Wall clock time and date at job start Wed Apr 1 2020 04:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47028 * 60.00888 * 10 8 6 12 12 H 1.48503 * 109.46851 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47412 * 300.00497 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5 17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5 18 18 C 1.52998 * 109.47329 * 288.78062 * 17 15 14 19 19 N 1.46502 * 109.46927 * 179.97438 * 18 17 15 20 20 C 1.34776 * 119.99595 * 180.02562 * 19 18 17 21 21 O 1.21596 * 120.00494 * 0.02562 * 20 19 18 22 22 C 1.47541 * 119.99725 * 180.02562 * 20 19 18 23 23 C 1.40347 * 120.47460 * 179.72651 * 22 20 19 24 24 C 1.36863 * 118.49487 * 179.73167 * 23 22 20 25 25 C 1.39394 * 119.37451 * 0.53444 * 24 23 22 26 26 N 1.38463 * 119.53919 * 179.69795 * 25 24 23 27 27 C 1.46494 * 119.99883 * 5.02951 * 26 25 24 28 28 C 1.46497 * 120.00240 * 185.02602 * 26 25 24 29 29 N 1.32600 * 120.92465 * 359.72405 * 25 24 23 30 30 C 1.31679 * 121.63509 * 0.02562 * 29 25 24 31 31 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 32 32 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 33 33 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 34 34 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 35 35 H 1.08991 * 110.46486 * 323.76306 * 4 2 1 36 36 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 37 37 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 38 38 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 39 39 H 1.09009 * 109.46621 * 48.78194 * 17 15 14 40 40 H 1.09003 * 109.47118 * 168.77881 * 17 15 14 41 41 H 1.08996 * 109.47298 * 299.99906 * 18 17 15 42 42 H 1.09001 * 109.46952 * 60.00351 * 18 17 15 43 43 H 0.96996 * 120.00114 * 0.02562 * 19 18 17 44 44 H 1.08001 * 120.75677 * 359.97438 * 23 22 20 45 45 H 1.08002 * 120.31280 * 180.26286 * 24 23 22 46 46 H 1.08998 * 109.47854 * 59.99731 * 27 26 25 47 47 H 1.09001 * 109.47628 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.47247 * 299.99575 * 27 26 25 49 49 H 1.09003 * 109.47562 * 89.99782 * 28 26 25 50 50 H 1.08998 * 109.47070 * 210.00657 * 28 26 25 51 51 H 1.09008 * 109.47238 * 329.99998 * 28 26 25 52 52 H 1.08007 * 119.73933 * 180.02562 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 6.1187 -3.3418 -3.8830 12 1 5.2768 -1.7776 -5.5341 13 1 6.8595 -1.0330 -3.8549 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4481 -1.6634 1.4209 17 6 2.2317 0.0866 2.4349 18 6 2.6627 -0.7619 3.6328 19 7 2.8018 0.0947 4.8131 20 6 3.1759 -0.4392 5.9928 21 8 3.3984 -1.6316 6.0773 22 6 3.3155 0.4234 7.1816 23 6 3.6989 -0.1229 8.4163 24 6 3.8213 0.7153 9.4913 25 6 3.5530 2.0740 9.3330 26 7 3.6696 2.9240 10.4198 27 6 4.1781 2.4154 11.6961 28 6 3.2848 4.3318 10.2933 29 7 3.1870 2.5638 8.1564 30 6 3.0622 1.7931 7.0960 31 1 -0.3634 -1.0267 0.0436 32 1 -0.3632 0.5511 0.8675 33 1 -0.3633 0.4756 -0.9109 34 1 2.1553 -0.1715 -2.0839 35 1 1.4528 -1.6703 -1.4044 36 1 3.0220 -1.0667 -4.4488 37 1 3.6616 -2.2956 1.0356 38 1 4.2431 -0.6073 1.0620 39 1 2.9836 0.8519 2.2422 40 1 1.2757 0.5631 2.6523 41 1 1.9108 -1.5272 3.8253 42 1 3.6187 -1.2383 3.4154 43 1 2.6247 1.0459 4.7456 44 1 3.8967 -1.1800 8.5150 45 1 4.1187 0.3269 10.4542 46 1 5.1867 2.0265 11.5566 47 1 4.1987 3.2238 12.4271 48 1 3.5275 1.6177 12.0545 49 1 2.2313 4.4450 10.5494 50 1 3.8900 4.9360 10.9691 51 1 3.4467 4.6620 9.2672 52 1 2.7626 2.2246 6.1523 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103176044.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:54 Heat of formation + Delta-G solvation = 30.028632 kcal Electronic energy + Delta-G solvation = -29428.742524 eV Core-core repulsion = 25428.916545 eV Total energy + Delta-G solvation = -3999.825979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.94156 -39.39368 -38.09514 -36.88153 -35.24850 -33.25833 -32.89595 -31.68277 -30.70238 -30.36909 -28.74959 -27.11080 -26.04438 -25.47594 -24.03763 -23.72228 -22.49472 -21.86171 -20.66629 -19.67862 -19.20031 -18.28790 -17.44281 -17.09991 -16.76084 -15.90254 -15.67682 -15.55216 -15.26030 -14.98157 -14.70200 -14.38219 -14.17299 -13.90007 -13.66464 -13.37729 -13.35420 -13.16775 -12.93913 -12.88847 -12.79325 -12.74784 -12.38216 -12.02826 -11.96570 -11.59830 -11.45013 -11.08474 -10.97826 -10.81653 -10.69676 -10.44356 -10.31440 -10.18748 -10.07971 -9.85936 -9.79225 -9.67303 -9.64510 -9.27301 -9.07907 -8.59047 -8.05217 -6.75887 -5.59364 -3.00533 0.57978 1.00627 2.38971 2.80104 3.12000 3.44283 3.48200 3.49634 3.68254 4.00189 4.40014 4.49662 4.54063 4.59255 4.70810 4.77730 4.84561 4.90701 4.98389 5.08629 5.14055 5.15664 5.27373 5.34037 5.41003 5.50639 5.55447 5.58928 5.60505 5.72517 5.80609 5.88315 5.99382 6.04835 6.07092 6.19673 6.29843 6.31669 6.35728 6.38266 6.44581 6.61227 6.66953 6.75267 6.80514 6.88875 7.08083 7.44488 7.61212 7.63932 7.69443 7.92793 8.17528 8.43029 9.28715 9.89766 10.55482 11.44238 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019249 B = 0.001696 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.260879 B =16506.385840 C =16896.941935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.068 0.932 4 C 0.159 3.841 5 N -0.605 5.605 6 C -0.220 4.220 7 H 0.076 0.924 8 C -0.013 4.013 9 N -0.923 5.923 10 Si 0.914 3.086 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.139 3.861 15 C -0.092 4.092 16 H 0.072 0.928 17 C -0.117 4.117 18 C 0.119 3.881 19 N -0.726 5.726 20 C 0.567 3.433 21 O -0.543 6.543 22 C -0.249 4.249 23 C 0.025 3.975 24 C -0.244 4.244 25 C 0.418 3.582 26 N -0.611 5.611 27 C 0.094 3.906 28 C 0.094 3.906 29 N -0.546 5.546 30 C 0.189 3.811 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.104 0.896 35 H 0.011 0.989 36 H 0.251 0.749 37 H 0.019 0.981 38 H 0.022 0.978 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.397 0.603 44 H 0.145 0.855 45 H 0.137 0.863 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.061 0.939 49 H 0.050 0.950 50 H 0.065 0.935 51 H 0.082 0.918 52 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.063 10.690 29.949 31.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.086 0.914 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.349 4.349 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.572 5.572 10 Si 0.744 3.256 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.013 3.987 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.155 4.155 18 C -0.004 4.004 19 N -0.377 5.377 20 C 0.354 3.646 21 O -0.421 6.421 22 C -0.258 4.258 23 C -0.001 4.001 24 C -0.269 4.269 25 C 0.183 3.817 26 N -0.323 5.323 27 C -0.050 4.050 28 C -0.048 4.048 29 N -0.263 5.263 30 C 0.029 3.971 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.122 0.878 35 H 0.029 0.971 36 H 0.062 0.938 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.232 0.768 44 H 0.163 0.837 45 H 0.154 0.846 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.079 0.921 49 H 0.068 0.932 50 H 0.084 0.916 51 H 0.101 0.899 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.989 10.826 29.877 31.918 hybrid contribution 0.803 -0.690 -0.507 1.174 sum -2.185 10.136 29.370 31.147 Atomic orbital electron populations 1.21632 0.95791 1.01119 1.00532 1.22627 0.94338 0.99357 0.97118 0.91385 1.21959 0.84079 0.95860 0.94728 1.44494 1.10497 1.78929 0.99183 1.19049 0.90982 1.37625 0.87244 0.90626 1.24777 0.97258 1.02163 0.96603 1.69795 1.22402 1.53976 1.11017 0.86162 0.81270 0.78194 0.79943 1.21265 1.21605 1.21235 1.21376 0.93739 0.97215 0.86336 1.22145 0.98146 0.97609 0.93285 0.90939 1.21795 1.01495 0.98517 0.93671 1.21516 1.02325 0.93285 0.83283 1.45971 1.70036 1.12157 1.09563 1.17922 0.76714 0.87342 0.82621 1.90786 1.50676 1.15499 1.85133 1.20645 1.13989 0.95356 0.95775 1.21167 0.88319 1.00589 0.90032 1.21122 1.12285 0.92333 1.01140 1.18494 0.88857 0.87624 0.86706 1.46218 1.67995 1.09268 1.08799 1.21754 0.99009 1.00427 0.83765 1.21681 0.99555 0.79853 1.03759 1.67209 1.21494 1.39155 0.98425 1.22641 0.89800 0.88903 0.95781 0.93098 0.93858 0.92836 0.87809 0.97101 0.93785 0.96268 0.95984 0.91172 0.91554 0.91389 0.90886 0.76826 0.83701 0.84559 0.92090 0.90090 0.92089 0.93155 0.91647 0.89881 0.82385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.30 37.16 0.35 -1.70 16 2 C -0.11 -2.11 3.09 -88.47 -0.27 -2.39 16 3 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 4 C 0.16 3.86 5.35 -2.53 -0.01 3.85 16 5 N -0.61 -15.79 3.39 -170.06 -0.58 -16.37 16 6 C -0.22 -6.28 10.27 -15.06 -0.15 -6.44 16 7 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 8 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 9 N -0.92 -27.23 10.09 55.49 0.56 -26.67 16 10 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.14 2.95 6.25 -3.06 -0.02 2.93 16 15 C -0.09 -1.56 2.38 -88.77 -0.21 -1.77 16 16 H 0.07 1.21 8.02 -51.93 -0.42 0.79 16 17 C -0.12 -1.50 4.74 -26.73 -0.13 -1.63 16 18 C 0.12 1.55 5.56 -4.04 -0.02 1.52 16 19 N -0.73 -8.12 5.51 -61.35 -0.34 -8.46 16 20 C 0.57 7.41 7.77 -12.47 -0.10 7.31 16 21 O -0.54 -9.15 16.41 5.28 0.09 -9.06 16 22 C -0.25 -2.69 5.89 -104.82 -0.62 -3.31 16 23 C 0.02 0.25 9.65 -39.29 -0.38 -0.13 16 24 C -0.24 -2.04 9.26 -39.65 -0.37 -2.41 16 25 C 0.42 3.82 7.36 -155.28 -1.14 2.68 16 26 N -0.61 -4.15 3.37 -189.71 -0.64 -4.79 16 27 C 0.09 0.34 9.39 59.84 0.56 0.90 16 28 C 0.09 0.51 10.46 59.85 0.63 1.14 16 29 N -0.55 -5.47 9.04 -12.14 -0.11 -5.58 16 30 C 0.19 1.77 10.71 -17.13 -0.18 1.58 16 31 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.10 2.86 5.87 -51.93 -0.31 2.55 16 35 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 36 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 38 H 0.02 0.46 7.70 -51.93 -0.40 0.06 16 39 H 0.07 0.91 7.95 -51.92 -0.41 0.50 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.09 7.69 -51.93 -0.40 0.69 16 43 H 0.40 3.26 6.52 -40.82 -0.27 2.99 16 44 H 0.15 1.39 7.73 -52.49 -0.41 0.98 16 45 H 0.14 0.80 6.66 -52.49 -0.35 0.45 16 46 H 0.06 0.20 8.09 -51.93 -0.42 -0.22 16 47 H 0.08 0.14 7.79 -51.93 -0.40 -0.26 16 48 H 0.06 0.19 7.71 -51.93 -0.40 -0.22 16 49 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.06 0.22 7.92 -51.93 -0.41 -0.19 16 51 H 0.08 0.56 7.28 -51.92 -0.38 0.18 16 52 H 0.16 1.05 6.41 -52.48 -0.34 0.72 16 LS Contribution 414.16 15.07 6.24 6.24 Total: -1.00 -34.97 414.16 -10.62 -45.59 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.64 Total: -0.01 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -2.17 Total: 1.67 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -1.11 Total: -61.87 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.97 -10.62 -45.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103176044.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.617 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds