Wall clock time and date at job start Wed Apr 1 2020 04:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.91716 * 2 1 4 4 C 1.54905 * 111.00873 * 236.09419 * 2 1 3 5 5 N 1.47422 * 104.83322 * 204.91677 * 4 2 1 6 6 C 1.36931 * 125.64974 * 204.15990 * 5 4 2 7 7 H 1.08006 * 120.00126 * 179.97438 * 6 5 4 8 8 C 1.38820 * 120.00138 * 359.96223 * 6 5 4 9 9 N 1.31618 * 119.99610 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00248 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46906 * 89.99893 * 10 8 6 12 12 H 1.48495 * 109.47038 * 210.00277 * 10 8 6 13 13 H 1.48503 * 109.46827 * 330.00148 * 10 8 6 14 14 C 1.47021 * 108.70247 * 24.12986 * 5 4 2 15 15 C 1.54325 * 107.27398 * 358.93792 * 14 5 4 16 16 H 1.08999 * 110.71810 * 96.34650 * 15 14 5 17 17 C 1.52994 * 110.72151 * 219.44585 * 15 14 5 18 18 C 1.52995 * 109.47249 * 293.54286 * 17 15 14 19 19 N 1.46503 * 109.47401 * 180.02562 * 18 17 15 20 20 C 1.34769 * 120.00212 * 180.02562 * 19 18 17 21 21 O 1.21290 * 120.00322 * 359.97438 * 20 19 18 22 22 C 1.50697 * 120.00055 * 180.02562 * 20 19 18 23 23 H 1.08999 * 109.69582 * 299.65167 * 22 20 19 24 24 C 1.53259 * 109.58736 * 179.31583 * 22 20 19 25 25 C 1.53147 * 109.50865 * 189.85555 * 24 22 20 26 26 C 1.53398 * 109.23734 * 69.47740 * 25 24 22 27 27 C 1.51047 * 108.20379 * 311.15987 * 26 25 24 28 28 N 1.30095 * 127.38477 * 196.03125 * 27 26 25 29 29 C 1.34294 * 109.20344 * 179.64535 * 28 27 26 30 30 C 1.34849 * 108.07719 * 0.45569 * 29 28 27 31 31 N 1.35418 * 123.98320 * 15.98092 * 27 26 25 32 32 H 1.08993 * 109.47513 * 296.10326 * 1 2 3 33 33 H 1.09009 * 109.46816 * 56.10386 * 1 2 3 34 34 H 1.09001 * 109.47092 * 176.10011 * 1 2 3 35 35 H 1.08998 * 110.36773 * 86.07406 * 4 2 1 36 36 H 1.09002 * 110.46151 * 323.80270 * 4 2 1 37 37 H 0.96995 * 119.99596 * 180.02562 * 9 8 6 38 38 H 1.08997 * 109.88082 * 239.52023 * 14 5 4 39 39 H 1.08999 * 109.88366 * 118.35957 * 14 5 4 40 40 H 1.09007 * 109.47000 * 173.54285 * 17 15 14 41 41 H 1.08998 * 109.47208 * 53.54586 * 17 15 14 42 42 H 1.09007 * 109.47121 * 60.00073 * 18 17 15 43 43 H 1.08998 * 109.47260 * 300.00268 * 18 17 15 44 44 H 0.97002 * 119.99636 * 0.02562 * 19 18 17 45 45 H 1.09002 * 109.47014 * 69.83966 * 24 22 20 46 46 H 1.09004 * 109.46444 * 309.86830 * 24 22 20 47 47 H 1.09006 * 109.51059 * 309.55461 * 25 24 22 48 48 H 1.08994 * 109.55319 * 189.43402 * 25 24 22 49 49 H 1.08996 * 109.71935 * 191.47962 * 26 25 24 50 50 H 1.09001 * 109.74923 * 70.85385 * 26 25 24 51 51 H 1.08000 * 125.96146 * 180.31437 * 29 28 27 52 52 H 1.08002 * 126.65988 * 179.85635 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4272 -1.2430 -0.7731 6 6 4.4645 -1.5654 -1.6068 7 1 5.4132 -1.8749 -1.1937 8 6 4.2967 -1.4947 -2.9830 9 7 3.1406 -1.1173 -3.4864 10 14 5.7120 -1.9338 -4.1203 11 1 5.6601 -3.3834 -4.4381 12 1 5.6008 -1.1476 -5.3752 13 1 7.0001 -1.6194 -3.4517 14 6 3.4674 -1.2740 0.6962 15 6 2.0861 -0.8078 1.2024 16 1 1.4478 -1.6631 1.4241 17 6 2.2348 0.0878 2.4339 18 6 2.7846 -0.7359 3.6001 19 7 2.9265 0.1215 4.7795 20 6 3.3971 -0.3920 5.9333 21 8 3.7028 -1.5641 5.9954 22 6 3.5425 0.4898 7.1466 23 1 4.2333 1.3042 6.9282 24 6 4.0777 -0.3365 8.3211 25 6 3.9938 0.4896 9.6079 26 6 2.5213 0.6670 9.9995 27 6 1.7604 1.1270 8.7784 28 7 0.5746 1.6608 8.7413 29 6 0.2545 1.9376 7.4668 30 6 1.2814 1.5496 6.6837 31 7 2.2354 1.0398 7.5133 32 1 -0.3634 0.4521 0.9228 33 1 -0.3633 0.5732 -0.8531 34 1 -0.3633 -1.0253 -0.0699 35 1 2.1560 -0.1721 -2.0836 36 1 1.4526 -1.6705 -1.4042 37 1 3.0233 -1.0682 -4.4480 38 1 4.2425 -0.5996 1.0601 39 1 3.6650 -2.2892 1.0403 40 1 1.2616 0.4972 2.7051 41 1 2.9222 0.9033 2.2092 42 1 3.7578 -1.1453 3.3289 43 1 2.0972 -1.5515 3.8248 44 1 2.6817 1.0588 4.7300 45 1 5.1161 -0.6081 8.1310 46 1 3.4800 -1.2414 8.4308 47 1 4.4469 1.4673 9.4431 48 1 4.5236 -0.0268 10.4083 49 1 2.4379 1.4149 10.7880 50 1 2.1161 -0.2826 10.3491 51 1 -0.6659 2.3897 7.1278 52 1 1.3390 1.6312 5.6083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103085274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:32 Heat of formation + Delta-G solvation = 40.206779 kcal Electronic energy + Delta-G solvation = -30656.930697 eV Core-core repulsion = 26657.546076 eV Total energy + Delta-G solvation = -3999.384621 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.82269 -40.09318 -38.27932 -36.82280 -35.50726 -33.92091 -33.21016 -31.23082 -30.70724 -30.24168 -29.05054 -27.15673 -25.84057 -25.19612 -23.99506 -22.68174 -22.28762 -21.64792 -21.21796 -19.75068 -19.43080 -19.29945 -17.94796 -17.51784 -16.90250 -16.21398 -15.63996 -15.60787 -15.20978 -15.05323 -14.77885 -14.64893 -14.27662 -14.16094 -13.86392 -13.78432 -13.47155 -13.17596 -13.01548 -12.86817 -12.49715 -12.16305 -12.09793 -11.85016 -11.74940 -11.61967 -11.57163 -11.53883 -11.17877 -11.08583 -10.89407 -10.78291 -10.70579 -10.24726 -10.13507 -9.96179 -9.89492 -9.79714 -9.74290 -9.37177 -9.35308 -8.66960 -8.65865 -6.83467 -5.65984 -3.07588 1.60148 1.81035 2.66125 2.67888 2.84819 3.38811 3.43767 3.45580 3.72735 3.97163 4.07067 4.16591 4.32018 4.47929 4.57753 4.72581 4.79623 4.82808 4.99533 5.12250 5.18475 5.20317 5.26938 5.34223 5.36769 5.41847 5.46950 5.51239 5.52037 5.59211 5.67449 5.69471 5.82866 5.88869 5.90879 6.02777 6.14093 6.19154 6.22245 6.27336 6.42656 6.51751 6.59001 6.65193 6.75047 6.79227 6.97370 7.03056 7.53717 7.62786 7.70929 7.77880 7.85897 8.36046 9.21852 9.82756 10.47994 11.37659 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.002090 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.544743 B =13393.124916 C =14537.330621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.068 0.932 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.222 4.222 7 H 0.076 0.924 8 C -0.012 4.012 9 N -0.922 5.922 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.140 3.860 15 C -0.092 4.092 16 H 0.073 0.927 17 C -0.117 4.117 18 C 0.115 3.885 19 N -0.721 5.721 20 C 0.508 3.492 21 O -0.518 6.518 22 C 0.117 3.883 23 H 0.116 0.884 24 C -0.118 4.118 25 C -0.125 4.125 26 C -0.036 4.036 27 C 0.215 3.785 28 N -0.487 5.487 29 C -0.022 4.022 30 C -0.060 4.060 31 N -0.450 5.450 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.105 0.895 36 H 0.012 0.988 37 H 0.252 0.748 38 H 0.021 0.979 39 H 0.019 0.981 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.398 0.602 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.091 0.909 51 H 0.173 0.827 52 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 7.543 24.944 26.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.086 0.914 4 C 0.033 3.967 5 N -0.331 5.331 6 C -0.350 4.350 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.571 5.571 10 Si 0.744 3.256 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.014 3.986 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.155 4.155 18 C -0.008 4.008 19 N -0.374 5.374 20 C 0.290 3.710 21 O -0.392 6.392 22 C 0.011 3.989 23 H 0.133 0.867 24 C -0.156 4.156 25 C -0.163 4.163 26 C -0.075 4.075 27 C -0.047 4.047 28 N -0.206 5.206 29 C -0.170 4.170 30 C -0.192 4.192 31 N -0.136 5.136 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.030 0.970 37 H 0.062 0.938 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.235 0.765 45 H 0.115 0.885 46 H 0.106 0.894 47 H 0.091 0.909 48 H 0.107 0.893 49 H 0.115 0.885 50 H 0.110 0.890 51 H 0.190 0.810 52 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.355 6.749 25.333 26.323 hybrid contribution 1.014 0.056 -1.663 1.948 sum -1.341 6.805 23.670 24.666 Atomic orbital electron populations 1.21638 0.95705 1.01380 1.00399 1.22630 0.94415 0.99301 0.97011 0.91378 1.21976 0.84084 0.95880 0.94744 1.44499 1.10526 1.78974 0.99119 1.19081 0.91037 1.37652 0.87242 0.90579 1.24790 0.97298 1.02058 0.96624 1.69801 1.22411 1.53890 1.11004 0.86079 0.81228 0.77864 0.80384 1.21632 1.21648 1.20732 1.21363 0.93632 0.97170 0.86474 1.22139 0.98206 0.97620 0.93213 0.90861 1.21796 1.00989 0.98718 0.93963 1.21621 1.02435 0.93370 0.83336 1.46356 1.65518 1.14123 1.11443 1.20317 0.78136 0.88391 0.84117 1.90776 1.48317 1.15971 1.84102 1.21813 0.84190 0.97456 0.95452 0.86663 1.21781 1.03563 0.98626 0.91584 1.21719 0.95935 1.01042 0.97588 1.20253 0.92730 1.02658 0.91829 1.23396 0.92176 1.03025 0.86132 1.70107 1.11289 1.17180 1.21991 1.22381 1.00028 1.06041 0.88525 1.22613 0.91597 1.07452 0.97519 1.45271 1.14107 1.46376 1.07802 0.93829 0.92842 0.92998 0.87750 0.97017 0.93763 0.96071 0.96313 0.91521 0.91140 0.90507 0.91167 0.76535 0.88465 0.89374 0.90939 0.89276 0.88484 0.89036 0.81012 0.80907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.31 37.16 0.35 -1.63 16 2 C -0.11 -2.02 3.09 -88.47 -0.27 -2.30 16 3 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 4 C 0.16 3.77 5.36 -2.53 -0.01 3.75 16 5 N -0.61 -15.45 3.39 -170.08 -0.58 -16.02 16 6 C -0.22 -6.20 10.27 -15.06 -0.15 -6.36 16 7 H 0.08 2.07 7.83 -52.48 -0.41 1.65 16 8 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 9 N -0.92 -26.84 10.09 55.49 0.56 -26.28 16 10 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.14 2.84 5.99 -3.06 -0.02 2.82 16 15 C -0.09 -1.48 2.45 -88.79 -0.22 -1.70 16 16 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 17 C -0.12 -1.38 4.71 -26.74 -0.13 -1.51 16 18 C 0.11 1.36 5.52 -4.04 -0.02 1.33 16 19 N -0.72 -6.93 4.89 -60.29 -0.29 -7.23 16 20 C 0.51 5.49 7.19 -10.99 -0.08 5.41 16 21 O -0.52 -7.55 15.84 5.55 0.09 -7.46 16 22 C 0.12 0.92 3.44 -68.97 -0.24 0.68 16 23 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 24 C -0.12 -0.79 4.68 -26.52 -0.12 -0.92 16 25 C -0.12 -0.58 5.96 -26.45 -0.16 -0.74 16 26 C -0.04 -0.23 6.33 -27.51 -0.17 -0.40 16 27 C 0.21 2.12 7.65 -155.24 -1.19 0.93 16 28 N -0.49 -5.76 11.24 -10.62 -0.12 -5.88 16 29 C -0.02 -0.23 11.87 -17.68 -0.21 -0.44 16 30 C -0.06 -0.53 10.44 -16.76 -0.18 -0.71 16 31 N -0.45 -4.06 2.98 -107.92 -0.32 -4.38 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.10 2.82 5.87 -51.93 -0.30 2.52 16 36 H 0.01 0.30 7.99 -51.93 -0.41 -0.11 16 37 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.02 0.43 7.76 -51.93 -0.40 0.02 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 42 H 0.08 1.05 7.49 -51.93 -0.39 0.66 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.40 2.85 6.01 -40.82 -0.25 2.60 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.75 7.77 -51.93 -0.40 0.35 16 47 H 0.07 0.31 8.12 -51.93 -0.42 -0.12 16 48 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 52 H 0.17 1.15 5.77 -52.49 -0.30 0.85 16 LS Contribution 403.67 15.07 6.08 6.08 Total: -1.00 -34.44 403.67 -11.28 -45.72 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -8.75 Total: 0.57 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.92 Total: -2.21 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.75 Total: -59.79 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.09 Total: -7.46 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.44 -11.28 -45.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103085274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.922 kcal (2) G-P(sol) polarization free energy of solvation -34.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds