Wall clock time and date at job start Wed Apr 1 2020 04:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.36937 * 125.65098 * 204.09440 * 5 4 2 7 7 H 1.08000 * 120.00262 * 180.02562 * 6 5 4 8 8 C 1.38813 * 119.99548 * 0.03593 * 6 5 4 9 9 N 1.31615 * 120.00732 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99599 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46881 * 90.00394 * 10 8 6 12 12 H 1.48499 * 109.47149 * 210.00031 * 10 8 6 13 13 H 1.48496 * 109.47418 * 330.00294 * 10 8 6 14 14 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 15 15 C 1.54322 * 107.27336 * 358.94171 * 14 5 4 16 16 H 1.09002 * 110.71963 * 96.17078 * 15 14 5 17 17 C 1.53001 * 110.71941 * 219.26699 * 15 14 5 18 18 C 1.52996 * 109.47434 * 291.15521 * 17 15 14 19 19 N 1.46497 * 109.47458 * 179.97438 * 18 17 15 20 20 C 1.34777 * 120.00116 * 179.97438 * 19 18 17 21 21 O 1.21571 * 119.99937 * 0.02562 * 20 19 18 22 22 C 1.47714 * 119.99958 * 179.97438 * 20 19 18 23 23 C 1.41500 * 126.51772 * 179.71410 * 22 20 19 24 24 C 1.35360 * 105.50089 * 179.85056 * 23 22 20 25 25 C 1.50703 * 126.38553 * 180.14362 * 24 23 22 26 26 C 1.52997 * 117.49848 * 34.06604 * 25 24 23 27 27 C 1.53000 * 117.49609 * 325.40657 * 25 24 23 28 28 N 1.35033 * 107.23276 * 0.41248 * 24 23 22 29 29 C 1.46497 * 124.88947 * 179.73216 * 28 24 23 30 30 N 1.28466 * 110.22841 * 359.72506 * 28 24 23 31 31 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 32 32 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 33 33 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 34 34 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 35 35 H 1.09003 * 110.36973 * 323.75054 * 4 2 1 36 36 H 0.96996 * 120.00556 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.88222 * 239.52595 * 14 5 4 38 38 H 1.09005 * 110.01447 * 118.43174 * 14 5 4 39 39 H 1.08999 * 109.47061 * 51.15825 * 17 15 14 40 40 H 1.09006 * 109.46767 * 171.15478 * 17 15 14 41 41 H 1.08999 * 109.47244 * 300.00191 * 18 17 15 42 42 H 1.09005 * 109.46729 * 59.99925 * 18 17 15 43 43 H 0.96998 * 119.99716 * 0.02562 * 19 18 17 44 44 H 1.07995 * 127.24800 * 359.97438 * 23 22 20 45 45 H 1.08999 * 115.55263 * 179.73709 * 25 24 23 46 46 H 1.09000 * 117.50015 * 359.97438 * 26 25 24 47 47 H 1.08999 * 117.50107 * 145.02144 * 26 25 24 48 48 H 1.09011 * 117.49767 * 214.97938 * 27 25 24 49 49 H 1.08991 * 117.50154 * 359.97438 * 27 25 24 50 50 H 1.08998 * 109.46951 * 269.97366 * 29 28 24 51 51 H 1.09004 * 109.46957 * 29.97138 * 29 28 24 52 52 H 1.08994 * 109.47502 * 149.97170 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4640 -1.5667 -1.6073 7 1 5.4125 -1.8770 -1.1944 8 6 4.2960 -1.4957 -2.9834 9 7 3.1404 -1.1170 -3.4868 10 14 5.7107 -1.9365 -4.1209 11 1 5.6569 -3.3861 -4.4388 12 1 5.6003 -1.1502 -5.3758 13 1 6.9993 -1.6237 -3.4525 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4468 -1.6633 1.4209 17 6 2.2349 0.0839 2.4364 18 6 2.7263 -0.7564 3.6167 19 7 2.8692 0.0978 4.7983 20 6 3.2918 -0.4300 5.9642 21 8 3.5549 -1.6148 6.0352 22 6 3.4365 0.4313 7.1555 23 6 3.8610 0.0242 8.4424 24 6 3.8420 1.1451 9.2011 25 6 4.2148 1.2450 10.6578 26 6 5.3348 0.3342 11.1645 27 6 3.8821 0.0516 11.5556 28 7 3.4209 2.1558 8.4108 29 6 3.2528 3.5448 8.8452 30 7 3.1891 1.7243 7.2233 31 1 -0.3633 0.4520 0.9229 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1559 -0.1720 -2.0837 35 1 1.4519 -1.6704 -1.4025 36 1 3.0231 -1.0670 -4.4483 37 1 4.2426 -0.5998 1.0598 38 1 3.6662 -2.2885 1.0422 39 1 2.9555 0.8748 2.2284 40 1 1.2699 0.5271 2.6827 41 1 2.0056 -1.5473 3.8247 42 1 3.6912 -1.1996 3.3703 43 1 2.6590 1.0430 4.7417 44 1 4.1430 -0.9709 8.7533 45 1 4.1389 2.2405 11.0953 46 1 5.8018 -0.3376 10.4443 47 1 5.9956 0.7303 11.9356 48 1 3.5878 0.2619 12.5839 49 1 3.3933 -0.8056 11.0927 50 1 2.2378 3.6894 9.2152 51 1 3.9645 3.7653 9.6408 52 1 3.4311 4.2131 8.0028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103062471.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:19 Heat of formation + Delta-G solvation = 83.651683 kcal Electronic energy + Delta-G solvation = -29550.461127 eV Core-core repulsion = 25552.960418 eV Total energy + Delta-G solvation = -3997.500709 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.02642 -39.42486 -38.06164 -37.70776 -35.15989 -33.86952 -33.16730 -31.21220 -30.68013 -30.53033 -28.08031 -26.67252 -25.60053 -24.41702 -23.80405 -22.91200 -22.89101 -21.83226 -20.80676 -19.89420 -19.54155 -19.06687 -17.95641 -16.78795 -16.65726 -16.65083 -15.73493 -15.55489 -15.47638 -14.93613 -14.74820 -14.31066 -14.26939 -13.88842 -13.67050 -13.51556 -13.16275 -13.04851 -12.90231 -12.73913 -12.32462 -12.07307 -11.99378 -11.94918 -11.58445 -11.52944 -11.44099 -11.36165 -11.06233 -10.95310 -10.88777 -10.78660 -10.69390 -10.23554 -10.03539 -9.82625 -9.74649 -9.64614 -9.41015 -9.25809 -9.09460 -8.96774 -8.58130 -6.74359 -5.58087 -2.99186 1.33263 1.73637 2.07377 3.15224 3.32713 3.44598 3.44911 3.49407 3.51370 3.84862 4.02418 4.32037 4.43552 4.44493 4.55214 4.57953 4.61109 4.87034 4.99025 5.03223 5.14112 5.18952 5.19708 5.37515 5.38126 5.42673 5.52984 5.61080 5.61114 5.64210 5.68531 5.75354 5.85234 6.02116 6.04643 6.11109 6.22518 6.32254 6.34367 6.38561 6.40954 6.49278 6.63272 6.69252 6.77886 6.91127 7.10540 7.40626 7.62615 7.69447 7.71473 7.94159 8.20262 8.44286 9.30073 9.91132 10.56946 11.45573 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.001762 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.060558 B =15886.252052 C =16546.416922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.068 0.932 4 C 0.159 3.841 5 N -0.606 5.606 6 C -0.219 4.219 7 H 0.077 0.923 8 C -0.014 4.014 9 N -0.923 5.923 10 Si 0.913 3.087 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.139 3.861 15 C -0.092 4.092 16 H 0.073 0.927 17 C -0.116 4.116 18 C 0.118 3.882 19 N -0.715 5.715 20 C 0.601 3.399 21 O -0.533 6.533 22 C -0.010 4.010 23 C -0.177 4.177 24 C 0.045 3.955 25 C -0.100 4.100 26 C -0.162 4.162 27 C -0.161 4.161 28 N -0.280 5.280 29 C 0.085 3.915 30 N -0.260 5.260 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.104 0.896 35 H 0.011 0.989 36 H 0.251 0.749 37 H 0.022 0.978 38 H 0.020 0.980 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.405 0.595 44 H 0.160 0.840 45 H 0.116 0.884 46 H 0.103 0.897 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.085 0.915 51 H 0.094 0.906 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 10.610 31.092 32.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.086 0.914 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.347 4.347 7 H 0.094 0.906 8 C -0.209 4.209 9 N -0.572 5.572 10 Si 0.744 3.256 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.013 3.987 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.154 4.154 18 C -0.005 4.005 19 N -0.366 5.366 20 C 0.385 3.615 21 O -0.407 6.407 22 C -0.170 4.170 23 C -0.205 4.205 24 C -0.079 4.079 25 C -0.119 4.119 26 C -0.199 4.199 27 C -0.199 4.199 28 N -0.068 5.068 29 C -0.055 4.055 30 N -0.096 5.096 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.029 0.971 36 H 0.062 0.938 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.240 0.760 44 H 0.178 0.822 45 H 0.134 0.866 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.104 0.896 51 H 0.113 0.887 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.715 10.769 30.256 32.230 hybrid contribution 0.838 -0.337 -0.128 0.912 sum -1.878 10.433 30.128 31.938 Atomic orbital electron populations 1.21634 0.95799 1.01314 1.00333 1.22631 0.94349 0.99361 0.97112 0.91398 1.21968 0.84091 0.95813 0.94724 1.44504 1.10515 1.78905 0.99196 1.19099 0.91094 1.37299 0.87245 0.90561 1.24778 0.97275 1.02222 0.96607 1.69803 1.22424 1.54080 1.10903 0.86084 0.81308 0.77812 0.80391 1.21698 1.21719 1.20747 1.21375 0.93760 0.97266 0.86293 1.22139 0.98109 0.97658 0.93265 0.90886 1.21779 1.01287 0.98575 0.93758 1.21551 1.02291 0.93347 0.83334 1.45921 1.67343 1.13435 1.09900 1.16868 0.77189 0.86125 0.81317 1.90807 1.50541 1.15079 1.84317 1.21904 1.08408 0.90568 0.96088 1.21395 1.07990 0.99310 0.91784 1.20418 1.05522 0.88251 0.93713 1.20282 1.06208 0.97311 0.88142 1.23126 0.91528 1.01949 1.03310 1.23119 0.98644 0.98461 0.99665 1.45210 1.46517 1.09231 1.05821 1.22172 1.03898 0.77107 1.02353 1.73540 1.20016 1.12820 1.03197 0.93834 0.92939 0.93018 0.87808 0.97086 0.93848 0.95970 0.96233 0.91181 0.91586 0.91288 0.90755 0.76021 0.82221 0.86649 0.87847 0.87924 0.87949 0.87887 0.89633 0.88740 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.31 37.16 0.35 -1.75 16 2 C -0.11 -2.17 3.09 -88.47 -0.27 -2.44 16 3 H 0.07 1.29 8.05 -51.93 -0.42 0.87 16 4 C 0.16 3.93 5.36 -2.53 -0.01 3.91 16 5 N -0.61 -16.01 3.39 -170.07 -0.58 -16.59 16 6 C -0.22 -6.30 10.27 -15.06 -0.15 -6.45 16 7 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 8 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 9 N -0.92 -27.46 10.09 55.49 0.56 -26.90 16 10 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.14 3.00 6.10 -3.07 -0.02 2.98 16 15 C -0.09 -1.61 2.42 -88.79 -0.21 -1.82 16 16 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 17 C -0.12 -1.61 4.73 -26.73 -0.13 -1.73 16 18 C 0.12 1.66 5.54 -4.05 -0.02 1.64 16 19 N -0.71 -9.42 5.55 -61.29 -0.34 -9.76 16 20 C 0.60 8.97 7.83 -12.39 -0.10 8.87 16 21 O -0.53 -9.59 16.93 5.30 0.09 -9.51 16 22 C -0.01 -0.12 7.13 -82.76 -0.59 -0.72 16 23 C -0.18 -1.98 9.86 -39.37 -0.39 -2.37 16 24 C 0.04 0.39 6.60 -82.21 -0.54 -0.15 16 25 C -0.10 -0.54 5.94 -91.77 -0.54 -1.09 16 26 C -0.16 -0.78 10.05 -26.69 -0.27 -1.05 16 27 C -0.16 -0.77 10.06 -26.69 -0.27 -1.03 16 28 N -0.28 -2.45 3.70 -63.86 -0.24 -2.69 16 29 C 0.09 0.33 11.05 59.85 0.66 0.99 16 30 N -0.26 -2.99 11.67 33.42 0.39 -2.60 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.10 2.89 5.87 -51.93 -0.30 2.58 16 35 H 0.01 0.29 7.98 -51.93 -0.41 -0.12 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.02 0.48 7.73 -51.93 -0.40 0.08 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.99 8.00 -51.93 -0.42 0.57 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.17 7.58 -51.93 -0.39 0.78 16 43 H 0.41 4.59 8.20 -40.82 -0.33 4.25 16 44 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.12 0.38 7.16 -51.93 -0.37 0.01 16 46 H 0.10 0.60 7.95 -51.93 -0.41 0.18 16 47 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.10 0.33 8.14 -51.92 -0.42 -0.10 16 49 H 0.10 0.58 7.96 -51.93 -0.41 0.16 16 50 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 51 H 0.09 0.15 7.12 -51.93 -0.37 -0.22 16 52 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 420.23 15.07 6.33 6.33 Total: -1.00 -35.26 420.23 -10.28 -45.54 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -8.86 Total: 1.25 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -2.61 Total: -2.71 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.20 Total: -58.53 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -35.26 -10.28 -45.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103062471.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.190 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds