Wall clock time and date at job start Wed Apr 1 2020 04:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.63716 * 2 1 4 4 C 1.54325 * 110.87403 * 236.75172 * 2 1 3 5 5 N 1.47290 * 107.30599 * 219.38314 * 4 2 1 6 6 C 1.36938 * 125.79079 * 178.92205 * 5 4 2 7 7 H 1.08005 * 119.99558 * 180.02562 * 6 5 4 8 8 C 1.38811 * 120.00146 * 0.02562 * 6 5 4 9 9 N 1.31620 * 120.00086 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99779 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47294 * 89.99594 * 10 8 6 12 12 H 1.48503 * 109.46797 * 209.99511 * 10 8 6 13 13 H 1.48500 * 109.47035 * 329.99310 * 10 8 6 14 14 C 1.47425 * 108.55742 * 358.92448 * 5 4 2 15 15 C 1.54908 * 104.92961 * 24.15407 * 14 5 4 16 16 H 1.09008 * 111.00494 * 81.01141 * 15 14 5 17 17 C 1.52999 * 111.00368 * 204.85960 * 15 14 5 18 18 C 1.52997 * 109.47275 * 293.54646 * 17 15 14 19 19 N 1.46502 * 109.46940 * 179.97438 * 18 17 15 20 20 C 1.34780 * 119.99919 * 180.02562 * 19 18 17 21 21 O 1.21285 * 120.00027 * 0.02562 * 20 19 18 22 22 C 1.50701 * 120.00258 * 180.02562 * 20 19 18 23 23 H 1.09001 * 109.67191 * 59.47879 * 22 20 19 24 24 C 1.53398 * 109.68371 * 179.97438 * 22 20 19 25 25 C 1.53111 * 109.44812 * 169.37801 * 24 22 20 26 26 C 1.53354 * 109.53468 * 290.00340 * 25 24 22 27 27 C 1.50862 * 108.41867 * 49.97671 * 26 25 24 28 28 N 1.33572 * 128.03527 * 163.24799 * 27 26 25 29 29 C 1.30751 * 109.14750 * 180.02562 * 28 27 26 30 30 N 1.35312 * 108.76665 * 0.02562 * 29 28 27 31 31 H 0.96998 * 126.50110 * 179.97438 * 30 29 28 32 32 C 1.35030 * 123.98338 * 343.30562 * 27 26 25 33 33 H 1.08999 * 109.47394 * 296.85917 * 1 2 3 34 34 H 1.09001 * 109.47080 * 56.85884 * 1 2 3 35 35 H 1.08999 * 109.46882 * 176.85698 * 1 2 3 36 36 H 1.09004 * 109.88239 * 338.79110 * 4 2 1 37 37 H 1.08995 * 109.88239 * 99.80032 * 4 2 1 38 38 H 0.96999 * 120.00175 * 180.02562 * 9 8 6 39 39 H 1.09002 * 110.36696 * 265.26054 * 14 5 4 40 40 H 1.08995 * 110.36608 * 143.04891 * 14 5 4 41 41 H 1.08994 * 109.47238 * 53.55041 * 17 15 14 42 42 H 1.09004 * 109.46626 * 173.54596 * 17 15 14 43 43 H 1.08996 * 109.47431 * 299.99824 * 18 17 15 44 44 H 1.08998 * 109.46915 * 60.00403 * 18 17 15 45 45 H 0.96993 * 120.00063 * 0.02562 * 19 18 17 46 46 H 1.09000 * 109.47131 * 289.37370 * 24 22 20 47 47 H 1.08999 * 109.47331 * 49.38441 * 24 22 20 48 48 H 1.09004 * 109.46046 * 50.01970 * 25 24 22 49 49 H 1.08998 * 109.46662 * 169.99160 * 25 24 22 50 50 H 1.09005 * 109.67229 * 169.71105 * 26 25 24 51 51 H 1.08999 * 109.67504 * 290.24053 * 26 25 24 52 52 H 1.07997 * 125.61748 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2516 -1.5489 -0.7352 6 6 4.0155 -2.3951 -1.4939 7 1 4.8575 -2.9060 -1.0508 8 6 3.7075 -2.5961 -2.8325 9 7 2.6810 -1.9738 -3.3723 10 14 4.7492 -3.7510 -3.8672 11 1 4.1913 -5.1249 -3.7890 12 1 4.7412 -3.2930 -5.2798 13 1 6.1432 -3.7529 -3.3553 14 6 3.4652 -1.2446 0.6914 15 6 2.0789 -0.7933 1.2151 16 1 1.4468 -1.6529 1.4384 17 6 2.2236 0.1112 2.4406 18 6 2.7977 -0.6969 3.6060 19 7 2.9368 0.1694 4.7792 20 6 3.4267 -0.3299 5.9313 21 8 3.7528 -1.4962 5.9967 22 6 3.5692 0.5611 7.1384 23 1 2.5947 0.9643 7.4140 24 6 4.1447 -0.2445 8.3101 25 6 4.5346 0.7099 9.4421 26 6 5.7579 1.5330 9.0204 27 6 5.4889 2.1228 7.6581 28 7 6.1284 3.1291 7.0561 29 6 5.5912 3.3376 5.8824 30 7 4.5800 2.4565 5.7038 31 1 4.0082 2.3848 4.9236 32 6 4.5170 1.6898 6.8268 33 1 -0.3634 0.4643 0.9168 34 1 -0.3633 0.5618 -0.8605 35 1 -0.3633 -1.0261 -0.0563 36 1 1.3191 -1.4773 -1.5770 37 1 2.3750 -0.1017 -1.9974 38 1 2.4656 -2.1146 -4.3075 39 1 4.1929 -0.4409 0.8030 40 1 3.8001 -2.1352 1.2232 41 1 2.8950 0.9370 2.2055 42 1 1.2461 0.5055 2.7185 43 1 2.1263 -1.5227 3.8413 44 1 3.7752 -1.0911 3.3281 45 1 2.6764 1.1023 4.7269 46 1 3.3945 -0.9484 8.6703 47 1 5.0263 -0.7919 7.9765 48 1 3.7018 1.3801 9.6551 49 1 4.7751 0.1342 10.3359 50 1 5.9271 2.3340 9.7402 51 1 6.6358 0.8887 8.9747 52 1 5.9028 4.0898 5.1728 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103425652.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:12 Heat of formation + Delta-G solvation = 0.431962 kcal Electronic energy + Delta-G solvation = -30651.523540 eV Core-core repulsion = 26650.414153 eV Total energy + Delta-G solvation = -4001.109387 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.39022 -40.90262 -39.76345 -37.46982 -36.47494 -35.10814 -34.26395 -32.55463 -32.47225 -31.10268 -29.88650 -28.49471 -27.46841 -25.97718 -24.94224 -23.56076 -23.20116 -22.55106 -21.94554 -21.31042 -20.72320 -19.87402 -19.04984 -18.87177 -18.02934 -17.14230 -16.96085 -16.67104 -16.22901 -15.97565 -15.71525 -15.53519 -15.44576 -15.14857 -14.89370 -14.48638 -14.44460 -14.25627 -14.16180 -13.79745 -13.50768 -13.45273 -13.35118 -12.99296 -12.95050 -12.81316 -12.75513 -12.42340 -12.24651 -12.18802 -11.94035 -11.84130 -11.82943 -11.80858 -11.47566 -11.36653 -11.23840 -11.09630 -10.86763 -10.74270 -10.70436 -10.22207 -9.16919 -8.90683 -7.87909 -5.22848 0.93520 1.41801 1.43596 1.47947 1.52252 1.98023 2.10742 2.19674 2.46412 3.29696 3.47928 3.51250 3.60919 3.70510 3.76698 3.84525 3.92530 4.00627 4.09630 4.23068 4.30436 4.31573 4.35994 4.44734 4.49032 4.52660 4.59617 4.70120 4.72071 4.72908 4.80513 4.98510 4.99085 5.00097 5.01058 5.09345 5.14073 5.15549 5.18607 5.25629 5.28128 5.31819 5.39306 5.44649 5.45823 5.52061 5.73599 5.75461 5.82059 6.18806 6.35103 6.45314 7.08025 7.08770 7.09697 7.76675 8.41051 9.22161 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.002137 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.257910 B =13100.809109 C =13377.916413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.082 0.918 4 C 0.188 3.812 5 N -0.632 5.632 6 C -0.244 4.244 7 H 0.076 0.924 8 C -0.067 4.067 9 N -0.949 5.949 10 Si 0.976 3.024 11 H -0.286 1.286 12 H -0.292 1.292 13 H -0.271 1.271 14 C 0.133 3.867 15 C -0.079 4.079 16 H 0.071 0.929 17 C -0.100 4.100 18 C 0.122 3.878 19 N -0.716 5.716 20 C 0.512 3.488 21 O -0.571 6.571 22 C -0.017 4.017 23 H 0.141 0.859 24 C -0.097 4.097 25 C -0.107 4.107 26 C -0.040 4.040 27 C -0.004 4.004 28 N -0.527 5.527 29 C 0.191 3.809 30 N -0.552 5.552 31 H 0.428 0.572 32 C -0.033 4.033 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.039 0.961 36 H 0.009 0.991 37 H -0.001 1.001 38 H 0.247 0.753 39 H 0.023 0.977 40 H 0.028 0.972 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.408 0.592 46 H 0.087 0.913 47 H 0.053 0.947 48 H 0.081 0.919 49 H 0.093 0.907 50 H 0.083 0.917 51 H 0.069 0.931 52 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.520 13.308 25.358 28.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.100 0.900 4 C 0.063 3.937 5 N -0.358 5.358 6 C -0.373 4.373 7 H 0.094 0.906 8 C -0.260 4.260 9 N -0.598 5.598 10 Si 0.804 3.196 11 H -0.213 1.213 12 H -0.218 1.218 13 H -0.196 1.196 14 C 0.008 3.992 15 C -0.099 4.099 16 H 0.089 0.911 17 C -0.138 4.138 18 C -0.002 4.002 19 N -0.370 5.370 20 C 0.299 3.701 21 O -0.449 6.449 22 C -0.040 4.040 23 H 0.158 0.842 24 C -0.136 4.136 25 C -0.144 4.144 26 C -0.078 4.078 27 C -0.134 4.134 28 N -0.247 5.247 29 C -0.092 4.092 30 N -0.157 5.157 31 H 0.269 0.731 32 C -0.150 4.150 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.018 0.982 38 H 0.056 0.944 39 H 0.040 0.960 40 H 0.047 0.953 41 H 0.101 0.899 42 H 0.120 0.880 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.245 0.755 46 H 0.105 0.895 47 H 0.072 0.928 48 H 0.099 0.901 49 H 0.112 0.888 50 H 0.101 0.899 51 H 0.087 0.913 52 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.587 12.841 25.531 28.695 hybrid contribution -0.177 -0.966 -2.345 2.543 sum -2.764 11.875 23.186 26.196 Atomic orbital electron populations 1.21638 0.93133 1.01232 1.02448 1.22356 0.96781 0.98637 0.94136 0.89969 1.21065 0.87772 0.91965 0.92878 1.44883 1.32591 1.51375 1.06948 1.19430 1.07765 1.18040 0.92059 0.90567 1.25633 0.99927 1.02265 0.98132 1.70186 1.30343 1.47024 1.12295 0.85113 0.78448 0.78271 0.77734 1.21268 1.21795 1.19593 1.21819 0.96199 0.96954 0.84216 1.22194 0.95575 0.98108 0.94021 0.91073 1.21621 1.03129 0.97657 0.91401 1.21317 1.00675 0.93621 0.84547 1.45996 1.65441 1.14468 1.11051 1.21051 0.75963 0.88236 0.84883 1.90734 1.50186 1.19510 1.84481 1.19961 0.99901 0.90775 0.93327 0.84160 1.21437 1.01517 0.97389 0.93211 1.21587 0.97451 0.97635 0.97775 1.20074 0.99013 0.98697 0.90021 1.20945 0.95959 0.97284 0.99208 1.70015 1.29005 1.18198 1.07468 1.25790 0.89064 0.97515 0.96825 1.43035 1.29060 1.27364 1.16209 0.73074 1.20517 1.04284 0.99811 0.90387 0.89639 0.92993 0.94210 0.97238 0.98246 0.94416 0.95950 0.95319 0.89886 0.88021 0.91990 0.93421 0.75477 0.89466 0.92817 0.90060 0.88834 0.89857 0.91268 0.74122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.17 71.98 0.66 -2.75 16 2 C -0.10 -3.28 3.01 -9.61 -0.03 -3.31 16 3 H 0.08 2.43 8.04 -2.39 -0.02 2.41 16 4 C 0.19 9.20 4.98 86.68 0.43 9.63 16 5 N -0.63 -33.01 3.40 -691.30 -2.35 -35.36 16 6 C -0.24 -14.11 10.28 84.03 0.86 -13.24 16 7 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 8 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 9 N -0.95 -58.06 10.33 21.65 0.22 -57.84 16 10 Si 0.98 46.92 29.55 68.60 2.03 48.95 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 14 C 0.13 5.33 5.89 86.85 0.51 5.84 16 15 C -0.08 -2.35 2.52 -9.40 -0.02 -2.37 16 16 H 0.07 2.23 8.05 -2.38 -0.02 2.21 16 17 C -0.10 -1.83 4.84 30.59 0.15 -1.69 16 18 C 0.12 2.55 5.52 86.38 0.48 3.03 16 19 N -0.72 -11.09 5.10 -463.06 -2.36 -13.45 16 20 C 0.51 10.47 7.13 87.66 0.63 11.09 16 21 O -0.57 -17.34 15.82 -3.04 -0.05 -17.39 16 22 C -0.02 -0.25 2.90 -12.17 -0.04 -0.28 16 23 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 24 C -0.10 -1.44 4.68 30.76 0.14 -1.30 16 25 C -0.11 -1.14 5.90 30.75 0.18 -0.96 16 26 C -0.04 -0.61 6.30 30.02 0.19 -0.43 16 27 C 0.00 -0.08 6.98 41.61 0.29 0.21 16 28 N -0.53 -11.46 11.25 -187.90 -2.11 -13.57 16 29 C 0.19 2.83 13.05 180.10 2.35 5.18 16 30 N -0.55 -6.94 5.90 -186.46 -1.10 -8.04 16 31 H 0.43 3.00 6.85 -92.71 -0.64 2.36 16 32 C -0.03 -0.54 6.32 41.14 0.26 -0.28 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.04 1.18 8.07 -2.39 -0.02 1.16 16 36 H 0.01 0.52 7.03 -2.38 -0.02 0.50 16 37 H 0.00 -0.04 7.51 -2.39 -0.02 -0.06 16 38 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 39 H 0.02 0.88 8.00 -2.39 -0.02 0.86 16 40 H 0.03 1.18 8.06 -2.39 -0.02 1.16 16 41 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 42 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.05 1.28 7.45 -2.39 -0.02 1.26 16 45 H 0.41 3.26 6.58 -92.71 -0.61 2.65 16 46 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.05 1.10 7.73 -2.39 -0.02 1.08 16 48 H 0.08 0.67 8.12 -2.39 -0.02 0.65 16 49 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 51 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.24 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -82.82 404.72 1.46 -81.36 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -0.32 Total: 10.38 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 7.51 Total: 4.95 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -7.70 Total: -128.25 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.05 Total: -17.39 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -82.82 1.46 -81.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103425652.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.792 kcal (2) G-P(sol) polarization free energy of solvation -82.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds