Wall clock time and date at job start Wed Apr 1 2020 04:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 110.88697 * 2 1 4 4 C 1.54904 * 111.00457 * 236.10974 * 2 1 3 5 5 N 1.47427 * 104.83237 * 204.87980 * 4 2 1 6 6 C 1.36940 * 125.64919 * 204.09411 * 5 4 2 7 7 H 1.07997 * 119.99712 * 163.17943 * 6 5 4 8 8 C 1.38811 * 119.99780 * 343.17664 * 6 5 4 9 9 N 1.31618 * 120.00193 * 331.90574 * 8 6 5 10 10 Si 1.86805 * 119.99441 * 151.90365 * 8 6 5 11 11 H 1.48504 * 109.46600 * 180.02562 * 10 8 6 12 12 H 1.48502 * 109.46744 * 60.00357 * 10 8 6 13 13 H 1.48496 * 109.47340 * 300.00244 * 10 8 6 14 14 C 1.47028 * 108.70257 * 24.35837 * 5 4 2 15 15 C 1.54335 * 107.26426 * 358.58751 * 14 5 4 16 16 H 1.08999 * 110.67019 * 96.52029 * 15 14 5 17 17 C 1.53000 * 110.84950 * 219.67313 * 15 14 5 18 18 C 1.52999 * 109.46993 * 288.69341 * 17 15 14 19 19 N 1.46498 * 109.46959 * 180.02562 * 18 17 15 20 20 C 1.34777 * 119.99656 * 180.02562 * 19 18 17 21 21 O 1.21274 * 120.00276 * 359.97438 * 20 19 18 22 22 C 1.50707 * 119.99838 * 179.97438 * 20 19 18 23 23 H 1.08997 * 109.71875 * 59.38060 * 22 20 19 24 24 C 1.53438 * 109.72269 * 179.97438 * 22 20 19 25 25 C 1.53152 * 109.19107 * 168.23368 * 24 22 20 26 26 C 1.53246 * 109.55226 * 290.56332 * 25 24 22 27 27 N 1.46592 * 108.79944 * 50.57996 * 26 25 24 28 28 N 1.39655 * 127.54985 * 162.67057 * 27 26 25 29 29 C 1.31028 * 108.12522 * 180.11128 * 28 27 26 30 30 C 1.40056 * 108.25603 * 359.95396 * 29 28 27 31 31 C 1.34753 * 107.79583 * 359.97438 * 30 29 28 32 32 H 1.08997 * 109.47279 * 182.43191 * 1 2 3 33 33 H 1.09004 * 109.47197 * 302.43419 * 1 2 3 34 34 H 1.09005 * 109.46596 * 62.43381 * 1 2 3 35 35 H 1.09004 * 110.36771 * 86.04552 * 4 2 1 36 36 H 1.08998 * 110.46431 * 323.76318 * 4 2 1 37 37 H 0.96999 * 120.00076 * 353.96451 * 9 8 6 38 38 H 1.09005 * 109.88093 * 118.12912 * 14 5 4 39 39 H 1.08998 * 109.88063 * 239.29547 * 14 5 4 40 40 H 1.09005 * 109.46935 * 48.69173 * 17 15 14 41 41 H 1.09000 * 109.47159 * 168.69118 * 17 15 14 42 42 H 1.09004 * 109.46643 * 299.99878 * 18 17 15 43 43 H 1.09000 * 109.47350 * 59.99893 * 18 17 15 44 44 H 0.96996 * 120.00010 * 359.97438 * 19 18 17 45 45 H 1.08996 * 109.51805 * 288.15230 * 24 22 20 46 46 H 1.09004 * 109.51911 * 48.31777 * 24 22 20 47 47 H 1.08999 * 109.45707 * 50.59029 * 25 24 22 48 48 H 1.09001 * 109.45662 * 170.54114 * 25 24 22 49 49 H 1.09003 * 109.58014 * 170.37196 * 26 25 24 50 50 H 1.08994 * 109.58804 * 290.77850 * 26 25 24 51 51 H 1.07999 * 125.87184 * 179.97438 * 29 28 27 52 52 H 1.08000 * 126.10278 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8064 -1.2004 5 7 3.4276 -1.2421 -0.7739 6 6 4.4644 -1.5652 -1.6081 7 1 5.4728 -1.6091 -1.2240 8 6 4.2191 -1.8364 -2.9472 9 7 3.0539 -2.3239 -3.3172 10 14 5.5430 -1.5095 -4.2239 11 1 5.0351 -1.8796 -5.5694 12 1 6.7462 -2.3205 -3.9081 13 1 5.8997 -0.0681 -4.2092 14 6 3.4667 -1.2785 0.6954 15 6 2.0869 -0.8077 1.2021 16 1 1.4464 -1.6615 1.4230 17 6 2.2357 0.0879 2.4337 18 6 2.6666 -0.7602 3.6319 19 7 2.8084 0.0972 4.8113 20 6 3.1829 -0.4361 5.9910 21 8 3.4021 -1.6258 6.0764 22 6 3.3293 0.4460 7.2042 23 1 2.3796 0.9353 7.4199 24 6 3.7614 -0.3990 8.4098 25 6 4.1894 0.5309 9.5489 26 6 5.5003 1.2308 9.1746 27 7 5.3556 1.8232 7.8415 28 7 6.1519 2.8110 7.2581 29 6 5.6820 3.0587 6.0603 30 6 4.5712 2.2331 5.8454 31 6 4.3937 1.4852 6.9522 32 1 -0.3634 -1.0267 0.0436 33 1 -0.3634 0.5512 0.8674 34 1 -0.3633 0.4756 -0.9111 35 1 2.1555 -0.1717 -2.0838 36 1 1.4530 -1.6705 -1.4042 37 1 2.3987 -2.5757 -2.6477 38 1 3.6616 -2.2954 1.0360 39 1 4.2431 -0.6071 1.0623 40 1 2.9891 0.8512 2.2390 41 1 1.2812 0.5669 2.6520 42 1 1.9131 -1.5235 3.8265 43 1 3.6211 -1.2392 3.4136 44 1 2.6335 1.0488 4.7429 45 1 2.9266 -1.0177 8.7388 46 1 4.5987 -1.0368 8.1262 47 1 3.4143 1.2782 9.7182 48 1 4.3360 -0.0523 10.4580 49 1 5.7165 2.0142 9.9010 50 1 6.3127 0.5042 9.1653 51 1 6.0826 3.7758 5.3591 52 1 3.9650 2.2016 4.9522 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103159270.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:41 Heat of formation + Delta-G solvation = 47.460079 kcal Electronic energy + Delta-G solvation = -30666.604440 eV Core-core repulsion = 26667.534346 eV Total energy + Delta-G solvation = -3999.070094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.03201 -39.85716 -38.39127 -36.79462 -35.37661 -33.63440 -33.05909 -31.24431 -30.71606 -30.50816 -28.68298 -27.02090 -25.86334 -25.22562 -23.83615 -22.67430 -22.11632 -21.41964 -21.03960 -19.84439 -19.46760 -19.28614 -17.62087 -17.38253 -17.06472 -16.19120 -15.83604 -15.64466 -15.12434 -14.89866 -14.64179 -14.43957 -14.29290 -13.98617 -13.72490 -13.66429 -13.51668 -13.28438 -13.04481 -12.84284 -12.52381 -12.33945 -12.19016 -11.89476 -11.80662 -11.68410 -11.60093 -11.51485 -11.23880 -11.02851 -10.96989 -10.68168 -10.48612 -10.29981 -10.14031 -10.03562 -9.91820 -9.79894 -9.48675 -9.42507 -9.19604 -8.85875 -8.35354 -6.87461 -6.05001 -3.08733 1.47449 2.06199 2.41727 2.53982 2.95655 3.53181 3.56880 3.74773 3.90608 3.96964 4.07891 4.21036 4.54757 4.63182 4.69081 4.69758 4.73558 4.81927 5.00793 5.03065 5.13109 5.14665 5.18615 5.26310 5.30824 5.36458 5.38642 5.48934 5.50444 5.58338 5.63245 5.70448 5.74254 5.83093 5.88177 5.99532 6.09035 6.15085 6.21656 6.25167 6.34417 6.35761 6.43226 6.55927 6.61095 6.70048 6.91465 7.04962 7.13949 7.26700 7.41133 7.86104 7.97434 8.54527 9.08428 9.87285 10.43855 11.27633 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014865 B = 0.002214 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.188463 B =12645.729363 C =13401.692608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 H 0.072 0.928 4 C 0.151 3.849 5 N -0.604 5.604 6 C -0.335 4.335 7 H 0.063 0.937 8 C -0.027 4.027 9 N -0.918 5.918 10 Si 1.063 2.937 11 H -0.285 1.285 12 H -0.293 1.293 13 H -0.294 1.294 14 C 0.139 3.861 15 C -0.092 4.092 16 H 0.074 0.926 17 C -0.116 4.116 18 C 0.117 3.883 19 N -0.723 5.723 20 C 0.526 3.474 21 O -0.531 6.531 22 C -0.046 4.046 23 H 0.120 0.880 24 C -0.109 4.109 25 C -0.135 4.135 26 C 0.130 3.870 27 N -0.364 5.364 28 N -0.291 5.291 29 C 0.049 3.951 30 C -0.263 4.263 31 C 0.087 3.913 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.025 0.975 37 H 0.268 0.732 38 H 0.020 0.980 39 H 0.025 0.975 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.400 0.600 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.098 0.902 49 H 0.094 0.906 50 H 0.085 0.915 51 H 0.187 0.813 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.622 10.489 26.314 28.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 H 0.091 0.909 4 C 0.025 3.975 5 N -0.331 5.331 6 C -0.463 4.463 7 H 0.081 0.919 8 C -0.228 4.228 9 N -0.559 5.559 10 Si 0.892 3.108 11 H -0.211 1.211 12 H -0.220 1.220 13 H -0.222 1.222 14 C 0.014 3.986 15 C -0.111 4.111 16 H 0.092 0.908 17 C -0.154 4.154 18 C -0.006 4.006 19 N -0.375 5.375 20 C 0.310 3.690 21 O -0.407 6.407 22 C -0.069 4.069 23 H 0.137 0.863 24 C -0.147 4.147 25 C -0.174 4.174 26 C 0.009 3.991 27 N -0.148 5.148 28 N -0.112 5.112 29 C -0.136 4.136 30 C -0.292 4.292 31 C -0.041 4.041 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.236 0.764 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.096 0.904 48 H 0.116 0.884 49 H 0.112 0.888 50 H 0.103 0.897 51 H 0.203 0.797 52 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.089 9.810 25.676 27.566 hybrid contribution -0.893 0.261 0.944 1.325 sum -2.982 10.071 26.621 28.618 Atomic orbital electron populations 1.21674 0.95345 1.01487 1.00878 1.22427 0.94573 0.99177 0.96297 0.90931 1.21561 0.86694 0.95074 0.94167 1.44555 1.10534 1.78184 0.99811 1.19738 0.86689 1.47345 0.92515 0.91869 1.25721 1.02062 0.97866 0.97162 1.70777 1.08851 1.38637 1.37620 0.83555 0.74605 0.76193 0.76397 1.21102 1.22043 1.22157 1.21400 0.93490 0.97397 0.86353 1.22143 0.98262 0.97545 0.93167 0.90755 1.21780 1.01569 0.98480 0.93607 1.21521 1.02367 0.93287 0.83425 1.46195 1.69482 1.12317 1.09508 1.20017 0.76749 0.88303 0.83953 1.90738 1.49558 1.15684 1.84738 1.20176 0.97671 0.93688 0.95375 0.86280 1.21546 1.03706 0.97220 0.92262 1.21992 0.96249 0.99473 0.99658 1.21856 0.99411 0.97831 0.80022 1.48683 1.22213 1.30480 1.13422 1.77328 1.16874 1.06644 1.10332 1.23961 0.95401 0.99889 0.94362 1.21134 1.04257 1.03723 1.00108 1.20469 0.93489 0.98359 0.91772 0.92818 0.93342 0.92775 0.93387 0.95688 0.92035 0.96155 0.95749 0.91043 0.91473 0.91347 0.90866 0.76393 0.89408 0.89803 0.90440 0.88383 0.88787 0.89656 0.79656 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.30 37.16 0.35 -1.56 16 2 C -0.11 -1.80 3.09 -88.47 -0.27 -2.08 16 3 H 0.07 1.22 8.05 -51.93 -0.42 0.81 16 4 C 0.15 3.50 4.77 -2.53 -0.01 3.48 16 5 N -0.60 -15.60 3.29 -170.06 -0.56 -16.16 16 6 C -0.34 -9.71 10.02 -15.06 -0.15 -9.86 16 7 H 0.06 1.84 7.97 -52.49 -0.42 1.42 16 8 C -0.03 -0.78 5.08 -17.43 -0.09 -0.86 16 9 N -0.92 -28.18 12.93 55.49 0.72 -27.47 16 10 Si 1.06 25.87 30.00 -169.99 -5.10 20.77 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 14 C 0.14 2.92 6.24 -3.06 -0.02 2.90 16 15 C -0.09 -1.47 2.39 -88.77 -0.21 -1.68 16 16 H 0.07 1.18 8.01 -51.93 -0.42 0.77 16 17 C -0.12 -1.38 4.73 -26.73 -0.13 -1.51 16 18 C 0.12 1.42 5.56 -4.04 -0.02 1.40 16 19 N -0.72 -7.21 4.96 -60.29 -0.30 -7.51 16 20 C 0.53 5.92 7.06 -10.98 -0.08 5.84 16 21 O -0.53 -8.10 15.81 5.56 0.09 -8.01 16 22 C -0.05 -0.37 2.91 -92.61 -0.27 -0.64 16 23 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 24 C -0.11 -0.77 4.76 -26.43 -0.13 -0.90 16 25 C -0.14 -0.62 5.93 -26.53 -0.16 -0.78 16 26 C 0.13 0.85 7.28 -3.86 -0.03 0.82 16 27 N -0.36 -3.66 4.04 -56.95 -0.23 -3.89 16 28 N -0.29 -3.42 12.62 30.70 0.39 -3.03 16 29 C 0.05 0.50 12.03 -17.21 -0.21 0.30 16 30 C -0.26 -2.54 9.82 -40.14 -0.39 -2.94 16 31 C 0.09 0.84 6.11 -82.22 -0.50 0.33 16 32 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 1.23 7.95 -51.93 -0.41 0.82 16 36 H 0.03 0.63 6.70 -51.93 -0.35 0.28 16 37 H 0.27 8.26 6.06 -40.82 -0.25 8.01 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.51 7.69 -51.93 -0.40 0.11 16 40 H 0.07 0.86 7.94 -51.93 -0.41 0.45 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.06 7.68 -51.93 -0.40 0.67 16 44 H 0.40 2.98 6.22 -40.82 -0.25 2.72 16 45 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.77 7.70 -51.93 -0.40 0.37 16 47 H 0.08 0.31 8.12 -51.93 -0.42 -0.11 16 48 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.19 1.37 8.06 -52.49 -0.42 0.94 16 52 H 0.15 1.18 5.95 -52.49 -0.31 0.86 16 LS Contribution 405.71 15.07 6.11 6.11 Total: -1.00 -36.55 405.71 -9.93 -46.48 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -8.73 Total: 0.43 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -2.32 Total: -7.74 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.02 Total: -58.05 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.09 Total: -8.01 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.10 Total: 20.77 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.55 -9.93 -46.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103159270.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.938 kcal (2) G-P(sol) polarization free energy of solvation -36.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds