Wall clock time and date at job start Wed Apr 1 2020 04:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.88846 * 2 1 4 4 C 1.54914 * 111.00145 * 236.12048 * 2 1 3 5 5 N 1.47427 * 104.83009 * 204.87596 * 4 2 1 6 6 C 1.36937 * 125.64606 * 204.09355 * 5 4 2 7 7 H 1.07996 * 119.99824 * 161.25175 * 6 5 4 8 8 C 1.38807 * 120.00250 * 341.52653 * 6 5 4 9 9 N 1.31620 * 120.00450 * 157.60272 * 8 6 5 10 10 Si 1.86801 * 119.99892 * 337.60961 * 8 6 5 11 11 H 1.48500 * 109.47209 * 84.53337 * 10 8 6 12 12 H 1.48506 * 109.47109 * 204.53340 * 10 8 6 13 13 H 1.48497 * 109.47176 * 324.53007 * 10 8 6 14 14 C 1.47015 * 108.70568 * 24.35900 * 5 4 2 15 15 C 1.54337 * 107.26507 * 358.58089 * 14 5 4 16 16 H 1.09005 * 110.51605 * 96.45416 * 15 14 5 17 17 C 1.53001 * 111.00569 * 219.59972 * 15 14 5 18 18 C 1.52996 * 109.47006 * 288.78250 * 17 15 14 19 19 N 1.46497 * 109.46857 * 179.97438 * 18 17 15 20 20 C 1.34780 * 120.00316 * 179.97438 * 19 18 17 21 21 O 1.21622 * 119.99442 * 0.02562 * 20 19 18 22 22 C 1.47321 * 120.00383 * 179.97438 * 20 19 18 23 23 C 1.36572 * 126.21401 * 179.97438 * 22 20 19 24 24 N 1.34863 * 106.79041 * 179.97438 * 23 22 20 25 25 C 1.36306 * 107.86054 * 0.04658 * 24 23 22 26 26 N 1.29793 * 108.92275 * 359.65981 * 25 24 23 27 27 C 1.51109 * 123.90478 * 179.90052 * 25 24 23 28 28 C 1.53396 * 108.18689 * 344.04125 * 27 25 24 29 29 C 1.53135 * 109.24791 * 48.95983 * 28 27 25 30 30 C 1.46583 * 127.50232 * 180.09033 * 24 23 22 31 31 H 1.08995 * 109.47287 * 182.42421 * 1 2 3 32 32 H 1.08999 * 109.47052 * 302.42509 * 1 2 3 33 33 H 1.08997 * 109.46887 * 62.42304 * 1 2 3 34 34 H 1.08999 * 110.36273 * 86.04306 * 4 2 1 35 35 H 1.08995 * 110.36841 * 323.71790 * 4 2 1 36 36 H 0.97000 * 120.00315 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.88666 * 118.12600 * 14 5 4 38 38 H 1.08996 * 109.88479 * 239.29494 * 14 5 4 39 39 H 1.08994 * 109.46666 * 48.78433 * 17 15 14 40 40 H 1.09002 * 109.46878 * 168.78311 * 17 15 14 41 41 H 1.08994 * 109.47558 * 299.99637 * 18 17 15 42 42 H 1.09002 * 109.47253 * 60.00290 * 18 17 15 43 43 H 0.97004 * 120.00289 * 0.02562 * 19 18 17 44 44 H 1.08007 * 126.60167 * 359.97438 * 23 22 20 45 45 H 1.09001 * 109.71894 * 103.70837 * 27 25 24 46 46 H 1.08994 * 109.71902 * 224.36562 * 27 25 24 47 47 H 1.08999 * 109.50619 * 168.89387 * 28 27 25 48 48 H 1.09002 * 109.50108 * 288.98651 * 28 27 25 49 49 H 1.08997 * 109.46034 * 50.22533 * 29 28 27 50 50 H 1.09003 * 109.45439 * 170.19426 * 29 28 27 51 51 H 1.09005 * 109.57918 * 282.60049 * 30 24 23 52 52 H 1.08996 * 109.58346 * 43.01688 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4275 -1.2420 -0.7743 6 6 4.4642 -1.5649 -1.6086 7 1 5.4763 -1.5784 -1.2320 8 6 4.2149 -1.8694 -2.9397 9 7 5.1736 -1.7483 -3.8333 10 14 2.5185 -2.4508 -3.4630 11 1 1.6452 -1.2746 -3.7061 12 1 2.6318 -3.2494 -4.7099 13 1 1.9301 -3.2907 -2.3890 14 6 3.4667 -1.2786 0.6949 15 6 2.0871 -0.8078 1.2018 16 1 1.4482 -1.6634 1.4207 17 6 2.2317 0.0865 2.4348 18 6 2.6628 -0.7621 3.6326 19 7 2.8019 0.0943 4.8130 20 6 3.1750 -0.4396 5.9929 21 8 3.3967 -1.6325 6.0775 22 6 3.3155 0.4217 7.1798 23 6 3.6835 0.0173 8.4313 24 7 3.6868 1.1176 9.2110 25 6 3.3226 2.1792 8.4376 26 7 3.1082 1.7639 7.2267 27 6 3.2064 3.5957 8.9510 28 6 3.1639 3.5474 10.4836 29 6 4.3052 2.6625 10.9927 30 6 4.0172 1.2000 10.6368 31 1 -0.3633 -1.0267 0.0435 32 1 -0.3633 0.5510 0.8674 33 1 -0.3633 0.4757 -0.9109 34 1 2.1553 -0.1713 -2.0839 35 1 1.4522 -1.6702 -1.4027 36 1 4.9995 -1.9614 -4.7635 37 1 3.6616 -2.2954 1.0354 38 1 4.2431 -0.6073 1.0619 39 1 2.9836 0.8518 2.2422 40 1 1.2757 0.5629 2.6523 41 1 1.9110 -1.5274 3.8252 42 1 3.6188 -1.2385 3.4152 43 1 2.6247 1.0457 4.7456 44 1 3.9253 -0.9899 8.7375 45 1 4.0691 4.1768 8.6252 46 1 2.2914 4.0504 8.5717 47 1 3.2787 4.5552 10.8827 48 1 2.2090 3.1339 10.8082 49 1 5.2406 2.9726 10.5270 50 1 4.3875 2.7631 12.0750 51 1 3.1761 0.8381 11.2282 52 1 4.8992 0.5937 10.8430 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103051979.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:29 Heat of formation + Delta-G solvation = 29.125701 kcal Electronic energy + Delta-G solvation = -29762.260481 eV Core-core repulsion = 25762.395348 eV Total energy + Delta-G solvation = -3999.865133 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.76316 -39.41653 -38.37823 -36.99647 -35.20119 -33.89952 -33.18994 -31.46920 -31.01911 -30.31968 -29.06574 -27.39940 -25.84450 -25.26518 -24.21731 -22.84456 -22.73033 -21.70668 -20.27067 -20.22896 -19.55146 -19.32028 -17.86683 -16.79667 -16.65118 -16.53677 -15.85939 -15.52276 -15.15135 -14.92968 -14.86734 -14.61143 -14.48451 -14.19143 -14.07830 -13.81553 -13.49544 -13.33056 -13.03774 -12.87634 -12.74099 -12.41503 -12.26529 -11.85150 -11.78560 -11.74176 -11.68146 -11.46012 -11.35728 -11.22152 -10.86483 -10.77419 -10.57984 -10.42899 -10.09241 -10.08041 -10.02394 -9.82425 -9.65963 -9.34247 -9.03318 -8.69063 -8.58792 -6.93184 -5.86347 -3.15550 1.35885 2.10898 2.18236 3.26593 3.41300 3.47873 3.54304 3.57748 3.68739 3.88893 3.97065 4.01577 4.42696 4.56090 4.62928 4.68525 4.70687 4.83657 4.89889 4.99632 5.03540 5.05678 5.09005 5.17281 5.20946 5.21151 5.34191 5.44672 5.47952 5.51245 5.55324 5.66172 5.73203 5.87759 5.92086 5.95862 6.06797 6.15343 6.19625 6.23530 6.28887 6.35388 6.52495 6.52801 6.63317 6.66639 6.77391 6.92646 6.94324 7.40279 7.70145 7.82677 8.28861 8.40293 8.93527 9.78282 10.28916 11.30091 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.001765 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.344666 B =15856.305765 C =16163.718046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 H 0.079 0.921 4 C 0.116 3.884 5 N -0.610 5.610 6 C -0.238 4.238 7 H 0.091 0.909 8 C 0.019 3.981 9 N -0.911 5.911 10 Si 0.883 3.117 11 H -0.285 1.285 12 H -0.303 1.303 13 H -0.277 1.277 14 C 0.138 3.862 15 C -0.094 4.094 16 H 0.076 0.924 17 C -0.116 4.116 18 C 0.118 3.882 19 N -0.714 5.714 20 C 0.602 3.398 21 O -0.547 6.547 22 C -0.062 4.062 23 C 0.036 3.964 24 N -0.455 5.455 25 C 0.209 3.791 26 N -0.457 5.457 27 C -0.034 4.034 28 C -0.126 4.126 29 C -0.136 4.136 30 C 0.100 3.900 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.025 0.975 36 H 0.262 0.738 37 H 0.030 0.970 38 H 0.033 0.967 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.407 0.593 44 H 0.189 0.811 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.071 0.929 49 H 0.078 0.922 50 H 0.091 0.909 51 H 0.089 0.911 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.994 12.543 34.238 37.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.097 0.903 4 C -0.009 4.009 5 N -0.337 5.337 6 C -0.365 4.365 7 H 0.109 0.891 8 C -0.179 4.179 9 N -0.555 5.555 10 Si 0.714 3.286 11 H -0.212 1.212 12 H -0.232 1.232 13 H -0.203 1.203 14 C 0.013 3.987 15 C -0.113 4.113 16 H 0.095 0.905 17 C -0.154 4.154 18 C -0.005 4.005 19 N -0.365 5.365 20 C 0.388 3.612 21 O -0.424 6.424 22 C -0.191 4.191 23 C -0.103 4.103 24 N -0.137 5.137 25 C -0.054 4.054 26 N -0.177 5.177 27 C -0.073 4.073 28 C -0.165 4.165 29 C -0.174 4.174 30 C -0.021 4.021 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.242 0.758 44 H 0.206 0.794 45 H 0.110 0.890 46 H 0.116 0.884 47 H 0.103 0.897 48 H 0.090 0.910 49 H 0.096 0.904 50 H 0.110 0.890 51 H 0.107 0.893 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.886 12.094 33.500 36.276 hybrid contribution -0.695 -0.639 0.191 0.963 sum -7.581 11.455 33.691 36.384 Atomic orbital electron populations 1.21706 0.95295 1.01567 1.01141 1.22358 0.94601 0.99406 0.95630 0.90288 1.21998 0.87317 0.95618 0.95938 1.44784 1.09869 1.78239 1.00777 1.18662 0.86742 1.40875 0.90241 0.89115 1.24996 0.96876 1.00384 0.95621 1.69848 1.33016 1.51066 1.01590 0.86967 0.85685 0.79151 0.76840 1.21246 1.23154 1.20293 1.21444 0.93835 0.98127 0.85290 1.22177 0.98224 0.97663 0.93239 0.90540 1.21761 1.01801 0.98438 0.93407 1.21490 1.02290 0.93266 0.83444 1.45826 1.69010 1.12741 1.08898 1.16866 0.76576 0.86108 0.81700 1.90806 1.51670 1.14870 1.85098 1.20641 1.13167 0.90913 0.94357 1.22448 1.04254 0.92788 0.90833 1.45331 1.50302 1.07719 1.10353 1.23508 1.03630 0.91947 0.86365 1.70369 1.19505 1.09462 1.18350 1.20258 1.04719 0.87578 0.94734 1.21690 0.98925 1.01185 0.94651 1.21915 1.00078 0.92596 1.02802 1.22116 1.02591 0.99535 0.77893 0.92816 0.92898 0.92799 0.92554 0.95787 0.92830 0.95214 0.94869 0.90901 0.91401 0.91450 0.90834 0.75770 0.79444 0.88964 0.88384 0.89687 0.91001 0.90354 0.89002 0.89305 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.30 37.16 0.35 -1.61 16 2 C -0.10 -1.72 3.09 -88.47 -0.27 -1.99 16 3 H 0.08 1.32 8.05 -51.93 -0.42 0.90 16 4 C 0.12 2.62 4.16 -2.52 -0.01 2.61 16 5 N -0.61 -15.40 3.21 -170.07 -0.55 -15.95 16 6 C -0.24 -7.03 10.57 -15.06 -0.16 -7.19 16 7 H 0.09 2.84 8.06 -52.49 -0.42 2.41 16 8 C 0.02 0.58 5.43 -17.43 -0.09 0.49 16 9 N -0.91 -28.95 13.97 55.49 0.78 -28.18 16 10 Si 0.88 23.45 24.27 -169.99 -4.13 19.33 16 11 H -0.29 -7.26 6.49 56.52 0.37 -6.90 16 12 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 13 H -0.28 -7.30 6.66 56.52 0.38 -6.92 16 14 C 0.14 2.85 6.25 -3.06 -0.02 2.83 16 15 C -0.09 -1.52 2.38 -88.78 -0.21 -1.73 16 16 H 0.08 1.21 8.02 -51.93 -0.42 0.79 16 17 C -0.12 -1.51 4.74 -26.73 -0.13 -1.63 16 18 C 0.12 1.62 5.56 -4.05 -0.02 1.59 16 19 N -0.71 -9.42 5.55 -61.42 -0.34 -9.76 16 20 C 0.60 8.88 7.81 -12.57 -0.10 8.78 16 21 O -0.55 -9.62 16.88 5.26 0.09 -9.53 16 22 C -0.06 -0.79 6.98 -82.98 -0.58 -1.37 16 23 C 0.04 0.36 11.32 -16.82 -0.19 0.17 16 24 N -0.45 -3.45 3.11 -113.41 -0.35 -3.81 16 25 C 0.21 1.85 7.64 -154.63 -1.18 0.66 16 26 N -0.46 -5.41 11.00 -7.01 -0.08 -5.49 16 27 C -0.03 -0.16 6.33 -27.48 -0.17 -0.34 16 28 C -0.13 -0.30 5.95 -26.46 -0.16 -0.46 16 29 C -0.14 -0.26 5.93 -26.53 -0.16 -0.42 16 30 C 0.10 0.33 6.96 -3.87 -0.03 0.31 16 31 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 1.36 6.64 -51.93 -0.34 1.02 16 35 H 0.02 0.57 5.47 -51.93 -0.28 0.29 16 36 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.68 7.70 -51.93 -0.40 0.28 16 39 H 0.07 0.96 7.95 -51.93 -0.41 0.55 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.13 7.69 -51.93 -0.40 0.73 16 43 H 0.41 4.78 8.19 -40.82 -0.33 4.44 16 44 H 0.19 1.53 8.06 -52.48 -0.42 1.11 16 45 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 48 H 0.07 0.19 8.12 -51.93 -0.42 -0.23 16 49 H 0.08 0.20 8.11 -51.93 -0.42 -0.22 16 50 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 51 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 52 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 406.68 15.07 6.13 6.13 Total: -1.00 -37.24 406.68 -10.55 -47.80 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -8.96 Total: -1.25 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -3.14 Total: 0.72 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -0.54 Total: -63.19 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -4.13 Total: 19.33 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.24 -10.55 -47.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103051979.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.921 kcal (2) G-P(sol) polarization free energy of solvation -37.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds