Wall clock time and date at job start Wed Apr 1 2020 04:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.63716 * 2 1 4 4 C 1.54325 * 110.87403 * 236.75172 * 2 1 3 5 5 N 1.47290 * 107.30599 * 219.38314 * 4 2 1 6 6 C 1.36938 * 125.79079 * 178.92205 * 5 4 2 7 7 H 1.08005 * 119.99558 * 180.02562 * 6 5 4 8 8 C 1.38811 * 120.00146 * 0.02562 * 6 5 4 9 9 N 1.31620 * 120.00086 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99779 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47294 * 89.99594 * 10 8 6 12 12 H 1.48503 * 109.46797 * 209.99511 * 10 8 6 13 13 H 1.48500 * 109.47035 * 329.99310 * 10 8 6 14 14 C 1.47425 * 108.55742 * 358.92448 * 5 4 2 15 15 C 1.54908 * 104.92961 * 24.15407 * 14 5 4 16 16 H 1.09008 * 111.00494 * 81.01141 * 15 14 5 17 17 C 1.52999 * 111.00368 * 204.85960 * 15 14 5 18 18 C 1.52997 * 109.47275 * 293.54646 * 17 15 14 19 19 N 1.46502 * 109.46940 * 179.97438 * 18 17 15 20 20 C 1.34780 * 119.99919 * 180.02562 * 19 18 17 21 21 O 1.21285 * 120.00027 * 0.02562 * 20 19 18 22 22 C 1.50701 * 120.00258 * 180.02562 * 20 19 18 23 23 H 1.09001 * 109.67191 * 59.47879 * 22 20 19 24 24 C 1.53398 * 109.68371 * 179.97438 * 22 20 19 25 25 C 1.53111 * 109.44812 * 169.37801 * 24 22 20 26 26 C 1.53354 * 109.53468 * 290.00340 * 25 24 22 27 27 C 1.50862 * 108.41867 * 49.97671 * 26 25 24 28 28 N 1.33572 * 128.03527 * 163.24799 * 27 26 25 29 29 C 1.30751 * 109.14750 * 180.02562 * 28 27 26 30 30 N 1.35312 * 108.76665 * 0.02562 * 29 28 27 31 31 H 0.96998 * 126.50110 * 179.97438 * 30 29 28 32 32 C 1.35030 * 123.98338 * 343.30562 * 27 26 25 33 33 H 1.08999 * 109.47394 * 296.85917 * 1 2 3 34 34 H 1.09001 * 109.47080 * 56.85884 * 1 2 3 35 35 H 1.08999 * 109.46882 * 176.85698 * 1 2 3 36 36 H 1.09004 * 109.88239 * 338.79110 * 4 2 1 37 37 H 1.08995 * 109.88239 * 99.80032 * 4 2 1 38 38 H 0.96999 * 120.00175 * 180.02562 * 9 8 6 39 39 H 1.09002 * 110.36696 * 265.26054 * 14 5 4 40 40 H 1.08995 * 110.36608 * 143.04891 * 14 5 4 41 41 H 1.08994 * 109.47238 * 53.55041 * 17 15 14 42 42 H 1.09004 * 109.46626 * 173.54596 * 17 15 14 43 43 H 1.08996 * 109.47431 * 299.99824 * 18 17 15 44 44 H 1.08998 * 109.46915 * 60.00403 * 18 17 15 45 45 H 0.96993 * 120.00063 * 0.02562 * 19 18 17 46 46 H 1.09000 * 109.47131 * 289.37370 * 24 22 20 47 47 H 1.08999 * 109.47331 * 49.38441 * 24 22 20 48 48 H 1.09004 * 109.46046 * 50.01970 * 25 24 22 49 49 H 1.08998 * 109.46662 * 169.99160 * 25 24 22 50 50 H 1.09005 * 109.67229 * 169.71105 * 26 25 24 51 51 H 1.08999 * 109.67504 * 290.24053 * 26 25 24 52 52 H 1.07997 * 125.61748 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2516 -1.5489 -0.7352 6 6 4.0155 -2.3951 -1.4939 7 1 4.8575 -2.9060 -1.0508 8 6 3.7075 -2.5961 -2.8325 9 7 2.6810 -1.9738 -3.3723 10 14 4.7492 -3.7510 -3.8672 11 1 4.1913 -5.1249 -3.7890 12 1 4.7412 -3.2930 -5.2798 13 1 6.1432 -3.7529 -3.3553 14 6 3.4652 -1.2446 0.6914 15 6 2.0789 -0.7933 1.2151 16 1 1.4468 -1.6529 1.4384 17 6 2.2236 0.1112 2.4406 18 6 2.7977 -0.6969 3.6060 19 7 2.9368 0.1694 4.7792 20 6 3.4267 -0.3299 5.9313 21 8 3.7528 -1.4962 5.9967 22 6 3.5692 0.5611 7.1384 23 1 2.5947 0.9643 7.4140 24 6 4.1447 -0.2445 8.3101 25 6 4.5346 0.7099 9.4421 26 6 5.7579 1.5330 9.0204 27 6 5.4889 2.1228 7.6581 28 7 6.1284 3.1291 7.0561 29 6 5.5912 3.3376 5.8824 30 7 4.5800 2.4565 5.7038 31 1 4.0082 2.3848 4.9236 32 6 4.5170 1.6898 6.8268 33 1 -0.3634 0.4643 0.9168 34 1 -0.3633 0.5618 -0.8605 35 1 -0.3633 -1.0261 -0.0563 36 1 1.3191 -1.4773 -1.5770 37 1 2.3750 -0.1017 -1.9974 38 1 2.4656 -2.1146 -4.3075 39 1 4.1929 -0.4409 0.8030 40 1 3.8001 -2.1352 1.2232 41 1 2.8950 0.9370 2.2055 42 1 1.2461 0.5055 2.7185 43 1 2.1263 -1.5227 3.8413 44 1 3.7752 -1.0911 3.3281 45 1 2.6764 1.1023 4.7269 46 1 3.3945 -0.9484 8.6703 47 1 5.0263 -0.7919 7.9765 48 1 3.7018 1.3801 9.6551 49 1 4.7751 0.1342 10.3359 50 1 5.9271 2.3340 9.7402 51 1 6.6358 0.8887 8.9747 52 1 5.9028 4.0898 5.1728 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103425652.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:13 Heat of formation + Delta-G solvation = 22.825811 kcal Electronic energy + Delta-G solvation = -30650.552470 eV Core-core repulsion = 26650.414153 eV Total energy + Delta-G solvation = -4000.138316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.73797 -40.01217 -38.27854 -36.79296 -35.39182 -33.73727 -33.16561 -31.37183 -30.72146 -30.33892 -29.24996 -27.02522 -25.76470 -24.82455 -23.84369 -22.58961 -22.30503 -21.76244 -21.04106 -19.79738 -19.31622 -19.25334 -18.34191 -17.25832 -16.89170 -16.13073 -15.92963 -15.51724 -15.08869 -15.01075 -14.70049 -14.47595 -14.20487 -14.06227 -13.85864 -13.62789 -13.38878 -13.12351 -12.92196 -12.62382 -12.42083 -12.29838 -12.02761 -11.78096 -11.57987 -11.48461 -11.28232 -11.27013 -11.23296 -11.15342 -10.81171 -10.79139 -10.51177 -10.19755 -10.10377 -10.01689 -9.94187 -9.88350 -9.69650 -9.54164 -9.32098 -8.61266 -8.50166 -6.83334 -5.71849 -3.04964 1.59614 2.30633 2.67925 2.76824 2.91909 3.39751 3.44958 3.46619 4.09206 4.16872 4.35976 4.42300 4.49417 4.64313 4.76969 4.84624 4.92646 4.97793 5.00160 5.11383 5.16539 5.27343 5.41280 5.42635 5.53771 5.55488 5.60053 5.61979 5.66192 5.69339 5.76461 5.81262 5.88205 5.88773 5.99573 6.02634 6.12064 6.16971 6.19197 6.26768 6.39761 6.45016 6.57990 6.60606 6.73583 6.94599 6.97349 7.11748 7.56179 7.61547 7.74027 7.82512 7.88931 8.25304 9.21695 9.82186 10.48564 11.40031 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.002137 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.257910 B =13100.809109 C =13377.916413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.063 0.937 4 C 0.183 3.817 5 N -0.607 5.607 6 C -0.227 4.227 7 H 0.077 0.923 8 C -0.009 4.009 9 N -0.923 5.923 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.140 3.860 15 C -0.095 4.095 16 H 0.077 0.923 17 C -0.116 4.116 18 C 0.116 3.884 19 N -0.733 5.733 20 C 0.514 3.486 21 O -0.523 6.523 22 C -0.027 4.027 23 H 0.109 0.891 24 C -0.097 4.097 25 C -0.117 4.117 26 C -0.037 4.037 27 C 0.021 3.979 28 N -0.486 5.486 29 C 0.189 3.811 30 N -0.560 5.560 31 H 0.416 0.584 32 C -0.029 4.029 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.040 0.960 38 H 0.252 0.748 39 H 0.015 0.985 40 H 0.037 0.963 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.389 0.611 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.077 0.923 50 H 0.079 0.921 51 H 0.078 0.922 52 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.421 11.529 23.533 26.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.081 0.919 4 C 0.058 3.942 5 N -0.333 5.333 6 C -0.355 4.355 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.570 5.570 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.013 3.987 15 C -0.115 4.115 16 H 0.096 0.904 17 C -0.154 4.154 18 C -0.007 4.007 19 N -0.386 5.386 20 C 0.299 3.701 21 O -0.397 6.397 22 C -0.049 4.049 23 H 0.127 0.873 24 C -0.135 4.135 25 C -0.155 4.155 26 C -0.075 4.075 27 C -0.110 4.110 28 N -0.204 5.204 29 C -0.094 4.094 30 N -0.163 5.163 31 H 0.256 0.744 32 C -0.145 4.145 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.033 0.967 40 H 0.055 0.945 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.223 0.777 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.085 0.915 49 H 0.096 0.904 50 H 0.097 0.903 51 H 0.096 0.904 52 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -1.473 11.021 23.681 26.162 hybrid contribution -0.588 -0.415 -1.762 1.904 sum -2.061 10.606 21.919 24.437 Atomic orbital electron populations 1.21677 0.95521 1.01614 1.00253 1.22478 0.94959 0.98857 0.97017 0.91866 1.21246 0.89068 0.93107 0.90771 1.44522 1.32425 1.51588 1.04729 1.19066 1.07440 1.17722 0.91301 0.90497 1.24797 0.98480 1.00366 0.96892 1.69960 1.28891 1.45677 1.12513 0.86125 0.79585 0.80403 0.79716 1.21591 1.21681 1.20702 1.21595 0.93198 0.97030 0.86843 1.22328 0.98989 0.97579 0.92618 0.90449 1.21752 1.00718 0.98686 0.94287 1.21567 1.02316 0.93288 0.83539 1.46228 1.66278 1.13798 1.12269 1.20527 0.76986 0.88580 0.83981 1.90746 1.48089 1.17243 1.83657 1.19934 0.98523 0.91679 0.94790 0.87335 1.21439 1.02441 0.97023 0.92609 1.21633 0.97880 0.97970 0.98058 1.20000 0.98430 0.98562 0.90540 1.20530 0.95467 0.96909 0.98050 1.70030 1.27555 1.16981 1.05880 1.25132 0.89679 0.97442 0.97132 1.43068 1.29121 1.27923 1.16220 0.74447 1.20437 1.04348 0.99663 0.90049 0.93877 0.92953 0.92713 0.93418 0.94210 0.93804 0.96721 0.94490 0.91571 0.91587 0.91078 0.90711 0.77728 0.90188 0.90072 0.91467 0.90411 0.90252 0.90353 0.77220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.17 37.16 0.34 -1.62 16 2 C -0.11 -1.96 3.01 -88.79 -0.27 -2.23 16 3 H 0.06 1.03 8.04 -51.93 -0.42 0.62 16 4 C 0.18 4.34 4.98 -2.92 -0.01 4.32 16 5 N -0.61 -15.44 3.40 -169.86 -0.58 -16.02 16 6 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 7 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.15 10.33 55.49 0.57 -26.58 16 10 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.14 2.80 5.89 -2.53 -0.01 2.79 16 15 C -0.10 -1.51 2.52 -88.47 -0.22 -1.73 16 16 H 0.08 1.28 8.05 -51.92 -0.42 0.86 16 17 C -0.12 -1.30 4.84 -26.73 -0.13 -1.43 16 18 C 0.12 1.34 5.52 -4.04 -0.02 1.32 16 19 N -0.73 -6.75 5.10 -60.29 -0.31 -7.06 16 20 C 0.51 5.70 7.13 -10.98 -0.08 5.62 16 21 O -0.52 -8.00 15.82 5.55 0.09 -7.91 16 22 C -0.03 -0.22 2.90 -92.74 -0.27 -0.49 16 23 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 24 C -0.10 -0.78 4.68 -26.47 -0.12 -0.90 16 25 C -0.12 -0.74 5.90 -26.49 -0.16 -0.89 16 26 C -0.04 -0.30 6.30 -27.62 -0.17 -0.47 16 27 C 0.02 0.22 6.98 -82.90 -0.58 -0.36 16 28 N -0.49 -5.54 11.25 -10.74 -0.12 -5.66 16 29 C 0.19 1.61 13.05 -89.92 -1.17 0.43 16 30 N -0.56 -4.27 5.90 -10.29 -0.06 -4.33 16 31 H 0.42 2.21 6.85 -40.82 -0.28 1.93 16 32 C -0.03 -0.26 6.32 -81.86 -0.52 -0.78 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 36 H 0.05 1.26 7.03 -51.93 -0.36 0.90 16 37 H 0.04 1.06 7.51 -51.93 -0.39 0.67 16 38 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.02 0.30 8.00 -51.93 -0.42 -0.12 16 40 H 0.04 0.75 8.06 -51.93 -0.42 0.33 16 41 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 1.03 7.45 -51.93 -0.39 0.65 16 45 H 0.39 2.40 6.58 -40.82 -0.27 2.14 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.08 0.82 7.73 -51.93 -0.40 0.42 16 48 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16 49 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 52 H 0.21 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 404.72 15.07 6.10 6.10 Total: -1.00 -35.43 404.72 -11.78 -47.21 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -8.80 Total: 0.27 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -3.65 Total: -3.32 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.49 Total: -59.65 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.09 Total: -7.91 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.43 -11.78 -47.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103425652.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.038 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds