Wall clock time and date at job start Wed Apr 1 2020 04:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 110.63928 * 2 1 4 4 C 1.54324 * 110.87177 * 236.75234 * 2 1 3 5 5 N 1.47022 * 107.27087 * 219.37062 * 4 2 1 6 6 C 1.36931 * 125.64945 * 178.89220 * 5 4 2 7 7 H 1.08000 * 120.00260 * 180.02562 * 6 5 4 8 8 C 1.38811 * 119.99935 * 0.02660 * 6 5 4 9 9 N 1.31613 * 120.00293 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 120.00054 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47168 * 59.99817 * 10 8 6 12 12 H 1.48497 * 109.47157 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47054 * 299.99993 * 10 8 6 14 14 C 1.47424 * 108.70147 * 358.94130 * 5 4 2 15 15 C 1.54908 * 104.83609 * 24.12855 * 14 5 4 16 16 H 1.09001 * 111.03571 * 81.07742 * 15 14 5 17 17 C 1.53000 * 111.00416 * 204.92019 * 15 14 5 18 18 C 1.52997 * 109.47060 * 287.19204 * 17 15 14 19 19 N 1.46500 * 109.47473 * 180.02562 * 18 17 15 20 20 C 1.34777 * 120.00376 * 180.02562 * 19 18 17 21 21 O 1.21288 * 119.99593 * 0.02562 * 20 19 18 22 22 C 1.50701 * 120.00115 * 180.02562 * 20 19 18 23 23 H 1.08997 * 115.54870 * 34.32741 * 22 20 19 24 24 C 1.52995 * 117.49460 * 248.62086 * 22 20 19 25 25 C 1.53002 * 117.49595 * 179.97438 * 22 20 19 26 26 H 1.08997 * 117.49733 * 359.97438 * 25 22 20 27 27 C 1.50699 * 117.49531 * 215.00039 * 25 22 20 28 28 C 1.39870 * 126.04131 * 300.02319 * 27 25 22 29 29 N 1.30833 * 108.20180 * 179.97438 * 28 27 25 30 30 N 1.40086 * 108.20799 * 359.97438 * 29 28 27 31 31 C 1.46501 * 126.03686 * 179.97438 * 30 29 28 32 32 C 1.34946 * 107.92350 * 359.75993 * 30 29 28 33 33 H 1.09007 * 109.47312 * 296.85745 * 1 2 3 34 34 H 1.08998 * 109.47457 * 56.86003 * 1 2 3 35 35 H 1.09001 * 109.47180 * 176.86392 * 1 2 3 36 36 H 1.08998 * 109.87903 * 338.78456 * 4 2 1 37 37 H 1.08997 * 109.88399 * 99.80086 * 4 2 1 38 38 H 0.97000 * 120.00855 * 179.97438 * 9 8 6 39 39 H 1.09005 * 110.36647 * 265.28582 * 14 5 4 40 40 H 1.08997 * 110.36735 * 142.96804 * 14 5 4 41 41 H 1.09002 * 109.47398 * 47.19373 * 17 15 14 42 42 H 1.09001 * 109.47194 * 167.19554 * 17 15 14 43 43 H 1.09002 * 109.47153 * 300.00319 * 18 17 15 44 44 H 1.08998 * 109.47533 * 59.99948 * 18 17 15 45 45 H 0.97004 * 119.99396 * 0.02562 * 19 18 17 46 46 H 1.09003 * 117.50459 * 0.02562 * 24 22 20 47 47 H 1.09000 * 117.49745 * 145.02215 * 24 22 20 48 48 H 1.07997 * 125.89795 * 359.96206 * 28 27 25 49 49 H 1.08990 * 109.46829 * 89.98233 * 31 30 29 50 50 H 1.08998 * 109.46854 * 209.97843 * 31 30 29 51 51 H 1.08997 * 109.47473 * 329.97593 * 31 30 29 52 52 H 1.08005 * 126.12956 * 180.23426 * 32 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0798 -0.7906 -1.2059 5 7 3.2494 -1.5470 -0.7354 6 6 4.0114 -2.3930 -1.4960 7 1 4.8540 -2.9047 -1.0549 8 6 3.7009 -2.5930 -2.8341 9 7 2.6738 -1.9699 -3.3716 10 14 4.7410 -3.7466 -3.8719 11 1 4.7010 -5.1108 -3.2866 12 1 4.2046 -3.7866 -5.2561 13 1 6.1437 -3.2601 -3.8980 14 6 3.4651 -1.2446 0.6913 15 6 2.0789 -0.7934 1.2152 16 1 1.4465 -1.6525 1.4388 17 6 2.2237 0.1113 2.4406 18 6 2.6468 -0.7286 3.6474 19 7 2.7849 0.1374 4.8209 20 6 3.1524 -0.3877 6.0065 21 8 3.3693 -1.5773 6.1017 22 6 3.2938 0.5031 7.2138 23 1 2.5933 1.3364 7.2677 24 6 4.7033 0.7275 7.7648 25 6 3.7133 -0.1533 8.5307 26 1 3.8866 -1.2294 8.5239 27 6 3.1268 0.4024 9.8028 28 6 3.2671 1.7134 10.2697 29 7 2.6187 1.8157 11.4015 30 7 2.0440 0.5713 11.6907 31 6 1.2327 0.2492 12.8673 32 6 2.3657 -0.2770 10.6918 33 1 -0.3634 0.4643 0.9169 34 1 -0.3634 0.5618 -0.8605 35 1 -0.3633 -1.0261 -0.0562 36 1 1.3189 -1.4773 -1.5769 37 1 2.3749 -0.1017 -1.9974 38 1 2.4570 -2.1093 -4.3067 39 1 4.1929 -0.4408 0.8029 40 1 3.7992 -2.1363 1.2217 41 1 2.9797 0.8714 2.2438 42 1 1.2692 0.5940 2.6506 43 1 1.8908 -1.4888 3.8441 44 1 3.6013 -1.2114 3.4374 45 1 2.6117 1.0888 4.7446 46 1 5.5285 0.2312 7.2539 47 1 4.9305 1.7088 8.1813 48 1 3.8160 2.5045 9.7806 49 1 0.1827 0.4430 12.6486 50 1 1.3627 -0.8028 13.1213 51 1 1.5491 0.8676 13.7072 52 1 2.0712 -1.3134 10.6168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103457340.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:59 Heat of formation + Delta-G solvation = 58.092943 kcal Electronic energy + Delta-G solvation = -29107.044905 eV Core-core repulsion = 25108.435886 eV Total energy + Delta-G solvation = -3998.609019 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.20998 -40.87398 -39.74235 -37.63551 -36.31607 -34.96725 -33.89237 -32.52886 -32.42438 -31.08781 -28.68513 -27.73692 -27.39588 -25.96330 -24.62117 -23.86262 -23.19821 -21.91607 -21.56906 -21.16783 -20.68153 -20.47677 -18.84372 -18.33203 -17.69564 -17.00919 -16.82096 -16.46554 -16.27514 -15.94088 -15.63814 -15.52458 -15.28513 -15.16968 -14.70902 -14.46580 -14.16253 -14.00695 -13.79448 -13.62486 -13.42860 -13.38644 -13.31737 -13.29254 -12.92114 -12.76268 -12.74184 -12.67472 -12.39207 -12.20037 -11.93038 -11.81328 -11.78010 -11.53790 -11.39934 -11.36499 -11.24359 -11.12466 -10.78941 -10.68270 -10.36865 -10.03502 -9.18066 -8.87103 -7.83926 -5.19158 0.92585 1.44137 1.47693 1.49531 1.53982 1.69315 1.78778 2.26318 2.49815 3.09184 3.33226 3.55037 3.67800 3.77229 3.83425 3.96591 3.98757 3.99570 4.06537 4.10279 4.26067 4.34950 4.37171 4.38940 4.43715 4.46674 4.54348 4.64348 4.71022 4.75935 4.77225 4.78783 4.85423 4.90668 5.02445 5.04391 5.08341 5.14819 5.16667 5.21472 5.30086 5.36096 5.41635 5.47621 5.51950 5.56741 5.69920 5.76877 5.85309 6.11459 6.22236 6.64157 6.73810 7.12333 7.32954 7.80616 8.45114 9.25782 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.001557 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.691404 B =17980.008479 C =18595.580561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.080 0.920 4 C 0.190 3.810 5 N -0.631 5.631 6 C -0.246 4.246 7 H 0.078 0.922 8 C -0.066 4.066 9 N -0.950 5.950 10 Si 0.978 3.022 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.277 1.277 14 C 0.133 3.867 15 C -0.080 4.080 16 H 0.070 0.930 17 C -0.099 4.099 18 C 0.124 3.876 19 N -0.712 5.712 20 C 0.535 3.465 21 O -0.590 6.590 22 C -0.180 4.180 23 H 0.145 0.855 24 C -0.130 4.130 25 C -0.042 4.042 26 H 0.104 0.896 27 C -0.220 4.220 28 C 0.052 3.948 29 N -0.335 5.335 30 N -0.381 5.381 31 C 0.092 3.908 32 C 0.062 3.938 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.039 0.961 36 H 0.009 0.991 37 H -0.001 1.001 38 H 0.246 0.754 39 H 0.025 0.975 40 H 0.031 0.969 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.418 0.582 46 H 0.094 0.906 47 H 0.131 0.869 48 H 0.203 0.797 49 H 0.084 0.916 50 H 0.112 0.888 51 H 0.091 0.909 52 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 10.435 31.752 33.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.121 4.121 3 H 0.099 0.901 4 C 0.065 3.935 5 N -0.357 5.357 6 C -0.375 4.375 7 H 0.096 0.904 8 C -0.259 4.259 9 N -0.599 5.599 10 Si 0.806 3.194 11 H -0.204 1.204 12 H -0.218 1.218 13 H -0.203 1.203 14 C 0.008 3.992 15 C -0.100 4.100 16 H 0.088 0.912 17 C -0.137 4.137 18 C 0.000 4.000 19 N -0.363 5.363 20 C 0.323 3.677 21 O -0.471 6.471 22 C -0.201 4.201 23 H 0.163 0.837 24 C -0.167 4.167 25 C -0.062 4.062 26 H 0.122 0.878 27 C -0.232 4.232 28 C -0.133 4.133 29 N -0.157 5.157 30 N -0.163 5.163 31 C -0.048 4.048 32 C -0.085 4.085 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.017 0.983 38 H 0.055 0.945 39 H 0.042 0.958 40 H 0.049 0.951 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.255 0.745 46 H 0.113 0.887 47 H 0.149 0.851 48 H 0.220 0.780 49 H 0.102 0.898 50 H 0.130 0.870 51 H 0.109 0.891 52 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -4.356 10.260 32.719 34.566 hybrid contribution 0.667 -1.161 -2.028 2.430 sum -3.689 9.099 30.691 32.223 Atomic orbital electron populations 1.21631 0.93230 1.01209 1.02343 1.22365 0.96742 0.98672 0.94319 0.90124 1.20993 0.87833 0.91936 0.92714 1.44813 1.32574 1.51382 1.06941 1.19433 1.07856 1.18135 0.92113 0.90409 1.25643 0.99879 1.02271 0.98135 1.70189 1.30292 1.47090 1.12327 0.85170 0.78092 0.78716 0.77470 1.20448 1.21806 1.20305 1.21837 0.96089 0.97103 0.84161 1.22203 0.95734 0.98034 0.94016 0.91199 1.21587 1.03527 0.97459 0.91087 1.21251 1.00709 0.93394 0.84622 1.45847 1.69281 1.12831 1.08349 1.20259 0.75178 0.87751 0.84497 1.90692 1.52311 1.18265 1.85809 1.22338 1.02895 1.02798 0.92116 0.83701 1.23140 0.90227 1.02622 1.00722 1.20069 1.01366 0.98266 0.86505 0.87754 1.19324 1.09534 0.94708 0.99621 1.24122 0.98495 0.97585 0.93098 1.77311 1.16541 1.03083 1.18751 1.48778 1.40863 1.07253 1.19435 1.22177 0.94373 1.03895 0.84307 1.22741 0.98215 0.98341 0.89174 0.89875 0.92940 0.94167 0.97240 0.98288 0.94462 0.95750 0.95072 0.90112 0.88512 0.92564 0.93331 0.74506 0.88716 0.85059 0.78022 0.89750 0.86973 0.89073 0.78668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.17 71.98 0.66 -3.00 16 2 C -0.10 -3.55 3.01 -9.61 -0.03 -3.58 16 3 H 0.08 2.58 8.04 -2.38 -0.02 2.56 16 4 C 0.19 9.56 4.97 86.73 0.43 9.99 16 5 N -0.63 -33.60 3.39 -692.00 -2.35 -35.95 16 6 C -0.25 -14.40 10.28 84.03 0.86 -13.54 16 7 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 8 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 9 N -0.95 -58.69 10.31 21.65 0.22 -58.46 16 10 Si 0.98 47.17 29.55 68.60 2.03 49.20 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 C 0.13 5.51 6.18 86.85 0.54 6.05 16 15 C -0.08 -2.56 2.45 -9.40 -0.02 -2.58 16 16 H 0.07 2.35 8.05 -2.39 -0.02 2.33 16 17 C -0.10 -2.13 4.84 30.59 0.15 -1.98 16 18 C 0.12 2.94 5.58 86.38 0.48 3.42 16 19 N -0.71 -13.21 5.56 -463.06 -2.57 -15.79 16 20 C 0.54 11.97 7.61 87.66 0.67 12.64 16 21 O -0.59 -18.90 16.26 -3.05 -0.05 -18.95 16 22 C -0.18 -2.65 5.89 -11.54 -0.07 -2.72 16 23 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 24 C -0.13 -1.60 9.73 30.61 0.30 -1.31 16 25 C -0.04 -0.66 5.76 -11.52 -0.07 -0.73 16 26 H 0.10 2.04 7.67 -2.39 -0.02 2.03 16 27 C -0.22 -3.29 5.76 -20.14 -0.12 -3.41 16 28 C 0.05 0.77 11.35 85.24 0.97 1.74 16 29 N -0.34 -6.11 12.58 -57.03 -0.72 -6.82 16 30 N -0.38 -5.34 4.01 -369.58 -1.48 -6.82 16 31 C 0.09 0.52 11.47 127.77 1.47 1.98 16 32 C 0.06 0.84 11.40 83.54 0.95 1.79 16 33 H 0.08 1.77 8.09 -2.38 -0.02 1.75 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.04 1.26 8.07 -2.39 -0.02 1.25 16 36 H 0.01 0.53 7.01 -2.39 -0.02 0.52 16 37 H 0.00 -0.06 7.51 -2.39 -0.02 -0.08 16 38 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 39 H 0.02 0.99 7.91 -2.38 -0.02 0.97 16 40 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.63 7.96 -2.39 -0.02 1.61 16 42 H 0.10 1.59 8.09 -2.39 -0.02 1.57 16 43 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.05 1.39 7.75 -2.39 -0.02 1.37 16 45 H 0.42 4.78 8.47 -92.71 -0.79 4.00 16 46 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.13 0.92 6.98 -2.39 -0.02 0.90 16 48 H 0.20 1.75 7.20 -2.91 -0.02 1.73 16 49 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 51 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 52 H 0.20 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -82.65 422.05 2.84 -79.82 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.12 Total: 12.44 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 7.64 Total: 1.33 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -6.90 Total: -123.85 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.05 Total: -18.95 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -82.65 2.84 -79.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103457340.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.912 kcal (2) G-P(sol) polarization free energy of solvation -82.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds