Wall clock time and date at job start Wed Apr 1 2020 04:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.91716 * 2 1 4 4 C 1.54905 * 111.00873 * 236.09419 * 2 1 3 5 5 N 1.47422 * 104.83322 * 204.91677 * 4 2 1 6 6 C 1.36931 * 125.64974 * 204.15990 * 5 4 2 7 7 H 1.08006 * 120.00126 * 179.97438 * 6 5 4 8 8 C 1.38820 * 120.00138 * 359.96223 * 6 5 4 9 9 N 1.31618 * 119.99610 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00248 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46906 * 89.99893 * 10 8 6 12 12 H 1.48495 * 109.47038 * 210.00277 * 10 8 6 13 13 H 1.48503 * 109.46827 * 330.00148 * 10 8 6 14 14 C 1.47021 * 108.70247 * 24.12986 * 5 4 2 15 15 C 1.54325 * 107.27398 * 358.93792 * 14 5 4 16 16 H 1.08999 * 110.71810 * 96.34650 * 15 14 5 17 17 C 1.52994 * 110.72151 * 219.44585 * 15 14 5 18 18 C 1.52995 * 109.47249 * 293.54286 * 17 15 14 19 19 N 1.46503 * 109.47401 * 180.02562 * 18 17 15 20 20 C 1.34769 * 120.00212 * 180.02562 * 19 18 17 21 21 O 1.21290 * 120.00322 * 359.97438 * 20 19 18 22 22 C 1.50697 * 120.00055 * 180.02562 * 20 19 18 23 23 H 1.08999 * 109.69582 * 299.65167 * 22 20 19 24 24 C 1.53259 * 109.58736 * 179.31583 * 22 20 19 25 25 C 1.53147 * 109.50865 * 189.85555 * 24 22 20 26 26 C 1.53398 * 109.23734 * 69.47740 * 25 24 22 27 27 C 1.51047 * 108.20379 * 311.15987 * 26 25 24 28 28 N 1.30095 * 127.38477 * 196.03125 * 27 26 25 29 29 C 1.34294 * 109.20344 * 179.64535 * 28 27 26 30 30 C 1.34849 * 108.07719 * 0.45569 * 29 28 27 31 31 N 1.35418 * 123.98320 * 15.98092 * 27 26 25 32 32 H 1.08993 * 109.47513 * 296.10326 * 1 2 3 33 33 H 1.09009 * 109.46816 * 56.10386 * 1 2 3 34 34 H 1.09001 * 109.47092 * 176.10011 * 1 2 3 35 35 H 1.08998 * 110.36773 * 86.07406 * 4 2 1 36 36 H 1.09002 * 110.46151 * 323.80270 * 4 2 1 37 37 H 0.96995 * 119.99596 * 180.02562 * 9 8 6 38 38 H 1.08997 * 109.88082 * 239.52023 * 14 5 4 39 39 H 1.08999 * 109.88366 * 118.35957 * 14 5 4 40 40 H 1.09007 * 109.47000 * 173.54285 * 17 15 14 41 41 H 1.08998 * 109.47208 * 53.54586 * 17 15 14 42 42 H 1.09007 * 109.47121 * 60.00073 * 18 17 15 43 43 H 1.08998 * 109.47260 * 300.00268 * 18 17 15 44 44 H 0.97002 * 119.99636 * 0.02562 * 19 18 17 45 45 H 1.09002 * 109.47014 * 69.83966 * 24 22 20 46 46 H 1.09004 * 109.46444 * 309.86830 * 24 22 20 47 47 H 1.09006 * 109.51059 * 309.55461 * 25 24 22 48 48 H 1.08994 * 109.55319 * 189.43402 * 25 24 22 49 49 H 1.08996 * 109.71935 * 191.47962 * 26 25 24 50 50 H 1.09001 * 109.74923 * 70.85385 * 26 25 24 51 51 H 1.08000 * 125.96146 * 180.31437 * 29 28 27 52 52 H 1.08002 * 126.65988 * 179.85635 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4272 -1.2430 -0.7731 6 6 4.4645 -1.5654 -1.6068 7 1 5.4132 -1.8749 -1.1937 8 6 4.2967 -1.4947 -2.9830 9 7 3.1406 -1.1173 -3.4864 10 14 5.7120 -1.9338 -4.1203 11 1 5.6601 -3.3834 -4.4381 12 1 5.6008 -1.1476 -5.3752 13 1 7.0001 -1.6194 -3.4517 14 6 3.4674 -1.2740 0.6962 15 6 2.0861 -0.8078 1.2024 16 1 1.4478 -1.6631 1.4241 17 6 2.2348 0.0878 2.4339 18 6 2.7846 -0.7359 3.6001 19 7 2.9265 0.1215 4.7795 20 6 3.3971 -0.3920 5.9333 21 8 3.7028 -1.5641 5.9954 22 6 3.5425 0.4898 7.1466 23 1 4.2333 1.3042 6.9282 24 6 4.0777 -0.3365 8.3211 25 6 3.9938 0.4896 9.6079 26 6 2.5213 0.6670 9.9995 27 6 1.7604 1.1270 8.7784 28 7 0.5746 1.6608 8.7413 29 6 0.2545 1.9376 7.4668 30 6 1.2814 1.5496 6.6837 31 7 2.2354 1.0398 7.5133 32 1 -0.3634 0.4521 0.9228 33 1 -0.3633 0.5732 -0.8531 34 1 -0.3633 -1.0253 -0.0699 35 1 2.1560 -0.1721 -2.0836 36 1 1.4526 -1.6705 -1.4042 37 1 3.0233 -1.0682 -4.4480 38 1 4.2425 -0.5996 1.0601 39 1 3.6650 -2.2892 1.0403 40 1 1.2616 0.4972 2.7051 41 1 2.9222 0.9033 2.2092 42 1 3.7578 -1.1453 3.3289 43 1 2.0972 -1.5515 3.8248 44 1 2.6817 1.0588 4.7300 45 1 5.1161 -0.6081 8.1310 46 1 3.4800 -1.2414 8.4308 47 1 4.4469 1.4673 9.4431 48 1 4.5236 -0.0268 10.4083 49 1 2.4379 1.4149 10.7880 50 1 2.1161 -0.2826 10.3491 51 1 -0.6659 2.3897 7.1278 52 1 1.3390 1.6312 5.6083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103085274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:30 Heat of formation + Delta-G solvation = 19.239908 kcal Electronic energy + Delta-G solvation = -30657.839889 eV Core-core repulsion = 26657.546076 eV Total energy + Delta-G solvation = -4000.293813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.48950 -40.96838 -39.77648 -37.45215 -36.57552 -35.16285 -34.36924 -32.55671 -32.40786 -30.87554 -29.71128 -28.56060 -27.49646 -26.23794 -25.22767 -23.58707 -23.22936 -22.44468 -22.09003 -21.32875 -20.70755 -20.00229 -18.89911 -18.71514 -18.18766 -17.25526 -16.97929 -16.44831 -16.32468 -15.97828 -15.73945 -15.55869 -15.34083 -15.24789 -14.80811 -14.68858 -14.62016 -14.44504 -14.13783 -13.79523 -13.69638 -13.50588 -13.37285 -13.05833 -12.90669 -12.79818 -12.74411 -12.44495 -12.35954 -12.23038 -12.05230 -12.04335 -11.96252 -11.79985 -11.56033 -11.40202 -11.28287 -11.03862 -10.93362 -10.75591 -10.54748 -10.27479 -9.33601 -8.88859 -7.78566 -5.23152 0.89012 1.09080 1.43857 1.45770 1.54476 1.88639 1.95909 2.13762 2.47700 3.11299 3.29900 3.42109 3.47599 3.64184 3.66734 3.72413 3.79570 3.89031 4.03800 4.11647 4.18533 4.24452 4.29837 4.41047 4.48740 4.53804 4.60192 4.62997 4.68512 4.77432 4.78616 4.81620 4.88139 4.97218 4.97581 5.00063 5.06923 5.09061 5.15769 5.21753 5.24009 5.27568 5.30267 5.40138 5.44442 5.53860 5.75605 5.77433 5.84944 6.09774 6.25787 6.31577 6.92073 7.09362 7.10486 7.78609 8.42315 9.22573 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.002090 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.544743 B =13393.124916 C =14537.330621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 H 0.073 0.927 4 C 0.158 3.842 5 N -0.630 5.630 6 C -0.240 4.240 7 H 0.077 0.923 8 C -0.068 4.068 9 N -0.948 5.948 10 Si 0.979 3.021 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.270 1.270 14 C 0.134 3.866 15 C -0.078 4.078 16 H 0.076 0.924 17 C -0.101 4.101 18 C 0.123 3.877 19 N -0.709 5.709 20 C 0.505 3.495 21 O -0.560 6.560 22 C 0.122 3.878 23 H 0.145 0.855 24 C -0.117 4.117 25 C -0.114 4.114 26 C -0.038 4.038 27 C 0.204 3.796 28 N -0.524 5.524 29 C -0.045 4.045 30 C -0.059 4.059 31 N -0.451 5.451 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.068 0.932 36 H -0.019 1.019 37 H 0.247 0.753 38 H 0.027 0.973 39 H 0.010 0.990 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.413 0.587 45 H 0.106 0.894 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.110 0.890 49 H 0.107 0.893 50 H 0.092 0.908 51 H 0.186 0.814 52 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 9.045 26.837 28.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.092 0.908 4 C 0.033 3.967 5 N -0.356 5.356 6 C -0.369 4.369 7 H 0.095 0.905 8 C -0.261 4.261 9 N -0.598 5.598 10 Si 0.807 3.193 11 H -0.215 1.215 12 H -0.217 1.217 13 H -0.194 1.194 14 C 0.009 3.991 15 C -0.098 4.098 16 H 0.094 0.906 17 C -0.139 4.139 18 C -0.001 4.001 19 N -0.362 5.362 20 C 0.289 3.711 21 O -0.437 6.437 22 C 0.017 3.983 23 H 0.162 0.838 24 C -0.155 4.155 25 C -0.151 4.151 26 C -0.077 4.077 27 C -0.058 4.058 28 N -0.244 5.244 29 C -0.192 4.192 30 C -0.192 4.192 31 N -0.137 5.137 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.086 0.914 36 H -0.001 1.001 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.028 0.972 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.253 0.747 45 H 0.124 0.876 46 H 0.084 0.916 47 H 0.102 0.898 48 H 0.129 0.871 49 H 0.126 0.874 50 H 0.110 0.890 51 H 0.203 0.797 52 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.935 8.286 27.256 28.554 hybrid contribution 0.875 -0.463 -2.251 2.459 sum -1.060 7.823 25.005 26.222 Atomic orbital electron populations 1.21602 0.93024 1.01452 1.02414 1.22464 0.96479 0.98447 0.94493 0.90834 1.21799 0.83591 0.94800 0.96474 1.44857 1.10504 1.78975 1.01244 1.19442 0.91919 1.37415 0.88158 0.90550 1.25637 0.99806 1.02533 0.98094 1.70068 1.24108 1.54824 1.10754 0.85066 0.78781 0.77253 0.78174 1.21546 1.21699 1.19440 1.21570 0.96697 0.96949 0.83883 1.22038 0.95178 0.98235 0.94332 0.90589 1.21650 1.03053 0.97647 0.91563 1.21359 1.01053 0.93522 0.84159 1.46194 1.64892 1.14623 1.10536 1.20846 0.77112 0.88148 0.84948 1.90763 1.50147 1.17967 1.84858 1.21924 0.84220 0.97841 0.94363 0.83772 1.21810 1.03492 0.97958 0.92276 1.21695 0.94952 1.01465 0.97020 1.20424 0.93437 1.02874 0.90919 1.24006 0.92009 1.02492 0.87324 1.70086 1.12556 1.18617 1.23126 1.22759 1.01172 1.06809 0.88440 1.22963 0.91144 1.06613 0.98432 1.45375 1.14447 1.46136 1.07707 0.89951 0.92949 0.93666 0.91362 1.00103 0.94351 0.95465 0.97246 0.88203 0.90428 0.92675 0.92028 0.74748 0.87595 0.91592 0.89811 0.87128 0.87428 0.88952 0.79727 0.78710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.31 71.98 0.67 -2.80 16 2 C -0.10 -3.40 3.09 -9.40 -0.03 -3.43 16 3 H 0.07 2.46 8.05 -2.38 -0.02 2.44 16 4 C 0.16 7.77 5.36 86.85 0.47 8.24 16 5 N -0.63 -32.91 3.39 -692.00 -2.35 -35.26 16 6 C -0.24 -13.75 10.27 84.04 0.86 -12.89 16 7 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 8 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 9 N -0.95 -57.06 10.09 21.65 0.22 -56.84 16 10 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 14 C 0.13 5.46 5.99 86.73 0.52 5.98 16 15 C -0.08 -2.39 2.45 -9.61 -0.02 -2.41 16 16 H 0.08 2.30 8.04 -2.39 -0.02 2.28 16 17 C -0.10 -2.06 4.71 30.59 0.14 -1.91 16 18 C 0.12 2.64 5.52 86.38 0.48 3.12 16 19 N -0.71 -11.75 4.89 -463.06 -2.26 -14.01 16 20 C 0.51 10.02 7.19 87.66 0.63 10.65 16 21 O -0.56 -16.02 15.84 -3.06 -0.05 -16.06 16 22 C 0.12 1.62 3.44 44.34 0.15 1.78 16 23 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 24 C -0.12 -1.36 4.68 30.73 0.14 -1.21 16 25 C -0.11 -0.75 5.96 30.78 0.18 -0.57 16 26 C -0.04 -0.41 6.33 30.09 0.19 -0.22 16 27 C 0.20 3.73 7.65 138.24 1.06 4.78 16 28 N -0.52 -11.93 11.24 -187.51 -2.11 -14.03 16 29 C -0.05 -0.86 11.87 83.54 0.99 0.14 16 30 C -0.06 -0.92 10.44 83.22 0.87 -0.05 16 31 N -0.45 -7.17 2.98 -495.35 -1.47 -8.64 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.04 1.29 8.08 -2.39 -0.02 1.27 16 35 H 0.07 3.85 5.87 -2.39 -0.01 3.84 16 36 H -0.02 -1.02 7.99 -2.39 -0.02 -1.04 16 37 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 38 H 0.03 1.08 7.76 -2.39 -0.02 1.06 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.08 1.54 8.06 -2.39 -0.02 1.53 16 42 H 0.05 1.45 7.49 -2.38 -0.02 1.43 16 43 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.41 4.35 6.01 -92.71 -0.56 3.79 16 45 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.07 1.08 7.77 -2.39 -0.02 1.06 16 47 H 0.08 0.41 8.12 -2.38 -0.02 0.40 16 48 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 49 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.19 2.67 8.06 -2.91 -0.02 2.65 16 52 H 0.20 1.88 5.77 -2.91 -0.02 1.87 16 Total: -1.00 -79.07 403.67 2.13 -76.94 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.35 Total: 13.94 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 7.77 Total: 5.72 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -7.98 Total: -128.79 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.05 Total: -16.06 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -79.07 2.13 -76.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103085274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.182 kcal (2) G-P(sol) polarization free energy of solvation -79.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds