Wall clock time and date at job start Wed Apr 1 2020 04:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.88846 * 2 1 4 4 C 1.54914 * 111.00145 * 236.12048 * 2 1 3 5 5 N 1.47427 * 104.83009 * 204.87596 * 4 2 1 6 6 C 1.36937 * 125.64606 * 204.09355 * 5 4 2 7 7 H 1.07996 * 119.99824 * 161.25175 * 6 5 4 8 8 C 1.38807 * 120.00250 * 341.52653 * 6 5 4 9 9 N 1.31620 * 120.00450 * 157.60272 * 8 6 5 10 10 Si 1.86801 * 119.99892 * 337.60961 * 8 6 5 11 11 H 1.48500 * 109.47209 * 84.53337 * 10 8 6 12 12 H 1.48506 * 109.47109 * 204.53340 * 10 8 6 13 13 H 1.48497 * 109.47176 * 324.53007 * 10 8 6 14 14 C 1.47015 * 108.70568 * 24.35900 * 5 4 2 15 15 C 1.54337 * 107.26507 * 358.58089 * 14 5 4 16 16 H 1.09005 * 110.51605 * 96.45416 * 15 14 5 17 17 C 1.53001 * 111.00569 * 219.59972 * 15 14 5 18 18 C 1.52996 * 109.47006 * 288.78250 * 17 15 14 19 19 N 1.46497 * 109.46857 * 179.97438 * 18 17 15 20 20 C 1.34780 * 120.00316 * 179.97438 * 19 18 17 21 21 O 1.21622 * 119.99442 * 0.02562 * 20 19 18 22 22 C 1.47321 * 120.00383 * 179.97438 * 20 19 18 23 23 C 1.36572 * 126.21401 * 179.97438 * 22 20 19 24 24 N 1.34863 * 106.79041 * 179.97438 * 23 22 20 25 25 C 1.36306 * 107.86054 * 0.04658 * 24 23 22 26 26 N 1.29793 * 108.92275 * 359.65981 * 25 24 23 27 27 C 1.51109 * 123.90478 * 179.90052 * 25 24 23 28 28 C 1.53396 * 108.18689 * 344.04125 * 27 25 24 29 29 C 1.53135 * 109.24791 * 48.95983 * 28 27 25 30 30 C 1.46583 * 127.50232 * 180.09033 * 24 23 22 31 31 H 1.08995 * 109.47287 * 182.42421 * 1 2 3 32 32 H 1.08999 * 109.47052 * 302.42509 * 1 2 3 33 33 H 1.08997 * 109.46887 * 62.42304 * 1 2 3 34 34 H 1.08999 * 110.36273 * 86.04306 * 4 2 1 35 35 H 1.08995 * 110.36841 * 323.71790 * 4 2 1 36 36 H 0.97000 * 120.00315 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.88666 * 118.12600 * 14 5 4 38 38 H 1.08996 * 109.88479 * 239.29494 * 14 5 4 39 39 H 1.08994 * 109.46666 * 48.78433 * 17 15 14 40 40 H 1.09002 * 109.46878 * 168.78311 * 17 15 14 41 41 H 1.08994 * 109.47558 * 299.99637 * 18 17 15 42 42 H 1.09002 * 109.47253 * 60.00290 * 18 17 15 43 43 H 0.97004 * 120.00289 * 0.02562 * 19 18 17 44 44 H 1.08007 * 126.60167 * 359.97438 * 23 22 20 45 45 H 1.09001 * 109.71894 * 103.70837 * 27 25 24 46 46 H 1.08994 * 109.71902 * 224.36562 * 27 25 24 47 47 H 1.08999 * 109.50619 * 168.89387 * 28 27 25 48 48 H 1.09002 * 109.50108 * 288.98651 * 28 27 25 49 49 H 1.08997 * 109.46034 * 50.22533 * 29 28 27 50 50 H 1.09003 * 109.45439 * 170.19426 * 29 28 27 51 51 H 1.09005 * 109.57918 * 282.60049 * 30 24 23 52 52 H 1.08996 * 109.58346 * 43.01688 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4275 -1.2420 -0.7743 6 6 4.4642 -1.5649 -1.6086 7 1 5.4763 -1.5784 -1.2320 8 6 4.2149 -1.8694 -2.9397 9 7 5.1736 -1.7483 -3.8333 10 14 2.5185 -2.4508 -3.4630 11 1 1.6452 -1.2746 -3.7061 12 1 2.6318 -3.2494 -4.7099 13 1 1.9301 -3.2907 -2.3890 14 6 3.4667 -1.2786 0.6949 15 6 2.0871 -0.8078 1.2018 16 1 1.4482 -1.6634 1.4207 17 6 2.2317 0.0865 2.4348 18 6 2.6628 -0.7621 3.6326 19 7 2.8019 0.0943 4.8130 20 6 3.1750 -0.4396 5.9929 21 8 3.3967 -1.6325 6.0775 22 6 3.3155 0.4217 7.1798 23 6 3.6835 0.0173 8.4313 24 7 3.6868 1.1176 9.2110 25 6 3.3226 2.1792 8.4376 26 7 3.1082 1.7639 7.2267 27 6 3.2064 3.5957 8.9510 28 6 3.1639 3.5474 10.4836 29 6 4.3052 2.6625 10.9927 30 6 4.0172 1.2000 10.6368 31 1 -0.3633 -1.0267 0.0435 32 1 -0.3633 0.5510 0.8674 33 1 -0.3633 0.4757 -0.9109 34 1 2.1553 -0.1713 -2.0839 35 1 1.4522 -1.6702 -1.4027 36 1 4.9995 -1.9614 -4.7635 37 1 3.6616 -2.2954 1.0354 38 1 4.2431 -0.6073 1.0619 39 1 2.9836 0.8518 2.2422 40 1 1.2757 0.5629 2.6523 41 1 1.9110 -1.5274 3.8252 42 1 3.6188 -1.2385 3.4152 43 1 2.6247 1.0457 4.7456 44 1 3.9253 -0.9899 8.7375 45 1 4.0691 4.1768 8.6252 46 1 2.2914 4.0504 8.5717 47 1 3.2787 4.5552 10.8827 48 1 2.2090 3.1339 10.8082 49 1 5.2406 2.9726 10.5270 50 1 4.3875 2.7631 12.0750 51 1 3.1761 0.8381 11.2282 52 1 4.8992 0.5937 10.8430 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103051979.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:27 Heat of formation + Delta-G solvation = 3.697176 kcal Electronic energy + Delta-G solvation = -29763.363144 eV Core-core repulsion = 25762.395348 eV Total energy + Delta-G solvation = -4000.967796 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.42509 -40.56288 -39.88007 -37.38723 -36.50101 -35.05828 -34.38978 -33.10211 -32.58507 -30.98222 -29.61958 -28.87528 -27.51789 -26.19316 -25.19472 -23.91663 -23.20584 -23.04743 -21.84627 -21.33981 -20.65482 -19.98219 -18.92477 -18.63600 -17.34896 -17.20660 -17.07790 -16.92889 -16.68710 -16.25758 -15.48110 -15.28684 -15.19281 -15.15222 -15.03385 -14.69228 -14.66185 -14.55527 -14.48369 -14.32763 -14.07125 -13.71607 -13.37846 -13.00171 -12.90940 -12.79629 -12.72245 -12.48515 -12.30089 -12.13185 -12.08767 -11.98139 -11.90771 -11.73766 -11.47306 -11.42554 -11.28378 -11.25844 -11.00977 -10.79371 -10.71104 -10.13737 -9.47002 -9.05192 -8.20066 -5.46088 0.53074 1.27699 1.34707 1.36234 1.45855 1.63681 2.27422 2.39479 2.48903 3.02270 3.14389 3.34365 3.56598 3.60548 3.63754 3.81320 3.82080 3.89347 3.98404 4.08591 4.20698 4.29609 4.34277 4.37344 4.42738 4.45155 4.50959 4.56675 4.58610 4.69643 4.74913 4.77856 4.86631 4.92550 4.92873 4.97276 5.01351 5.06895 5.09615 5.12790 5.15412 5.19599 5.31635 5.32237 5.40500 5.42552 5.45397 5.56722 5.67721 6.05097 6.08450 6.48563 6.76062 6.85509 7.22507 7.53023 8.10839 9.00142 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.001765 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.344666 B =15856.305765 C =16163.718046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 H 0.085 0.915 4 C 0.107 3.893 5 N -0.630 5.630 6 C -0.237 4.237 7 H 0.055 0.945 8 C -0.039 4.039 9 N -0.957 5.957 10 Si 0.949 3.051 11 H -0.266 1.266 12 H -0.306 1.306 13 H -0.273 1.273 14 C 0.132 3.868 15 C -0.079 4.079 16 H 0.088 0.912 17 C -0.100 4.100 18 C 0.123 3.877 19 N -0.706 5.706 20 C 0.597 3.403 21 O -0.586 6.586 22 C -0.100 4.100 23 C 0.041 3.959 24 N -0.448 5.448 25 C 0.209 3.791 26 N -0.488 5.488 27 C -0.036 4.036 28 C -0.121 4.121 29 C -0.132 4.132 30 C 0.090 3.910 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.036 0.964 35 H 0.022 0.978 36 H 0.263 0.737 37 H 0.020 0.980 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.415 0.585 44 H 0.201 0.799 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.118 0.882 51 H 0.105 0.895 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.660 14.412 37.432 41.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 H 0.104 0.896 4 C -0.018 4.018 5 N -0.356 5.356 6 C -0.366 4.366 7 H 0.073 0.927 8 C -0.233 4.233 9 N -0.604 5.604 10 Si 0.778 3.222 11 H -0.192 1.192 12 H -0.234 1.234 13 H -0.198 1.198 14 C 0.007 3.993 15 C -0.099 4.099 16 H 0.106 0.894 17 C -0.138 4.138 18 C -0.001 4.001 19 N -0.357 5.357 20 C 0.384 3.616 21 O -0.467 6.467 22 C -0.228 4.228 23 C -0.100 4.100 24 N -0.129 5.129 25 C -0.056 4.056 26 N -0.208 5.208 27 C -0.074 4.074 28 C -0.159 4.159 29 C -0.170 4.170 30 C -0.030 4.030 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.047 0.953 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.252 0.748 44 H 0.218 0.782 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.124 0.876 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.136 0.864 51 H 0.123 0.877 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.585 14.012 36.744 40.476 hybrid contribution 0.263 -1.163 -0.668 1.366 sum -9.322 12.850 36.077 39.415 Atomic orbital electron populations 1.21701 0.92153 1.02383 1.02980 1.22324 0.97000 0.98684 0.92750 0.89633 1.22159 0.85946 0.95862 0.97802 1.44926 1.10064 1.78282 1.02345 1.18603 0.86874 1.40060 0.91049 0.92749 1.25658 1.00925 1.01058 0.95679 1.69973 1.35466 1.52970 1.01961 0.85900 0.81237 0.78997 0.76115 1.19165 1.23402 1.19838 1.21636 0.96986 0.97766 0.82896 1.22103 0.95093 0.98522 0.94151 0.89412 1.21625 1.03479 0.97453 0.91244 1.21364 1.01113 0.93528 0.84051 1.45737 1.68481 1.13033 1.08404 1.17236 0.75819 0.85941 0.82560 1.90767 1.53620 1.16499 1.85813 1.20503 1.16147 0.91550 0.94555 1.22670 1.02932 0.93955 0.90455 1.45619 1.48917 1.06576 1.11792 1.24269 1.01908 0.93578 0.85817 1.70295 1.21084 1.09062 1.20343 1.20487 1.05152 0.85160 0.96648 1.21702 0.99137 1.02571 0.92523 1.21954 0.99499 0.91183 1.04353 1.22552 1.03889 1.01192 0.75384 0.92675 0.89653 0.92318 0.94575 0.96066 0.92836 0.96190 0.95253 0.90924 0.88181 0.91408 0.93186 0.74812 0.78233 0.88273 0.88087 0.87612 0.90976 0.90899 0.86360 0.87681 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.30 71.98 0.67 -2.53 16 2 C -0.09 -2.78 3.09 -9.40 -0.03 -2.81 16 3 H 0.09 2.61 8.05 -2.38 -0.02 2.59 16 4 C 0.11 4.69 4.16 86.86 0.36 5.05 16 5 N -0.63 -32.24 3.21 -691.99 -2.22 -34.45 16 6 C -0.24 -14.56 10.57 84.03 0.89 -13.68 16 7 H 0.05 3.63 8.06 -2.91 -0.02 3.61 16 8 C -0.04 -2.42 5.43 84.86 0.46 -1.95 16 9 N -0.96 -62.98 13.97 21.65 0.30 -62.67 16 10 Si 0.95 49.30 24.27 68.60 1.66 50.97 16 11 H -0.27 -12.86 6.49 99.48 0.65 -12.22 16 12 H -0.31 -15.86 7.11 99.48 0.71 -15.16 16 13 H -0.27 -13.83 6.66 99.48 0.66 -13.17 16 14 C 0.13 5.48 6.25 86.73 0.54 6.02 16 15 C -0.08 -2.41 2.38 -9.60 -0.02 -2.43 16 16 H 0.09 2.53 8.02 -2.38 -0.02 2.51 16 17 C -0.10 -2.36 4.74 30.59 0.14 -2.22 16 18 C 0.12 3.29 5.56 86.38 0.48 3.77 16 19 N -0.71 -18.44 5.55 -466.48 -2.59 -21.03 16 20 C 0.60 17.98 7.81 86.63 0.68 18.65 16 21 O -0.59 -21.30 16.88 -4.10 -0.07 -21.37 16 22 C -0.10 -2.55 6.98 40.52 0.28 -2.26 16 23 C 0.04 0.81 11.32 83.84 0.95 1.76 16 24 N -0.45 -6.11 3.11 -512.72 -1.60 -7.70 16 25 C 0.21 3.42 7.64 138.05 1.05 4.48 16 26 N -0.49 -11.36 11.00 -176.08 -1.94 -13.29 16 27 C -0.04 -0.27 6.33 30.11 0.19 -0.08 16 28 C -0.12 -0.19 5.95 30.77 0.18 0.00 16 29 C -0.13 -0.06 5.93 30.72 0.18 0.12 16 30 C 0.09 0.35 6.96 86.45 0.60 0.95 16 31 H 0.05 1.31 8.11 -2.39 -0.02 1.30 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 1.72 6.64 -2.39 -0.02 1.70 16 35 H 0.02 0.97 5.47 -2.39 -0.01 0.96 16 36 H 0.26 16.34 8.31 -92.71 -0.77 15.57 16 37 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 38 H 0.03 1.23 7.70 -2.39 -0.02 1.21 16 39 H 0.07 1.77 7.95 -2.39 -0.02 1.75 16 40 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.05 1.57 7.69 -2.39 -0.02 1.55 16 43 H 0.42 9.40 8.19 -92.71 -0.76 8.64 16 44 H 0.20 3.19 8.06 -2.91 -0.02 3.16 16 45 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 48 H 0.07 0.15 8.12 -2.39 -0.02 0.13 16 49 H 0.07 0.16 8.11 -2.39 -0.02 0.14 16 50 H 0.12 -0.50 8.14 -2.39 -0.02 -0.52 16 51 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 52 H 0.11 0.16 8.14 -2.39 -0.02 0.15 16 Total: -1.00 -85.58 406.68 1.22 -84.36 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.04 Total: 12.37 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 7.62 Total: 12.83 kcal Atomic # 7 Polarization: -131.11 SS G_CDS: -8.04 Total: -139.15 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.07 Total: -21.37 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 1.66 Total: 50.97 kcal Total: -85.58 1.22 -84.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103051979.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.056 kcal (2) G-P(sol) polarization free energy of solvation -85.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds