Wall clock time and date at job start Wed Apr 1 2020 04:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 110.63928 * 2 1 4 4 C 1.54324 * 110.87177 * 236.75234 * 2 1 3 5 5 N 1.47022 * 107.27087 * 219.37062 * 4 2 1 6 6 C 1.36931 * 125.64945 * 178.89220 * 5 4 2 7 7 H 1.08000 * 120.00260 * 180.02562 * 6 5 4 8 8 C 1.38811 * 119.99935 * 0.02660 * 6 5 4 9 9 N 1.31613 * 120.00293 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 120.00054 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47168 * 59.99817 * 10 8 6 12 12 H 1.48497 * 109.47157 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47054 * 299.99993 * 10 8 6 14 14 C 1.47424 * 108.70147 * 358.94130 * 5 4 2 15 15 C 1.54908 * 104.83609 * 24.12855 * 14 5 4 16 16 H 1.09001 * 111.03571 * 81.07742 * 15 14 5 17 17 C 1.53000 * 111.00416 * 204.92019 * 15 14 5 18 18 C 1.52997 * 109.47060 * 287.19204 * 17 15 14 19 19 N 1.46500 * 109.47473 * 180.02562 * 18 17 15 20 20 C 1.34777 * 120.00376 * 180.02562 * 19 18 17 21 21 O 1.21288 * 119.99593 * 0.02562 * 20 19 18 22 22 C 1.50701 * 120.00115 * 180.02562 * 20 19 18 23 23 H 1.08997 * 115.54870 * 34.32741 * 22 20 19 24 24 C 1.52995 * 117.49460 * 248.62086 * 22 20 19 25 25 C 1.53002 * 117.49595 * 179.97438 * 22 20 19 26 26 H 1.08997 * 117.49733 * 359.97438 * 25 22 20 27 27 C 1.50699 * 117.49531 * 215.00039 * 25 22 20 28 28 C 1.39870 * 126.04131 * 300.02319 * 27 25 22 29 29 N 1.30833 * 108.20180 * 179.97438 * 28 27 25 30 30 N 1.40086 * 108.20799 * 359.97438 * 29 28 27 31 31 C 1.46501 * 126.03686 * 179.97438 * 30 29 28 32 32 C 1.34946 * 107.92350 * 359.75993 * 30 29 28 33 33 H 1.09007 * 109.47312 * 296.85745 * 1 2 3 34 34 H 1.08998 * 109.47457 * 56.86003 * 1 2 3 35 35 H 1.09001 * 109.47180 * 176.86392 * 1 2 3 36 36 H 1.08998 * 109.87903 * 338.78456 * 4 2 1 37 37 H 1.08997 * 109.88399 * 99.80086 * 4 2 1 38 38 H 0.97000 * 120.00855 * 179.97438 * 9 8 6 39 39 H 1.09005 * 110.36647 * 265.28582 * 14 5 4 40 40 H 1.08997 * 110.36735 * 142.96804 * 14 5 4 41 41 H 1.09002 * 109.47398 * 47.19373 * 17 15 14 42 42 H 1.09001 * 109.47194 * 167.19554 * 17 15 14 43 43 H 1.09002 * 109.47153 * 300.00319 * 18 17 15 44 44 H 1.08998 * 109.47533 * 59.99948 * 18 17 15 45 45 H 0.97004 * 119.99396 * 0.02562 * 19 18 17 46 46 H 1.09003 * 117.50459 * 0.02562 * 24 22 20 47 47 H 1.09000 * 117.49745 * 145.02215 * 24 22 20 48 48 H 1.07997 * 125.89795 * 359.96206 * 28 27 25 49 49 H 1.08990 * 109.46829 * 89.98233 * 31 30 29 50 50 H 1.08998 * 109.46854 * 209.97843 * 31 30 29 51 51 H 1.08997 * 109.47473 * 329.97593 * 31 30 29 52 52 H 1.08005 * 126.12956 * 180.23426 * 32 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0798 -0.7906 -1.2059 5 7 3.2494 -1.5470 -0.7354 6 6 4.0114 -2.3930 -1.4960 7 1 4.8540 -2.9047 -1.0549 8 6 3.7009 -2.5930 -2.8341 9 7 2.6738 -1.9699 -3.3716 10 14 4.7410 -3.7466 -3.8719 11 1 4.7010 -5.1108 -3.2866 12 1 4.2046 -3.7866 -5.2561 13 1 6.1437 -3.2601 -3.8980 14 6 3.4651 -1.2446 0.6913 15 6 2.0789 -0.7934 1.2152 16 1 1.4465 -1.6525 1.4388 17 6 2.2237 0.1113 2.4406 18 6 2.6468 -0.7286 3.6474 19 7 2.7849 0.1374 4.8209 20 6 3.1524 -0.3877 6.0065 21 8 3.3693 -1.5773 6.1017 22 6 3.2938 0.5031 7.2138 23 1 2.5933 1.3364 7.2677 24 6 4.7033 0.7275 7.7648 25 6 3.7133 -0.1533 8.5307 26 1 3.8866 -1.2294 8.5239 27 6 3.1268 0.4024 9.8028 28 6 3.2671 1.7134 10.2697 29 7 2.6187 1.8157 11.4015 30 7 2.0440 0.5713 11.6907 31 6 1.2327 0.2492 12.8673 32 6 2.3657 -0.2770 10.6918 33 1 -0.3634 0.4643 0.9169 34 1 -0.3634 0.5618 -0.8605 35 1 -0.3633 -1.0261 -0.0562 36 1 1.3189 -1.4773 -1.5769 37 1 2.3749 -0.1017 -1.9974 38 1 2.4570 -2.1093 -4.3067 39 1 4.1929 -0.4408 0.8029 40 1 3.7992 -2.1363 1.2217 41 1 2.9797 0.8714 2.2438 42 1 1.2692 0.5940 2.6506 43 1 1.8908 -1.4888 3.8441 44 1 3.6013 -1.2114 3.4374 45 1 2.6117 1.0888 4.7446 46 1 5.5285 0.2312 7.2539 47 1 4.9305 1.7088 8.1813 48 1 3.8160 2.5045 9.7806 49 1 0.1827 0.4430 12.6486 50 1 1.3627 -0.8028 13.1213 51 1 1.5491 0.8676 13.7072 52 1 2.0712 -1.3134 10.6168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103457340.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:00 Heat of formation + Delta-G solvation = 81.148132 kcal Electronic energy + Delta-G solvation = -29106.045157 eV Core-core repulsion = 25108.435886 eV Total energy + Delta-G solvation = -3997.609271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.66375 -39.96850 -38.20118 -36.87590 -35.13209 -33.43507 -33.19128 -31.18903 -30.64012 -30.48068 -27.48426 -26.91415 -25.71142 -24.67527 -23.37549 -23.29249 -21.87651 -21.39817 -20.49954 -20.03803 -19.60436 -19.17473 -17.59981 -17.09514 -16.79531 -15.92703 -15.75650 -15.62862 -14.94737 -14.81083 -14.77026 -14.43556 -14.18519 -13.72925 -13.63417 -13.46553 -13.26891 -13.02697 -12.93021 -12.68897 -12.52945 -12.29817 -12.18625 -11.87995 -11.67599 -11.34510 -11.22143 -11.18165 -11.04707 -10.89969 -10.74386 -10.74129 -10.70960 -10.07123 -9.97367 -9.85060 -9.82819 -9.78781 -9.60218 -9.45124 -9.05951 -8.62004 -8.54522 -6.76328 -5.65527 -2.98479 1.46269 2.10253 2.20544 2.53779 3.11682 3.44350 3.48363 3.49622 3.72857 4.05019 4.43480 4.49412 4.54016 4.54883 4.65081 4.66707 4.78946 4.90863 4.92066 4.97627 5.04278 5.14275 5.26435 5.32334 5.41649 5.50450 5.53668 5.61907 5.64993 5.72269 5.72951 5.78978 5.96743 5.97639 6.04070 6.13358 6.22376 6.25973 6.28608 6.39552 6.44121 6.55624 6.56815 6.67316 6.70454 6.83842 7.05720 7.28206 7.46075 7.62815 7.70195 7.89522 8.18892 8.32422 9.28428 9.88956 10.55691 11.46031 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.001557 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.691404 B =17980.008479 C =18595.580561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.063 0.937 4 C 0.184 3.816 5 N -0.607 5.607 6 C -0.227 4.227 7 H 0.077 0.923 8 C -0.009 4.009 9 N -0.923 5.923 10 Si 0.911 3.089 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.140 3.860 15 C -0.095 4.095 16 H 0.076 0.924 17 C -0.116 4.116 18 C 0.118 3.882 19 N -0.725 5.725 20 C 0.540 3.460 21 O -0.542 6.542 22 C -0.184 4.184 23 H 0.122 0.878 24 C -0.143 4.143 25 C -0.039 4.039 26 H 0.124 0.876 27 C -0.207 4.207 28 C 0.054 3.946 29 N -0.298 5.298 30 N -0.378 5.378 31 C 0.101 3.899 32 C 0.066 3.934 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.039 0.961 38 H 0.252 0.748 39 H 0.017 0.983 40 H 0.037 0.963 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.400 0.600 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.182 0.818 49 H 0.075 0.925 50 H 0.088 0.912 51 H 0.089 0.911 52 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 8.908 29.668 31.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 H 0.082 0.918 4 C 0.059 3.941 5 N -0.333 5.333 6 C -0.355 4.355 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.571 5.571 10 Si 0.741 3.259 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.013 3.987 15 C -0.115 4.115 16 H 0.094 0.906 17 C -0.154 4.154 18 C -0.005 4.005 19 N -0.376 5.376 20 C 0.326 3.674 21 O -0.419 6.419 22 C -0.206 4.206 23 H 0.140 0.860 24 C -0.180 4.180 25 C -0.059 4.059 26 H 0.141 0.859 27 C -0.219 4.219 28 C -0.132 4.132 29 N -0.119 5.119 30 N -0.159 5.159 31 C -0.040 4.040 32 C -0.080 4.080 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.035 0.965 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.234 0.766 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.199 0.801 49 H 0.093 0.907 50 H 0.107 0.893 51 H 0.107 0.893 52 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.971 8.684 30.592 32.048 hybrid contribution 0.524 -0.635 -1.422 1.643 sum -3.447 8.048 29.170 30.456 Atomic orbital electron populations 1.21673 0.95603 1.01532 1.00230 1.22480 0.94908 0.98943 0.97062 0.91819 1.21190 0.89056 0.93077 0.90769 1.44457 1.32426 1.51576 1.04809 1.19031 1.07445 1.17749 0.91323 0.90560 1.24786 0.98448 1.00390 0.96892 1.69954 1.28801 1.45747 1.12568 0.86212 0.79505 0.80599 0.79536 1.21210 1.21634 1.21230 1.21617 0.93308 0.97067 0.86670 1.22331 0.98873 0.97584 0.92746 0.90572 1.21742 1.01420 0.98486 0.93761 1.21493 1.02219 0.93175 0.83606 1.46012 1.70054 1.12137 1.09364 1.19649 0.76277 0.87984 0.83485 1.90709 1.50173 1.15988 1.85018 1.22366 1.01444 1.02913 0.93859 0.85985 1.23041 0.91276 1.01775 1.01941 1.20198 1.00448 0.99014 0.86210 0.85858 1.19280 1.08753 0.94387 0.99468 1.23763 0.98863 0.97074 0.93493 1.77370 1.15217 1.01600 1.17745 1.48461 1.40990 1.07828 1.18662 1.21874 0.94381 1.02336 0.85407 1.22314 0.98812 0.97464 0.89421 0.93848 0.93023 0.92781 0.93500 0.94293 0.93808 0.96546 0.94495 0.91316 0.91668 0.91538 0.91011 0.76627 0.87782 0.87725 0.80067 0.90662 0.89345 0.89251 0.80673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.17 37.15 0.34 -1.72 16 2 C -0.11 -2.08 3.01 -88.79 -0.27 -2.34 16 3 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 4 C 0.18 4.47 4.97 -3.06 -0.02 4.46 16 5 N -0.61 -15.73 3.39 -170.08 -0.58 -16.31 16 6 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 7 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.45 10.31 55.49 0.57 -26.88 16 10 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.14 2.89 6.18 -2.53 -0.02 2.88 16 15 C -0.10 -1.60 2.45 -88.47 -0.22 -1.81 16 16 H 0.08 1.32 8.05 -51.93 -0.42 0.90 16 17 C -0.12 -1.44 4.84 -26.73 -0.13 -1.57 16 18 C 0.12 1.50 5.58 -4.04 -0.02 1.48 16 19 N -0.72 -7.62 5.56 -60.29 -0.33 -7.96 16 20 C 0.54 6.41 7.61 -10.98 -0.08 6.33 16 21 O -0.54 -8.65 16.26 5.55 0.09 -8.56 16 22 C -0.18 -1.56 5.89 -91.77 -0.54 -2.10 16 23 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 24 C -0.14 -1.03 9.73 -26.71 -0.26 -1.29 16 25 C -0.04 -0.33 5.76 -91.75 -0.53 -0.86 16 26 H 0.12 1.20 7.67 -51.93 -0.40 0.80 16 27 C -0.21 -1.71 5.76 -105.05 -0.61 -2.32 16 28 C 0.05 0.45 11.35 -17.37 -0.20 0.25 16 29 N -0.30 -2.91 12.58 30.62 0.39 -2.53 16 30 N -0.38 -2.92 4.01 -68.17 -0.27 -3.19 16 31 C 0.10 0.37 11.47 59.85 0.69 1.05 16 32 C 0.07 0.49 11.40 -17.22 -0.20 0.30 16 33 H 0.04 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.88 8.07 -51.93 -0.42 0.46 16 36 H 0.05 1.26 7.01 -51.93 -0.36 0.90 16 37 H 0.04 1.06 7.51 -51.93 -0.39 0.67 16 38 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.02 0.34 7.91 -51.93 -0.41 -0.07 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.84 7.96 -51.93 -0.41 0.42 16 42 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.04 7.75 -51.93 -0.40 0.64 16 45 H 0.40 3.05 8.47 -40.82 -0.35 2.71 16 46 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.10 0.54 6.98 -51.93 -0.36 0.18 16 48 H 0.18 1.03 7.20 -52.49 -0.38 0.65 16 49 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 50 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 51 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 52 H 0.18 0.85 8.06 -52.48 -0.42 0.42 16 LS Contribution 422.05 15.07 6.36 6.36 Total: -1.00 -35.97 422.05 -10.01 -45.98 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.91 Total: -0.11 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.30 Total: -4.27 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.23 Total: -56.86 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -35.97 -10.01 -45.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103457340.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.127 kcal (2) G-P(sol) polarization free energy of solvation -35.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds