Wall clock time and date at job start Wed Apr 1 2020 04:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.36937 * 125.65098 * 204.09440 * 5 4 2 7 7 H 1.08000 * 120.00262 * 180.02562 * 6 5 4 8 8 C 1.38813 * 119.99548 * 0.03593 * 6 5 4 9 9 N 1.31615 * 120.00732 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99599 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46881 * 90.00394 * 10 8 6 12 12 H 1.48499 * 109.47149 * 210.00031 * 10 8 6 13 13 H 1.48496 * 109.47418 * 330.00294 * 10 8 6 14 14 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 15 15 C 1.54322 * 107.27336 * 358.94171 * 14 5 4 16 16 H 1.09002 * 110.71963 * 96.17078 * 15 14 5 17 17 C 1.53001 * 110.71941 * 219.26699 * 15 14 5 18 18 C 1.52996 * 109.47434 * 291.15521 * 17 15 14 19 19 N 1.46497 * 109.47458 * 179.97438 * 18 17 15 20 20 C 1.34777 * 120.00116 * 179.97438 * 19 18 17 21 21 O 1.21571 * 119.99937 * 0.02562 * 20 19 18 22 22 C 1.47714 * 119.99958 * 179.97438 * 20 19 18 23 23 C 1.41500 * 126.51772 * 179.71410 * 22 20 19 24 24 C 1.35360 * 105.50089 * 179.85056 * 23 22 20 25 25 C 1.50703 * 126.38553 * 180.14362 * 24 23 22 26 26 C 1.52997 * 117.49848 * 34.06604 * 25 24 23 27 27 C 1.53000 * 117.49609 * 325.40657 * 25 24 23 28 28 N 1.35033 * 107.23276 * 0.41248 * 24 23 22 29 29 C 1.46497 * 124.88947 * 179.73216 * 28 24 23 30 30 N 1.28466 * 110.22841 * 359.72506 * 28 24 23 31 31 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 32 32 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 33 33 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 34 34 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 35 35 H 1.09003 * 110.36973 * 323.75054 * 4 2 1 36 36 H 0.96996 * 120.00556 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.88222 * 239.52595 * 14 5 4 38 38 H 1.09005 * 110.01447 * 118.43174 * 14 5 4 39 39 H 1.08999 * 109.47061 * 51.15825 * 17 15 14 40 40 H 1.09006 * 109.46767 * 171.15478 * 17 15 14 41 41 H 1.08999 * 109.47244 * 300.00191 * 18 17 15 42 42 H 1.09005 * 109.46729 * 59.99925 * 18 17 15 43 43 H 0.96998 * 119.99716 * 0.02562 * 19 18 17 44 44 H 1.07995 * 127.24800 * 359.97438 * 23 22 20 45 45 H 1.08999 * 115.55263 * 179.73709 * 25 24 23 46 46 H 1.09000 * 117.50015 * 359.97438 * 26 25 24 47 47 H 1.08999 * 117.50107 * 145.02144 * 26 25 24 48 48 H 1.09011 * 117.49767 * 214.97938 * 27 25 24 49 49 H 1.08991 * 117.50154 * 359.97438 * 27 25 24 50 50 H 1.08998 * 109.46951 * 269.97366 * 29 28 24 51 51 H 1.09004 * 109.46957 * 29.97138 * 29 28 24 52 52 H 1.08994 * 109.47502 * 149.97170 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4640 -1.5667 -1.6073 7 1 5.4125 -1.8770 -1.1944 8 6 4.2960 -1.4957 -2.9834 9 7 3.1404 -1.1170 -3.4868 10 14 5.7107 -1.9365 -4.1209 11 1 5.6569 -3.3861 -4.4388 12 1 5.6003 -1.1502 -5.3758 13 1 6.9993 -1.6237 -3.4525 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4468 -1.6633 1.4209 17 6 2.2349 0.0839 2.4364 18 6 2.7263 -0.7564 3.6167 19 7 2.8692 0.0978 4.7983 20 6 3.2918 -0.4300 5.9642 21 8 3.5549 -1.6148 6.0352 22 6 3.4365 0.4313 7.1555 23 6 3.8610 0.0242 8.4424 24 6 3.8420 1.1451 9.2011 25 6 4.2148 1.2450 10.6578 26 6 5.3348 0.3342 11.1645 27 6 3.8821 0.0516 11.5556 28 7 3.4209 2.1558 8.4108 29 6 3.2528 3.5448 8.8452 30 7 3.1891 1.7243 7.2233 31 1 -0.3633 0.4520 0.9229 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1559 -0.1720 -2.0837 35 1 1.4519 -1.6704 -1.4025 36 1 3.0231 -1.0670 -4.4483 37 1 4.2426 -0.5998 1.0598 38 1 3.6662 -2.2885 1.0422 39 1 2.9555 0.8748 2.2284 40 1 1.2699 0.5271 2.6827 41 1 2.0056 -1.5473 3.8247 42 1 3.6912 -1.1996 3.3703 43 1 2.6590 1.0430 4.7417 44 1 4.1430 -0.9709 8.7533 45 1 4.1389 2.2405 11.0953 46 1 5.8018 -0.3376 10.4443 47 1 5.9956 0.7303 11.9356 48 1 3.5878 0.2619 12.5839 49 1 3.3933 -0.8056 11.0927 50 1 2.2378 3.6894 9.2152 51 1 3.9645 3.7653 9.6408 52 1 3.4311 4.2131 8.0028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103062471.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:18 Heat of formation + Delta-G solvation = 61.228825 kcal Electronic energy + Delta-G solvation = -29551.433455 eV Core-core repulsion = 25552.960418 eV Total energy + Delta-G solvation = -3998.473037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.76861 -40.60781 -39.68168 -38.12860 -36.51102 -35.04000 -34.49288 -32.55199 -32.47897 -31.38575 -29.03633 -28.07646 -27.30197 -25.78535 -24.60438 -23.97341 -23.23346 -23.20288 -21.68335 -21.36040 -20.87475 -20.31176 -18.86811 -18.64508 -17.55650 -17.36877 -17.09365 -16.80913 -16.47264 -15.96667 -15.93428 -15.59187 -15.37395 -14.99982 -14.90388 -14.66460 -14.57325 -14.17729 -13.71955 -13.65836 -13.46139 -13.42596 -13.36027 -12.89867 -12.82422 -12.76863 -12.72977 -12.41833 -12.40512 -12.21552 -12.05836 -12.01649 -11.95351 -11.78927 -11.50395 -11.36802 -11.31868 -11.24951 -10.94688 -10.73929 -10.31427 -9.98855 -9.76958 -8.87133 -7.76988 -5.21536 0.45211 0.96162 1.44309 1.46613 1.49613 1.55405 2.11862 2.29965 2.48930 3.03092 3.22097 3.31190 3.45857 3.69648 3.73343 3.82573 3.91239 3.98945 4.06911 4.07993 4.13004 4.26757 4.33592 4.37529 4.40813 4.51306 4.53836 4.62884 4.66285 4.70928 4.71989 4.79307 4.82551 4.83490 5.01406 5.02449 5.03188 5.11679 5.18445 5.18701 5.26325 5.27315 5.28277 5.37132 5.41616 5.45571 5.55203 5.77060 5.78761 5.86025 6.32763 6.40029 6.85102 7.11639 7.12035 7.79780 8.44058 9.24217 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.001762 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.060558 B =15886.252052 C =16546.416922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 H 0.071 0.929 4 C 0.160 3.840 5 N -0.629 5.629 6 C -0.241 4.241 7 H 0.076 0.924 8 C -0.068 4.068 9 N -0.947 5.947 10 Si 0.980 3.020 11 H -0.288 1.288 12 H -0.290 1.290 13 H -0.271 1.271 14 C 0.133 3.867 15 C -0.078 4.078 16 H 0.079 0.921 17 C -0.099 4.099 18 C 0.124 3.876 19 N -0.703 5.703 20 C 0.598 3.402 21 O -0.575 6.575 22 C -0.040 4.040 23 C -0.203 4.203 24 C 0.057 3.943 25 C -0.104 4.104 26 C -0.162 4.162 27 C -0.159 4.159 28 N -0.272 5.272 29 C 0.071 3.929 30 N -0.267 5.267 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.069 0.931 35 H -0.017 1.017 36 H 0.247 0.753 37 H 0.024 0.976 38 H 0.012 0.988 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.416 0.584 44 H 0.154 0.846 45 H 0.147 0.853 46 H 0.086 0.914 47 H 0.124 0.876 48 H 0.124 0.876 49 H 0.087 0.913 50 H 0.104 0.896 51 H 0.124 0.876 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 12.997 33.993 36.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.089 0.911 4 C 0.035 3.965 5 N -0.355 5.355 6 C -0.370 4.370 7 H 0.094 0.906 8 C -0.261 4.261 9 N -0.597 5.597 10 Si 0.808 3.192 11 H -0.215 1.215 12 H -0.216 1.216 13 H -0.196 1.196 14 C 0.008 3.992 15 C -0.097 4.097 16 H 0.098 0.902 17 C -0.137 4.137 18 C 0.000 4.000 19 N -0.354 5.354 20 C 0.384 3.616 21 O -0.453 6.453 22 C -0.198 4.198 23 C -0.231 4.231 24 C -0.068 4.068 25 C -0.123 4.123 26 C -0.199 4.199 27 C -0.196 4.196 28 N -0.061 5.061 29 C -0.067 4.067 30 N -0.105 5.105 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.001 0.999 36 H 0.057 0.943 37 H 0.042 0.958 38 H 0.030 0.970 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.253 0.747 44 H 0.172 0.828 45 H 0.165 0.835 46 H 0.105 0.895 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.106 0.894 50 H 0.122 0.878 51 H 0.142 0.858 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.075 13.197 33.177 35.837 hybrid contribution 0.971 -1.045 -0.957 1.718 sum -2.105 12.152 32.220 34.499 Atomic orbital electron populations 1.21594 0.92910 1.01579 1.02323 1.22476 0.96592 0.98406 0.94574 0.91086 1.21790 0.83550 0.94808 0.96311 1.44849 1.10581 1.78937 1.01124 1.19451 0.91942 1.37395 0.88201 0.90642 1.25639 0.99874 1.02531 0.98030 1.70066 1.24106 1.54802 1.10748 0.85051 0.78694 0.77288 0.78135 1.21460 1.21590 1.19587 1.21565 0.96624 0.97026 0.83970 1.22042 0.95276 0.98289 0.94140 0.90229 1.21622 1.03050 0.97539 0.91517 1.21384 1.01169 0.93566 0.83851 1.45777 1.66693 1.13821 1.09158 1.17190 0.76409 0.85886 0.82134 1.90770 1.52519 1.16904 1.85100 1.21688 1.10865 0.91321 0.95954 1.21507 1.09420 1.00261 0.91891 1.20819 1.03636 0.87341 0.94998 1.20517 1.06608 0.99104 0.86096 1.23182 0.91837 1.01516 1.03381 1.23179 0.98422 0.97588 1.00451 1.45713 1.44618 1.10824 1.04920 1.22665 1.06038 0.74447 1.03564 1.73467 1.20326 1.11936 1.04736 0.90197 0.92825 0.93416 0.91283 0.99874 0.94331 0.95816 0.97020 0.90951 0.88448 0.91374 0.92901 0.74718 0.82823 0.83544 0.89510 0.85802 0.85747 0.89398 0.87765 0.85779 0.87700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.31 71.98 0.67 -3.04 16 2 C -0.10 -3.72 3.09 -9.40 -0.03 -3.75 16 3 H 0.07 2.60 8.05 -2.39 -0.02 2.58 16 4 C 0.16 8.17 5.36 86.85 0.47 8.64 16 5 N -0.63 -34.28 3.39 -691.99 -2.35 -36.63 16 6 C -0.24 -14.25 10.27 84.03 0.86 -13.39 16 7 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 8 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 9 N -0.95 -58.22 10.09 21.65 0.22 -58.00 16 10 Si 0.98 47.47 29.55 68.60 2.03 49.49 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 13 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 14 C 0.13 5.85 6.10 86.73 0.53 6.38 16 15 C -0.08 -2.64 2.42 -9.61 -0.02 -2.67 16 16 H 0.08 2.62 8.04 -2.39 -0.02 2.60 16 17 C -0.10 -2.54 4.73 30.59 0.14 -2.39 16 18 C 0.12 3.41 5.54 86.38 0.48 3.89 16 19 N -0.70 -18.16 5.55 -466.10 -2.59 -20.75 16 20 C 0.60 18.28 7.83 86.75 0.68 18.96 16 21 O -0.57 -21.69 16.93 -3.94 -0.07 -21.75 16 22 C -0.04 -1.05 7.13 42.46 0.30 -0.75 16 23 C -0.20 -4.62 9.86 22.41 0.22 -4.40 16 24 C 0.06 0.91 6.60 41.40 0.27 1.18 16 25 C -0.10 -0.85 5.94 -11.54 -0.07 -0.91 16 26 C -0.16 -1.25 10.05 30.62 0.31 -0.94 16 27 C -0.16 -1.18 10.06 30.62 0.31 -0.87 16 28 N -0.27 -4.20 3.70 -355.94 -1.32 -5.51 16 29 C 0.07 0.31 11.05 127.77 1.41 1.72 16 30 N -0.27 -5.85 11.67 -48.17 -0.56 -6.41 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.44 8.07 -2.38 -0.02 1.42 16 34 H 0.07 4.01 5.87 -2.39 -0.01 4.00 16 35 H -0.02 -0.92 7.98 -2.39 -0.02 -0.94 16 36 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 37 H 0.02 1.03 7.73 -2.39 -0.02 1.02 16 38 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.07 1.87 8.00 -2.39 -0.02 1.85 16 40 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.05 1.70 7.58 -2.38 -0.02 1.68 16 43 H 0.42 8.83 8.20 -92.71 -0.76 8.07 16 44 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 45 H 0.15 0.29 7.16 -2.39 -0.02 0.27 16 46 H 0.09 0.98 7.95 -2.39 -0.02 0.96 16 47 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 49 H 0.09 0.94 7.96 -2.39 -0.02 0.92 16 50 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 51 H 0.12 -0.18 7.12 -2.39 -0.02 -0.20 16 52 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -81.17 420.23 2.51 -78.66 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.15 Total: 16.83 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 7.00 Total: 4.07 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -6.60 Total: -127.30 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.07 Total: -21.75 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.49 kcal Total: -81.17 2.51 -78.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103062471.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.888 kcal (2) G-P(sol) polarization free energy of solvation -81.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds