Wall clock time and date at job start Wed Apr 1 2020 04:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.88255 * 2 1 4 4 C 1.54906 * 111.00277 * 236.11789 * 2 1 3 5 5 N 1.47429 * 104.83193 * 204.87497 * 4 2 1 6 6 C 1.36928 * 125.65227 * 204.09592 * 5 4 2 7 7 H 1.07999 * 120.00565 * 163.18332 * 6 5 4 8 8 C 1.38811 * 119.99895 * 343.17417 * 6 5 4 9 9 N 1.31620 * 120.00366 * 331.90976 * 8 6 5 10 10 Si 1.86803 * 120.00070 * 151.90412 * 8 6 5 11 11 H 1.48505 * 109.47149 * 270.00560 * 10 8 6 12 12 H 1.48491 * 109.47391 * 150.00538 * 10 8 6 13 13 H 1.48507 * 109.47042 * 30.00175 * 10 8 6 14 14 C 1.47029 * 108.69998 * 24.35861 * 5 4 2 15 15 C 1.54342 * 107.26505 * 358.58438 * 14 5 4 16 16 H 1.09000 * 110.66491 * 96.51965 * 15 14 5 17 17 C 1.52997 * 110.84993 * 219.67502 * 15 14 5 18 18 C 1.53001 * 109.46840 * 288.69254 * 17 15 14 19 19 N 1.46505 * 109.47095 * 179.97438 * 18 17 15 20 20 C 1.34775 * 120.00043 * 179.97438 * 19 18 17 21 21 O 1.21281 * 119.99946 * 359.97438 * 20 19 18 22 22 C 1.50696 * 120.00125 * 179.97438 * 20 19 18 23 23 H 1.08995 * 109.71669 * 299.39402 * 22 20 19 24 24 C 1.53386 * 109.71995 * 178.73451 * 22 20 19 25 25 C 1.53022 * 109.72499 * 189.79089 * 24 22 20 26 26 C 1.53374 * 109.74825 * 71.72502 * 25 24 22 27 27 C 1.50947 * 108.20791 * 309.35780 * 26 25 24 28 28 N 1.30120 * 128.28615 * 196.82308 * 27 26 25 29 29 N 1.40312 * 108.12615 * 179.69713 * 28 27 26 30 30 H 0.96996 * 126.00682 * 180.02562 * 29 28 27 31 31 C 1.35197 * 107.98989 * 0.04969 * 29 28 27 32 32 C 1.34572 * 107.61806 * 0.03103 * 31 29 28 33 33 H 1.09003 * 109.47065 * 182.42717 * 1 2 3 34 34 H 1.08995 * 109.47504 * 302.43138 * 1 2 3 35 35 H 1.09006 * 109.47357 * 62.43086 * 1 2 3 36 36 H 1.09004 * 110.36404 * 86.04301 * 4 2 1 37 37 H 1.08999 * 110.46258 * 323.76403 * 4 2 1 38 38 H 0.96997 * 119.99663 * 353.96004 * 9 8 6 39 39 H 1.09004 * 109.88264 * 118.12769 * 14 5 4 40 40 H 1.08994 * 109.88345 * 239.29830 * 14 5 4 41 41 H 1.08999 * 109.47363 * 48.68698 * 17 15 14 42 42 H 1.08992 * 109.47299 * 168.69219 * 17 15 14 43 43 H 1.08998 * 109.47405 * 300.00059 * 18 17 15 44 44 H 1.09001 * 109.47274 * 59.99775 * 18 17 15 45 45 H 0.96996 * 120.00044 * 0.02562 * 19 18 17 46 46 H 1.08997 * 109.43154 * 309.86865 * 24 22 20 47 47 H 1.09004 * 109.42660 * 69.71222 * 24 22 20 48 48 H 1.09008 * 109.41679 * 311.64464 * 25 24 22 49 49 H 1.08999 * 109.38189 * 191.79177 * 25 24 22 50 50 H 1.08996 * 109.70943 * 189.67868 * 26 25 24 51 51 H 1.09001 * 109.75014 * 69.06065 * 26 25 24 52 52 H 1.08005 * 126.19229 * 180.02562 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0185 0.0000 4 6 2.0852 -0.8062 -1.2006 5 7 3.4275 -1.2420 -0.7741 6 6 4.4643 -1.5649 -1.6083 7 1 5.4728 -1.6088 -1.2244 8 6 4.2190 -1.8360 -2.9474 9 7 3.0538 -2.3234 -3.3176 10 14 5.5427 -1.5089 -4.2243 11 1 5.4046 -0.1217 -4.7363 12 1 5.3945 -2.4682 -5.3479 13 1 6.8814 -1.6764 -3.6036 14 6 3.4667 -1.2784 0.6952 15 6 2.0869 -0.8077 1.2020 16 1 1.4464 -1.6616 1.4227 17 6 2.2356 0.0878 2.4336 18 6 2.6666 -0.7605 3.6317 19 7 2.8097 0.0971 4.8110 20 6 3.1834 -0.4364 5.9908 21 8 3.4009 -1.6265 6.0765 22 6 3.3311 0.4457 7.2037 23 1 4.0923 1.2032 7.0169 24 6 3.7318 -0.4041 8.4161 25 6 3.6451 0.4398 9.6896 26 6 2.1747 0.6997 10.0400 27 6 1.4821 1.2269 8.8067 28 7 0.3410 1.8469 8.7259 29 7 0.1050 2.1527 7.3770 30 1 -0.6716 2.6148 7.0244 31 6 1.1500 1.6898 6.6548 32 6 2.0133 1.1132 7.5112 33 1 -0.3633 -1.0268 0.0435 34 1 -0.3634 0.5511 0.8673 35 1 -0.3634 0.4756 -0.9110 36 1 2.1553 -0.1714 -2.0839 37 1 1.4528 -1.6703 -1.4045 38 1 2.3987 -2.5754 -2.6481 39 1 3.6616 -2.2954 1.0357 40 1 4.2430 -0.6071 1.0621 41 1 2.9891 0.8510 2.2390 42 1 1.2812 0.5667 2.6520 43 1 1.9133 -1.5238 3.8264 44 1 3.6211 -1.2395 3.4133 45 1 2.6347 1.0487 4.7427 46 1 3.0581 -1.2569 8.4997 47 1 4.7534 -0.7615 8.2867 48 1 4.1533 1.3908 9.5294 49 1 4.1246 -0.0937 10.5103 50 1 2.1124 1.4371 10.8403 51 1 1.7021 -0.2294 10.3584 52 1 1.2703 1.7685 5.5844 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102987948.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:07 Heat of formation + Delta-G solvation = 11.648647 kcal Electronic energy + Delta-G solvation = -30523.584914 eV Core-core repulsion = 26522.961919 eV Total energy + Delta-G solvation = -4000.622995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.63378 -40.73281 -39.92426 -37.37247 -36.50114 -35.24369 -33.60204 -32.54572 -32.32032 -31.40283 -29.62801 -28.38599 -27.62442 -26.11139 -25.27336 -23.67788 -22.77072 -22.36050 -21.72586 -21.29921 -20.74614 -19.76341 -19.51791 -18.70291 -17.94543 -17.04632 -16.81616 -16.48730 -16.24230 -15.90019 -15.82816 -15.61981 -15.34219 -15.18886 -14.94539 -14.65647 -14.44382 -14.19442 -13.91356 -13.87926 -13.61664 -13.38771 -13.26842 -12.98808 -12.88043 -12.65586 -12.51553 -12.42820 -12.26931 -12.19704 -12.02783 -11.91605 -11.73867 -11.71018 -11.54989 -11.46845 -11.41294 -11.24257 -10.82504 -10.53322 -10.38875 -10.09763 -9.45932 -9.03305 -8.35296 -5.36404 0.89909 1.50770 1.54873 1.63029 1.75659 1.80878 1.94670 2.25612 2.62534 3.15332 3.43091 3.53187 3.58372 3.72781 3.78222 3.82430 3.88819 3.93418 4.10751 4.18464 4.28754 4.35027 4.38034 4.47194 4.50229 4.52926 4.57593 4.60979 4.67508 4.68451 4.74864 4.84549 4.86454 4.91691 5.00231 5.03088 5.07711 5.14824 5.15998 5.18225 5.19186 5.24437 5.31865 5.38541 5.41428 5.50168 5.55846 5.62477 5.65493 6.29545 6.40675 6.53992 6.67935 6.89832 7.25838 7.69219 8.28334 8.95951 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.002053 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.324241 B =13637.708057 C =14626.243091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 H 0.085 0.915 4 C 0.151 3.849 5 N -0.629 5.629 6 C -0.348 4.348 7 H 0.056 0.944 8 C -0.081 4.081 9 N -0.945 5.945 10 Si 1.119 2.881 11 H -0.281 1.281 12 H -0.293 1.293 13 H -0.273 1.273 14 C 0.133 3.867 15 C -0.078 4.078 16 H 0.074 0.926 17 C -0.100 4.100 18 C 0.123 3.877 19 N -0.715 5.715 20 C 0.517 3.483 21 O -0.583 6.583 22 C -0.017 4.017 23 H 0.127 0.873 24 C -0.101 4.101 25 C -0.106 4.106 26 C -0.043 4.043 27 C 0.080 3.920 28 N -0.320 5.320 29 N -0.474 5.474 30 H 0.453 0.547 31 C 0.077 3.923 32 C -0.251 4.251 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.013 0.987 37 H -0.001 1.001 38 H 0.254 0.746 39 H 0.001 0.999 40 H 0.031 0.969 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.045 0.955 45 H 0.413 0.587 46 H 0.052 0.948 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.084 0.916 52 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.184 14.252 26.521 30.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 H 0.103 0.897 4 C 0.026 3.974 5 N -0.356 5.356 6 C -0.476 4.476 7 H 0.074 0.926 8 C -0.277 4.277 9 N -0.588 5.588 10 Si 0.943 3.057 11 H -0.208 1.208 12 H -0.219 1.219 13 H -0.198 1.198 14 C 0.008 3.992 15 C -0.097 4.097 16 H 0.093 0.907 17 C -0.138 4.138 18 C -0.001 4.001 19 N -0.368 5.368 20 C 0.304 3.696 21 O -0.462 6.462 22 C -0.039 4.039 23 H 0.144 0.856 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.082 4.082 27 C -0.088 4.088 28 N -0.143 5.143 29 N -0.183 5.183 30 H 0.300 0.700 31 C -0.070 4.070 32 C -0.263 4.263 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.032 0.968 37 H 0.017 0.983 38 H 0.064 0.936 39 H 0.019 0.981 40 H 0.049 0.951 41 H 0.098 0.902 42 H 0.123 0.877 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.251 0.749 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.111 0.889 50 H 0.113 0.887 51 H 0.103 0.897 52 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.611 13.826 25.549 29.587 hybrid contribution -0.117 -0.486 0.253 0.560 sum -5.728 13.340 25.802 29.606 Atomic orbital electron populations 1.21653 0.92456 1.01877 1.02796 1.22336 0.96751 0.98522 0.93157 0.89704 1.21541 0.85692 0.94369 0.95839 1.44914 1.10774 1.78142 1.01770 1.20048 0.87472 1.46621 0.93486 0.92593 1.27206 1.03437 0.97491 0.99549 1.70867 1.09705 1.41063 1.37146 0.82806 0.72790 0.76647 0.73459 1.20791 1.21919 1.19778 1.21599 0.97005 0.96671 0.83895 1.22052 0.94794 0.98279 0.94591 0.90745 1.21648 1.03802 0.97389 0.90913 1.21253 1.00667 0.93606 0.84580 1.46021 1.69635 1.12524 1.08648 1.21127 0.74982 0.88399 0.85043 1.90704 1.51610 1.18164 1.85766 1.19728 0.95316 0.96611 0.92288 0.85588 1.21401 1.01988 0.97524 0.92980 1.21548 0.94741 1.00918 0.97135 1.20286 0.94739 1.01305 0.91896 1.22733 0.92226 0.96775 0.97081 1.76987 1.18537 1.21934 0.96864 1.46364 1.19880 1.47887 1.04214 0.70020 1.22531 0.88519 0.96749 0.99241 1.19753 1.00592 1.12696 0.93248 0.93495 0.89263 0.92774 0.96820 0.98305 0.93574 0.98126 0.95140 0.90209 0.87697 0.92409 0.93686 0.74869 0.92929 0.90895 0.90281 0.88865 0.88686 0.89733 0.78144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.30 71.98 0.67 -2.54 16 2 C -0.09 -2.82 3.09 -9.40 -0.03 -2.85 16 3 H 0.08 2.54 8.05 -2.38 -0.02 2.52 16 4 C 0.15 7.15 4.77 86.85 0.41 7.56 16 5 N -0.63 -33.12 3.29 -691.94 -2.28 -35.39 16 6 C -0.35 -20.54 10.02 84.03 0.84 -19.69 16 7 H 0.06 3.31 7.97 -2.91 -0.02 3.29 16 8 C -0.08 -4.82 5.08 84.86 0.43 -4.39 16 9 N -0.94 -59.88 12.93 21.65 0.28 -59.60 16 10 Si 1.12 52.61 30.00 68.60 2.06 54.67 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 13 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 14 C 0.13 5.57 6.25 86.73 0.54 6.11 16 15 C -0.08 -2.33 2.39 -9.60 -0.02 -2.35 16 16 H 0.07 2.26 8.01 -2.39 -0.02 2.24 16 17 C -0.10 -1.93 4.73 30.59 0.14 -1.78 16 18 C 0.12 2.71 5.56 86.38 0.48 3.19 16 19 N -0.71 -11.96 4.97 -463.05 -2.30 -14.26 16 20 C 0.52 11.22 7.09 87.66 0.62 11.84 16 21 O -0.58 -18.53 15.86 -3.03 -0.05 -18.58 16 22 C -0.02 -0.26 2.90 -12.10 -0.04 -0.30 16 23 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 24 C -0.10 -1.58 4.61 30.73 0.14 -1.43 16 25 C -0.11 -1.06 5.86 30.73 0.18 -0.88 16 26 C -0.04 -0.53 6.31 30.05 0.19 -0.34 16 27 C 0.08 1.36 7.10 43.44 0.31 1.67 16 28 N -0.32 -5.97 12.68 -47.14 -0.60 -6.57 16 29 N -0.47 -5.92 7.37 -57.88 -0.43 -6.34 16 30 H 0.45 2.84 8.96 -213.19 -1.91 0.93 16 31 C 0.08 0.87 10.99 83.33 0.92 1.79 16 32 C -0.25 -3.78 5.41 -20.10 -0.11 -3.89 16 33 H 0.05 1.23 8.11 -2.39 -0.02 1.21 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.01 0.71 7.95 -2.38 -0.02 0.69 16 37 H 0.00 -0.04 6.70 -2.39 -0.02 -0.06 16 38 H 0.25 16.39 6.06 -92.71 -0.56 15.83 16 39 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.03 1.24 7.69 -2.39 -0.02 1.22 16 41 H 0.08 1.49 7.94 -2.39 -0.02 1.47 16 42 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.04 1.26 7.68 -2.39 -0.02 1.25 16 45 H 0.41 3.77 6.14 -92.71 -0.57 3.20 16 46 H 0.05 1.07 7.77 -2.39 -0.02 1.05 16 47 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 48 H 0.08 0.66 8.10 -2.38 -0.02 0.64 16 49 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.20 0.90 5.93 -2.91 -0.02 0.88 16 Total: -1.00 -84.57 404.37 1.03 -83.54 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -1.34 Total: 10.80 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 5.69 Total: -8.27 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -5.32 Total: -122.16 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.05 Total: -18.58 kcal Atomic # 14 Polarization: 52.61 SS G_CDS: 2.06 Total: 54.67 kcal Total: -84.57 1.03 -83.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102987948.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.189 kcal (2) G-P(sol) polarization free energy of solvation -84.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds