Wall clock time and date at job start Wed Apr 1 2020 04:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.91759 * 2 1 4 4 C 1.54911 * 111.00049 * 236.10387 * 2 1 3 5 5 N 1.47428 * 104.83117 * 204.91401 * 4 2 1 6 6 C 1.36936 * 125.65064 * 204.08750 * 5 4 2 7 7 H 1.08000 * 119.99664 * 168.09853 * 6 5 4 8 8 C 1.38814 * 119.99940 * 348.10380 * 6 5 4 9 9 N 1.31611 * 119.99770 * 325.97326 * 8 6 5 10 10 Si 1.86803 * 119.99856 * 145.97398 * 8 6 5 11 11 H 1.48498 * 109.47176 * 59.99787 * 10 8 6 12 12 H 1.48504 * 109.47098 * 299.99679 * 10 8 6 13 13 H 1.48503 * 109.46709 * 179.97438 * 10 8 6 14 14 C 1.47029 * 108.69950 * 24.35676 * 5 4 2 15 15 C 1.54326 * 107.26545 * 358.58471 * 14 5 4 16 16 H 1.09005 * 110.67113 * 96.52339 * 15 14 5 17 17 C 1.53004 * 110.84969 * 219.67235 * 15 14 5 18 18 C 1.52998 * 109.46973 * 288.69629 * 17 15 14 19 19 N 1.46502 * 109.46866 * 179.97438 * 18 17 15 20 20 C 1.34776 * 120.00018 * 179.97438 * 19 18 17 21 21 O 1.21279 * 120.00073 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99942 * 180.02562 * 20 19 18 23 23 H 1.09004 * 109.47569 * 60.00114 * 22 20 19 24 24 C 1.53119 * 109.47354 * 180.02562 * 22 20 19 25 25 C 1.53360 * 109.52711 * 190.00724 * 24 22 20 26 26 C 1.50863 * 108.41018 * 310.02059 * 25 24 22 27 27 N 1.33581 * 128.02988 * 196.77237 * 26 25 24 28 28 C 1.30751 * 109.14512 * 179.84327 * 27 26 25 29 29 N 1.35305 * 108.76839 * 0.02562 * 28 27 26 30 30 H 0.97006 * 126.49651 * 180.02562 * 29 28 27 31 31 C 1.35027 * 123.99246 * 16.66111 * 26 25 24 32 32 C 1.50653 * 124.45259 * 0.17128 * 31 26 25 33 33 H 1.09005 * 109.46919 * 182.44745 * 1 2 3 34 34 H 1.09000 * 109.46841 * 302.44616 * 1 2 3 35 35 H 1.08995 * 109.47319 * 62.44579 * 1 2 3 36 36 H 1.09001 * 110.37176 * 86.07693 * 4 2 1 37 37 H 1.09004 * 110.36966 * 323.75279 * 4 2 1 38 38 H 0.97001 * 120.00692 * 354.24878 * 9 8 6 39 39 H 1.09001 * 109.88100 * 118.13374 * 14 5 4 40 40 H 1.09001 * 109.88095 * 239.29376 * 14 5 4 41 41 H 1.08999 * 109.46578 * 48.69526 * 17 15 14 42 42 H 1.09000 * 109.47220 * 168.69226 * 17 15 14 43 43 H 1.08999 * 109.47385 * 299.99404 * 18 17 15 44 44 H 1.08993 * 109.47304 * 60.00082 * 18 17 15 45 45 H 0.97004 * 120.00259 * 359.97438 * 19 18 17 46 46 H 1.09002 * 109.46233 * 310.02351 * 24 22 20 47 47 H 1.08995 * 109.46553 * 69.98735 * 24 22 20 48 48 H 1.08994 * 109.66674 * 190.29581 * 25 24 22 49 49 H 1.09009 * 109.71610 * 69.77361 * 25 24 22 50 50 H 1.07997 * 125.61385 * 179.97438 * 28 27 26 51 51 H 1.09000 * 109.68290 * 256.68284 * 32 31 26 52 52 H 1.08990 * 109.71335 * 136.14088 * 32 31 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8065 -1.2004 5 7 3.4271 -1.2430 -0.7736 6 6 4.4640 -1.5667 -1.6074 7 1 5.4600 -1.6890 -1.2082 8 6 4.2348 -1.7375 -2.9658 9 7 3.0950 -2.2474 -3.3819 10 14 5.5441 -1.2435 -4.2033 11 1 6.7842 -2.0196 -3.9483 12 1 5.8313 0.2072 -4.0675 13 1 5.0577 -1.5258 -5.5777 14 6 3.4658 -1.2795 0.6958 15 6 2.0862 -0.8080 1.2021 16 1 1.4451 -1.6615 1.4227 17 6 2.2351 0.0874 2.4338 18 6 2.6653 -0.7610 3.6321 19 7 2.8084 0.0965 4.8112 20 6 3.1815 -0.4372 5.9913 21 8 3.3983 -1.6273 6.0771 22 6 3.3281 0.4449 7.2044 23 1 2.3739 0.9246 7.4224 24 6 3.7588 -0.4041 8.4037 25 6 3.6673 0.4344 9.6846 26 6 4.3813 1.7424 9.4498 27 7 4.8077 2.6222 10.3600 28 6 5.3814 3.6264 9.7501 29 7 5.3342 3.4094 8.4153 30 1 5.6849 3.9918 7.7234 31 6 4.7013 2.2191 8.2276 32 6 4.3893 1.5183 6.9310 33 1 -0.3633 -1.0268 0.0439 34 1 -0.3633 0.5514 0.8673 35 1 -0.3634 0.4754 -0.9110 36 1 2.1559 -0.1719 -2.0838 37 1 1.4518 -1.6703 -1.4026 38 1 2.4495 -2.5809 -2.7392 39 1 3.6602 -2.2965 1.0364 40 1 4.2424 -0.6086 1.0629 41 1 2.9889 0.8503 2.2393 42 1 1.2808 0.5669 2.6518 43 1 1.9114 -1.5239 3.8265 44 1 3.6195 -1.2404 3.4140 45 1 2.6346 1.0484 4.7428 46 1 3.1032 -1.2707 8.4893 47 1 4.7862 -0.7389 8.2615 48 1 4.1416 -0.1001 10.5075 49 1 2.6213 0.6252 9.9252 50 1 5.8199 4.4875 10.2322 51 1 5.2927 1.0501 6.5401 52 1 4.0060 2.2375 6.2074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103620759.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:35 Heat of formation + Delta-G solvation = 15.473825 kcal Electronic energy + Delta-G solvation = -30009.567015 eV Core-core repulsion = 26009.109892 eV Total energy + Delta-G solvation = -4000.457123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.67934 -40.15929 -38.44158 -36.60237 -35.37202 -33.65951 -33.40430 -31.49669 -30.74374 -30.15954 -29.56827 -26.86143 -25.84946 -24.62713 -23.99451 -22.97177 -22.00434 -21.92279 -20.66022 -19.87511 -19.46471 -19.21917 -18.30173 -17.41846 -17.22477 -16.10134 -15.98909 -15.66840 -15.22565 -14.80578 -14.56315 -14.32826 -14.17793 -13.94101 -13.68736 -13.66812 -13.66210 -13.34135 -13.10668 -13.00787 -12.46577 -12.31632 -12.18390 -11.92448 -11.84128 -11.70828 -11.43153 -11.28063 -11.25697 -11.06172 -10.72318 -10.46290 -10.29093 -10.23114 -10.21295 -10.12512 -10.01285 -9.92251 -9.77449 -9.54251 -9.19805 -8.55307 -8.31878 -6.93673 -6.13934 -3.06091 1.60620 2.36930 2.71055 2.73569 2.98431 3.51001 3.55029 3.73050 3.99621 4.24589 4.31977 4.38556 4.60752 4.69060 4.76469 4.79890 4.85522 4.94258 4.98027 5.06867 5.12249 5.19485 5.20649 5.32051 5.35101 5.43345 5.49793 5.55024 5.60626 5.66462 5.72925 5.79380 5.85834 5.90043 5.95531 5.97474 6.05503 6.12353 6.18027 6.23849 6.33147 6.37287 6.39816 6.52116 6.65577 6.87077 6.95956 7.01972 7.09987 7.29989 7.69098 7.81892 8.03742 8.50514 9.03156 9.84265 10.41108 11.20741 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016494 B = 0.001863 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.138848 B =15022.535532 C =15616.575848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 H 0.072 0.928 4 C 0.151 3.849 5 N -0.604 5.604 6 C -0.343 4.343 7 H 0.066 0.934 8 C -0.023 4.023 9 N -0.908 5.908 10 Si 1.055 2.945 11 H -0.293 1.293 12 H -0.295 1.295 13 H -0.286 1.286 14 C 0.140 3.860 15 C -0.092 4.092 16 H 0.074 0.926 17 C -0.115 4.115 18 C 0.117 3.883 19 N -0.729 5.729 20 C 0.515 3.485 21 O -0.533 6.533 22 C -0.099 4.099 23 H 0.103 0.897 24 C -0.099 4.099 25 C -0.035 4.035 26 C 0.007 3.993 27 N -0.486 5.486 28 C 0.178 3.822 29 N -0.560 5.560 30 H 0.421 0.579 31 C -0.026 4.026 32 C -0.033 4.033 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.023 0.977 38 H 0.268 0.732 39 H 0.020 0.980 40 H 0.024 0.976 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.398 0.602 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.077 0.923 50 H 0.209 0.791 51 H 0.085 0.915 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.730 13.599 24.256 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 H 0.090 0.910 4 C 0.025 3.975 5 N -0.330 5.330 6 C -0.470 4.470 7 H 0.084 0.916 8 C -0.226 4.226 9 N -0.548 5.548 10 Si 0.885 3.115 11 H -0.220 1.220 12 H -0.222 1.222 13 H -0.211 1.211 14 C 0.015 3.985 15 C -0.112 4.112 16 H 0.093 0.907 17 C -0.154 4.154 18 C -0.006 4.006 19 N -0.380 5.380 20 C 0.301 3.699 21 O -0.409 6.409 22 C -0.121 4.121 23 H 0.121 0.879 24 C -0.138 4.138 25 C -0.073 4.073 26 C -0.123 4.123 27 N -0.205 5.205 28 C -0.105 4.105 29 N -0.163 5.163 30 H 0.259 0.741 31 C -0.143 4.143 32 C -0.072 4.072 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.042 0.958 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.232 0.768 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.101 0.899 49 H 0.096 0.904 50 H 0.225 0.775 51 H 0.103 0.897 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.234 12.704 23.503 26.745 hybrid contribution 0.051 0.891 0.406 0.980 sum -1.183 13.595 23.909 27.529 Atomic orbital electron populations 1.21674 0.95310 1.01524 1.00891 1.22421 0.94604 0.99154 0.96289 0.90964 1.21535 0.86548 0.95131 0.94246 1.44589 1.10466 1.78188 0.99796 1.19682 0.87377 1.49150 0.90783 0.91647 1.25636 1.02056 0.98632 0.96228 1.70783 1.11051 1.35220 1.37755 0.83661 0.74953 0.76412 0.76461 1.22040 1.22239 1.21148 1.21372 0.93488 0.97409 0.86260 1.22151 0.98255 0.97584 0.93188 0.90714 1.21769 1.01497 0.98422 0.93674 1.21495 1.02305 0.93318 0.83510 1.46112 1.70108 1.12092 1.09712 1.20480 0.76591 0.88737 0.84112 1.90735 1.49389 1.15919 1.84838 1.21331 1.00566 0.95944 0.94286 0.87915 1.21447 1.03336 0.97575 0.91394 1.19985 0.99445 0.89802 0.98044 1.20594 1.05059 0.98397 0.88227 1.69996 1.14539 1.02468 1.33502 1.25068 1.04629 1.01153 0.79623 1.42947 1.45396 1.18250 1.09687 0.74149 1.20796 1.05743 0.89750 0.97991 1.19993 0.99331 0.95853 0.92008 0.92783 0.93343 0.92759 0.93268 0.95903 0.92120 0.96164 0.95805 0.91218 0.91527 0.91408 0.90952 0.76793 0.89697 0.90841 0.89938 0.90447 0.77479 0.89654 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.29 37.16 0.35 -1.55 16 2 C -0.11 -1.78 3.09 -88.47 -0.27 -2.05 16 3 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 4 C 0.15 3.47 4.81 -2.53 -0.01 3.45 16 5 N -0.60 -15.38 3.33 -170.06 -0.57 -15.94 16 6 C -0.34 -9.81 9.97 -15.06 -0.15 -9.96 16 7 H 0.07 1.88 8.02 -52.49 -0.42 1.46 16 8 C -0.02 -0.67 4.95 -17.43 -0.09 -0.76 16 9 N -0.91 -27.58 12.87 55.49 0.71 -26.86 16 10 Si 1.06 25.49 30.03 -169.99 -5.10 20.39 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.14 2.89 6.24 -3.06 -0.02 2.87 16 15 C -0.09 -1.46 2.39 -88.78 -0.21 -1.67 16 16 H 0.07 1.18 8.01 -51.93 -0.42 0.76 16 17 C -0.12 -1.34 4.73 -26.73 -0.13 -1.46 16 18 C 0.12 1.37 5.56 -4.04 -0.02 1.35 16 19 N -0.73 -6.71 5.46 -60.30 -0.33 -7.04 16 20 C 0.52 5.47 7.13 -10.98 -0.08 5.39 16 21 O -0.53 -8.01 15.81 5.56 0.09 -7.92 16 22 C -0.10 -0.75 2.50 -91.50 -0.23 -0.98 16 23 H 0.10 0.63 8.12 -51.93 -0.42 0.21 16 24 C -0.10 -0.84 4.64 -26.48 -0.12 -0.96 16 25 C -0.03 -0.28 6.30 -27.62 -0.17 -0.46 16 26 C 0.01 0.07 6.98 -82.89 -0.58 -0.51 16 27 N -0.49 -5.07 11.25 -10.74 -0.12 -5.19 16 28 C 0.18 1.23 13.05 -89.93 -1.17 0.06 16 29 N -0.56 -3.23 6.14 -10.29 -0.06 -3.30 16 30 H 0.42 1.06 8.96 -40.82 -0.37 0.69 16 31 C -0.03 -0.21 7.08 -81.86 -0.58 -0.79 16 32 C -0.03 -0.21 5.43 -27.70 -0.15 -0.37 16 33 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 1.25 7.82 -51.93 -0.41 0.84 16 37 H 0.02 0.57 6.92 -51.93 -0.36 0.21 16 38 H 0.27 8.19 6.45 -40.82 -0.26 7.93 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.02 0.49 7.69 -51.93 -0.40 0.09 16 41 H 0.07 0.81 7.94 -51.93 -0.41 0.39 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.01 7.68 -51.93 -0.40 0.61 16 45 H 0.40 2.49 8.15 -40.82 -0.33 2.16 16 46 H 0.08 0.75 7.76 -51.93 -0.40 0.35 16 47 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 50 H 0.21 0.60 8.06 -52.49 -0.42 0.18 16 51 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 52 H 0.08 0.36 7.90 -51.93 -0.41 -0.06 16 LS Contribution 409.22 15.07 6.17 6.17 Total: -1.00 -36.87 409.22 -11.73 -48.59 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -8.87 Total: -0.51 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -3.64 Total: -8.39 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.36 Total: -58.33 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.09 Total: -7.92 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.10 Total: 20.39 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.87 -11.73 -48.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103620759.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.069 kcal (2) G-P(sol) polarization free energy of solvation -36.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds