Wall clock time and date at job start Wed Apr 1 2020 04:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 110.88697 * 2 1 4 4 C 1.54904 * 111.00457 * 236.10974 * 2 1 3 5 5 N 1.47427 * 104.83237 * 204.87980 * 4 2 1 6 6 C 1.36940 * 125.64919 * 204.09411 * 5 4 2 7 7 H 1.07997 * 119.99712 * 163.17943 * 6 5 4 8 8 C 1.38811 * 119.99780 * 343.17664 * 6 5 4 9 9 N 1.31618 * 120.00193 * 331.90574 * 8 6 5 10 10 Si 1.86805 * 119.99441 * 151.90365 * 8 6 5 11 11 H 1.48504 * 109.46600 * 180.02562 * 10 8 6 12 12 H 1.48502 * 109.46744 * 60.00357 * 10 8 6 13 13 H 1.48496 * 109.47340 * 300.00244 * 10 8 6 14 14 C 1.47028 * 108.70257 * 24.35837 * 5 4 2 15 15 C 1.54335 * 107.26426 * 358.58751 * 14 5 4 16 16 H 1.08999 * 110.67019 * 96.52029 * 15 14 5 17 17 C 1.53000 * 110.84950 * 219.67313 * 15 14 5 18 18 C 1.52999 * 109.46993 * 288.69341 * 17 15 14 19 19 N 1.46498 * 109.46959 * 180.02562 * 18 17 15 20 20 C 1.34777 * 119.99656 * 180.02562 * 19 18 17 21 21 O 1.21274 * 120.00276 * 359.97438 * 20 19 18 22 22 C 1.50707 * 119.99838 * 179.97438 * 20 19 18 23 23 H 1.08997 * 109.71875 * 59.38060 * 22 20 19 24 24 C 1.53438 * 109.72269 * 179.97438 * 22 20 19 25 25 C 1.53152 * 109.19107 * 168.23368 * 24 22 20 26 26 C 1.53246 * 109.55226 * 290.56332 * 25 24 22 27 27 N 1.46592 * 108.79944 * 50.57996 * 26 25 24 28 28 N 1.39655 * 127.54985 * 162.67057 * 27 26 25 29 29 C 1.31028 * 108.12522 * 180.11128 * 28 27 26 30 30 C 1.40056 * 108.25603 * 359.95396 * 29 28 27 31 31 C 1.34753 * 107.79583 * 359.97438 * 30 29 28 32 32 H 1.08997 * 109.47279 * 182.43191 * 1 2 3 33 33 H 1.09004 * 109.47197 * 302.43419 * 1 2 3 34 34 H 1.09005 * 109.46596 * 62.43381 * 1 2 3 35 35 H 1.09004 * 110.36771 * 86.04552 * 4 2 1 36 36 H 1.08998 * 110.46431 * 323.76318 * 4 2 1 37 37 H 0.96999 * 120.00076 * 353.96451 * 9 8 6 38 38 H 1.09005 * 109.88093 * 118.12912 * 14 5 4 39 39 H 1.08998 * 109.88063 * 239.29547 * 14 5 4 40 40 H 1.09005 * 109.46935 * 48.69173 * 17 15 14 41 41 H 1.09000 * 109.47159 * 168.69118 * 17 15 14 42 42 H 1.09004 * 109.46643 * 299.99878 * 18 17 15 43 43 H 1.09000 * 109.47350 * 59.99893 * 18 17 15 44 44 H 0.96996 * 120.00010 * 359.97438 * 19 18 17 45 45 H 1.08996 * 109.51805 * 288.15230 * 24 22 20 46 46 H 1.09004 * 109.51911 * 48.31777 * 24 22 20 47 47 H 1.08999 * 109.45707 * 50.59029 * 25 24 22 48 48 H 1.09001 * 109.45662 * 170.54114 * 25 24 22 49 49 H 1.09003 * 109.58014 * 170.37196 * 26 25 24 50 50 H 1.08994 * 109.58804 * 290.77850 * 26 25 24 51 51 H 1.07999 * 125.87184 * 179.97438 * 29 28 27 52 52 H 1.08000 * 126.10278 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8064 -1.2004 5 7 3.4276 -1.2421 -0.7739 6 6 4.4644 -1.5652 -1.6081 7 1 5.4728 -1.6091 -1.2240 8 6 4.2191 -1.8364 -2.9472 9 7 3.0539 -2.3239 -3.3172 10 14 5.5430 -1.5095 -4.2239 11 1 5.0351 -1.8796 -5.5694 12 1 6.7462 -2.3205 -3.9081 13 1 5.8997 -0.0681 -4.2092 14 6 3.4667 -1.2785 0.6954 15 6 2.0869 -0.8077 1.2021 16 1 1.4464 -1.6615 1.4230 17 6 2.2357 0.0879 2.4337 18 6 2.6666 -0.7602 3.6319 19 7 2.8084 0.0972 4.8113 20 6 3.1829 -0.4361 5.9910 21 8 3.4021 -1.6258 6.0764 22 6 3.3293 0.4460 7.2042 23 1 2.3796 0.9353 7.4199 24 6 3.7614 -0.3990 8.4098 25 6 4.1894 0.5309 9.5489 26 6 5.5003 1.2308 9.1746 27 7 5.3556 1.8232 7.8415 28 7 6.1519 2.8110 7.2581 29 6 5.6820 3.0587 6.0603 30 6 4.5712 2.2331 5.8454 31 6 4.3937 1.4852 6.9522 32 1 -0.3634 -1.0267 0.0436 33 1 -0.3634 0.5512 0.8674 34 1 -0.3633 0.4756 -0.9111 35 1 2.1555 -0.1717 -2.0838 36 1 1.4530 -1.6705 -1.4042 37 1 2.3987 -2.5757 -2.6477 38 1 3.6616 -2.2954 1.0360 39 1 4.2431 -0.6071 1.0623 40 1 2.9891 0.8512 2.2390 41 1 1.2812 0.5669 2.6520 42 1 1.9131 -1.5235 3.8265 43 1 3.6211 -1.2392 3.4136 44 1 2.6335 1.0488 4.7429 45 1 2.9266 -1.0177 8.7388 46 1 4.5987 -1.0368 8.1262 47 1 3.4143 1.2782 9.7182 48 1 4.3360 -0.0523 10.4580 49 1 5.7165 2.0142 9.9010 50 1 6.3127 0.5042 9.1653 51 1 6.0826 3.7758 5.3591 52 1 3.9650 2.2016 4.9522 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103159270.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:40 Heat of formation + Delta-G solvation = 23.390836 kcal Electronic energy + Delta-G solvation = -30667.648161 eV Core-core repulsion = 26667.534346 eV Total energy + Delta-G solvation = -4000.113815 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.72543 -40.77781 -39.92253 -37.42476 -36.52811 -35.26016 -33.92861 -32.53478 -32.31513 -31.28756 -29.37188 -28.40222 -27.61905 -26.17859 -25.17615 -23.54003 -23.22506 -22.19888 -21.95090 -21.45531 -20.80444 -19.94394 -19.51552 -18.41569 -17.75765 -17.12306 -16.87579 -16.55788 -16.17138 -16.06285 -15.63008 -15.52474 -15.41252 -15.19881 -15.07866 -14.95003 -14.58023 -14.33823 -14.28060 -13.88510 -13.62169 -13.41599 -13.28212 -13.09679 -12.90982 -12.64482 -12.50971 -12.46110 -12.39605 -12.26675 -12.10370 -12.03795 -11.92045 -11.73820 -11.65202 -11.53611 -11.42439 -11.28027 -11.01972 -10.52714 -10.21878 -10.13187 -9.56954 -9.02527 -8.35214 -5.35796 0.75793 1.36922 1.54571 1.62816 1.66506 1.79467 1.82148 2.13852 2.62583 3.15711 3.33193 3.36850 3.51515 3.54707 3.59862 3.67896 3.83799 3.92530 3.95784 4.09271 4.19511 4.22096 4.25518 4.29911 4.39252 4.52307 4.52994 4.61043 4.62937 4.68372 4.69338 4.74736 4.75943 4.86214 4.89759 4.92276 4.97073 5.01375 5.05990 5.09352 5.16808 5.19479 5.20875 5.33287 5.38806 5.41140 5.57415 5.65343 5.66500 5.98611 6.30154 6.46758 6.69315 6.90453 7.15235 7.69724 8.28883 8.96218 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014865 B = 0.002214 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.188463 B =12645.729363 C =13401.692608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 H 0.083 0.917 4 C 0.151 3.849 5 N -0.629 5.629 6 C -0.350 4.350 7 H 0.054 0.946 8 C -0.079 4.079 9 N -0.943 5.943 10 Si 1.116 2.884 11 H -0.289 1.289 12 H -0.276 1.276 13 H -0.279 1.279 14 C 0.134 3.866 15 C -0.077 4.077 16 H 0.077 0.923 17 C -0.100 4.100 18 C 0.123 3.877 19 N -0.709 5.709 20 C 0.522 3.478 21 O -0.577 6.577 22 C -0.037 4.037 23 H 0.154 0.846 24 C -0.110 4.110 25 C -0.122 4.122 26 C 0.118 3.882 27 N -0.370 5.370 28 N -0.327 5.327 29 C 0.039 3.961 30 C -0.275 4.275 31 C 0.082 3.918 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.013 0.987 36 H 0.001 0.999 37 H 0.254 0.746 38 H 0.001 0.999 39 H 0.027 0.973 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.042 0.958 44 H 0.416 0.584 45 H 0.098 0.902 46 H 0.055 0.945 47 H 0.091 0.909 48 H 0.123 0.877 49 H 0.107 0.893 50 H 0.082 0.918 51 H 0.205 0.795 52 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.877 12.592 28.424 31.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 H 0.101 0.899 4 C 0.026 3.974 5 N -0.356 5.356 6 C -0.478 4.478 7 H 0.072 0.928 8 C -0.275 4.275 9 N -0.586 5.586 10 Si 0.939 3.061 11 H -0.214 1.214 12 H -0.202 1.202 13 H -0.205 1.205 14 C 0.009 3.991 15 C -0.096 4.096 16 H 0.096 0.904 17 C -0.138 4.138 18 C -0.001 4.001 19 N -0.362 5.362 20 C 0.308 3.692 21 O -0.456 6.456 22 C -0.060 4.060 23 H 0.171 0.829 24 C -0.148 4.148 25 C -0.160 4.160 26 C -0.002 4.002 27 N -0.154 5.154 28 N -0.148 5.148 29 C -0.146 4.146 30 C -0.304 4.304 31 C -0.047 4.047 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.032 0.968 36 H 0.019 0.981 37 H 0.065 0.935 38 H 0.019 0.981 39 H 0.045 0.955 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.255 0.745 45 H 0.116 0.884 46 H 0.074 0.926 47 H 0.110 0.890 48 H 0.141 0.859 49 H 0.125 0.875 50 H 0.100 0.900 51 H 0.222 0.778 52 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.349 11.958 27.830 30.475 hybrid contribution -0.449 -0.455 0.319 0.714 sum -3.798 11.503 28.149 30.645 Atomic orbital electron populations 1.21652 0.92330 1.01968 1.02800 1.22341 0.96856 0.98464 0.93163 0.89880 1.21544 0.85648 0.94397 0.95817 1.44898 1.10803 1.78153 1.01720 1.20008 0.87445 1.46834 0.93559 0.92772 1.27187 1.03429 0.97445 0.99454 1.70894 1.09663 1.40918 1.37128 0.82863 0.72604 0.76991 0.73615 1.21441 1.20195 1.20499 1.21588 0.97016 0.96578 0.83944 1.22052 0.94730 0.98320 0.94521 0.90426 1.21648 1.03803 0.97382 0.90986 1.21281 1.00684 0.93629 0.84463 1.46037 1.68761 1.12873 1.08546 1.20594 0.75637 0.88070 0.84883 1.90724 1.51502 1.17871 1.85501 1.20237 0.98823 0.92947 0.93975 0.82854 1.21563 1.03082 0.97406 0.92761 1.21978 0.95347 0.99288 0.99416 1.22182 1.00661 0.98265 0.79080 1.48992 1.21859 1.30146 1.14414 1.77264 1.18158 1.08075 1.11335 1.24397 0.95567 1.00270 0.94340 1.21410 1.04491 1.03762 1.00774 1.20738 0.93675 0.98405 0.91861 0.93312 0.89292 0.92776 0.96832 0.98147 0.93550 0.98125 0.95472 0.90506 0.87631 0.91597 0.93982 0.74525 0.88369 0.92587 0.89004 0.85859 0.87480 0.89969 0.77812 0.81947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.30 71.98 0.67 -2.60 16 2 C -0.09 -2.91 3.09 -9.40 -0.03 -2.93 16 3 H 0.08 2.58 8.05 -2.39 -0.02 2.56 16 4 C 0.15 7.24 4.77 86.85 0.41 7.66 16 5 N -0.63 -33.55 3.29 -691.95 -2.28 -35.83 16 6 C -0.35 -20.93 10.02 84.03 0.84 -20.09 16 7 H 0.05 3.25 7.97 -2.91 -0.02 3.23 16 8 C -0.08 -4.75 5.08 84.86 0.43 -4.32 16 9 N -0.94 -60.03 12.93 21.65 0.28 -59.75 16 10 Si 1.12 53.03 30.00 68.60 2.06 55.09 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 14 C 0.13 5.71 6.24 86.73 0.54 6.25 16 15 C -0.08 -2.35 2.39 -9.60 -0.02 -2.37 16 16 H 0.08 2.36 8.01 -2.39 -0.02 2.34 16 17 C -0.10 -2.06 4.73 30.59 0.14 -1.92 16 18 C 0.12 2.79 5.56 86.38 0.48 3.27 16 19 N -0.71 -12.46 4.96 -463.06 -2.30 -14.76 16 20 C 0.52 10.98 7.06 87.66 0.62 11.60 16 21 O -0.58 -17.50 15.81 -3.01 -0.05 -17.55 16 22 C -0.04 -0.52 2.91 -12.08 -0.04 -0.55 16 23 H 0.15 1.08 8.14 -2.39 -0.02 1.06 16 24 C -0.11 -1.35 4.76 30.79 0.15 -1.21 16 25 C -0.12 -0.79 5.93 30.73 0.18 -0.60 16 26 C 0.12 1.36 7.28 86.44 0.63 1.99 16 27 N -0.37 -6.97 4.04 -334.09 -1.35 -8.32 16 28 N -0.33 -7.45 12.62 -56.80 -0.72 -8.16 16 29 C 0.04 0.75 12.03 85.25 1.03 1.78 16 30 C -0.28 -4.82 9.82 21.91 0.22 -4.61 16 31 C 0.08 1.42 6.11 41.28 0.25 1.68 16 32 H 0.05 1.28 8.11 -2.39 -0.02 1.26 16 33 H 0.09 1.57 8.14 -2.38 -0.02 1.56 16 34 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.01 0.71 7.95 -2.38 -0.02 0.69 16 36 H 0.00 0.04 6.70 -2.39 -0.02 0.03 16 37 H 0.25 16.45 6.06 -92.71 -0.56 15.89 16 38 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 39 H 0.03 1.14 7.69 -2.39 -0.02 1.12 16 40 H 0.08 1.57 7.94 -2.38 -0.02 1.55 16 41 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.55 8.14 -2.38 -0.02 1.54 16 43 H 0.04 1.23 7.68 -2.39 -0.02 1.21 16 44 H 0.42 4.69 6.22 -92.71 -0.58 4.11 16 45 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.06 1.01 7.70 -2.38 -0.02 1.00 16 47 H 0.09 0.39 8.12 -2.39 -0.02 0.37 16 48 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 49 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.21 2.77 8.06 -2.91 -0.02 2.75 16 52 H 0.16 2.15 5.95 -2.91 -0.02 2.13 16 Total: -1.00 -85.05 405.71 2.69 -82.36 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.54 Total: 13.90 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 6.51 Total: -6.98 kcal Atomic # 7 Polarization: -120.46 SS G_CDS: -6.36 Total: -126.82 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.05 Total: -17.55 kcal Atomic # 14 Polarization: 53.03 SS G_CDS: 2.06 Total: 55.09 kcal Total: -85.05 2.69 -82.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103159270.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.748 kcal (2) G-P(sol) polarization free energy of solvation -85.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds