total: -0.68 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -2.70 Total: -8.50 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.51 Total: -56.65 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.10 Total: 20.65 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.37 -11.05 -47.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102987948.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.467 kcal (2) G-P(sol) polarization free energy of solvation -36.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds