Wall clock time and date at job start Wed Apr 1 2020 04:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.91759 * 2 1 4 4 C 1.54911 * 111.00049 * 236.10387 * 2 1 3 5 5 N 1.47428 * 104.83117 * 204.91401 * 4 2 1 6 6 C 1.36936 * 125.65064 * 204.08750 * 5 4 2 7 7 H 1.08000 * 119.99664 * 168.09853 * 6 5 4 8 8 C 1.38814 * 119.99940 * 348.10380 * 6 5 4 9 9 N 1.31611 * 119.99770 * 325.97326 * 8 6 5 10 10 Si 1.86803 * 119.99856 * 145.97398 * 8 6 5 11 11 H 1.48498 * 109.47176 * 59.99787 * 10 8 6 12 12 H 1.48504 * 109.47098 * 299.99679 * 10 8 6 13 13 H 1.48503 * 109.46709 * 179.97438 * 10 8 6 14 14 C 1.47029 * 108.69950 * 24.35676 * 5 4 2 15 15 C 1.54326 * 107.26545 * 358.58471 * 14 5 4 16 16 H 1.09005 * 110.67113 * 96.52339 * 15 14 5 17 17 C 1.53004 * 110.84969 * 219.67235 * 15 14 5 18 18 C 1.52998 * 109.46973 * 288.69629 * 17 15 14 19 19 N 1.46502 * 109.46866 * 179.97438 * 18 17 15 20 20 C 1.34776 * 120.00018 * 179.97438 * 19 18 17 21 21 O 1.21279 * 120.00073 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99942 * 180.02562 * 20 19 18 23 23 H 1.09004 * 109.47569 * 60.00114 * 22 20 19 24 24 C 1.53119 * 109.47354 * 180.02562 * 22 20 19 25 25 C 1.53360 * 109.52711 * 190.00724 * 24 22 20 26 26 C 1.50863 * 108.41018 * 310.02059 * 25 24 22 27 27 N 1.33581 * 128.02988 * 196.77237 * 26 25 24 28 28 C 1.30751 * 109.14512 * 179.84327 * 27 26 25 29 29 N 1.35305 * 108.76839 * 0.02562 * 28 27 26 30 30 H 0.97006 * 126.49651 * 180.02562 * 29 28 27 31 31 C 1.35027 * 123.99246 * 16.66111 * 26 25 24 32 32 C 1.50653 * 124.45259 * 0.17128 * 31 26 25 33 33 H 1.09005 * 109.46919 * 182.44745 * 1 2 3 34 34 H 1.09000 * 109.46841 * 302.44616 * 1 2 3 35 35 H 1.08995 * 109.47319 * 62.44579 * 1 2 3 36 36 H 1.09001 * 110.37176 * 86.07693 * 4 2 1 37 37 H 1.09004 * 110.36966 * 323.75279 * 4 2 1 38 38 H 0.97001 * 120.00692 * 354.24878 * 9 8 6 39 39 H 1.09001 * 109.88100 * 118.13374 * 14 5 4 40 40 H 1.09001 * 109.88095 * 239.29376 * 14 5 4 41 41 H 1.08999 * 109.46578 * 48.69526 * 17 15 14 42 42 H 1.09000 * 109.47220 * 168.69226 * 17 15 14 43 43 H 1.08999 * 109.47385 * 299.99404 * 18 17 15 44 44 H 1.08993 * 109.47304 * 60.00082 * 18 17 15 45 45 H 0.97004 * 120.00259 * 359.97438 * 19 18 17 46 46 H 1.09002 * 109.46233 * 310.02351 * 24 22 20 47 47 H 1.08995 * 109.46553 * 69.98735 * 24 22 20 48 48 H 1.08994 * 109.66674 * 190.29581 * 25 24 22 49 49 H 1.09009 * 109.71610 * 69.77361 * 25 24 22 50 50 H 1.07997 * 125.61385 * 179.97438 * 28 27 26 51 51 H 1.09000 * 109.68290 * 256.68284 * 32 31 26 52 52 H 1.08990 * 109.71335 * 136.14088 * 32 31 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8065 -1.2004 5 7 3.4271 -1.2430 -0.7736 6 6 4.4640 -1.5667 -1.6074 7 1 5.4600 -1.6890 -1.2082 8 6 4.2348 -1.7375 -2.9658 9 7 3.0950 -2.2474 -3.3819 10 14 5.5441 -1.2435 -4.2033 11 1 6.7842 -2.0196 -3.9483 12 1 5.8313 0.2072 -4.0675 13 1 5.0577 -1.5258 -5.5777 14 6 3.4658 -1.2795 0.6958 15 6 2.0862 -0.8080 1.2021 16 1 1.4451 -1.6615 1.4227 17 6 2.2351 0.0874 2.4338 18 6 2.6653 -0.7610 3.6321 19 7 2.8084 0.0965 4.8112 20 6 3.1815 -0.4372 5.9913 21 8 3.3983 -1.6273 6.0771 22 6 3.3281 0.4449 7.2044 23 1 2.3739 0.9246 7.4224 24 6 3.7588 -0.4041 8.4037 25 6 3.6673 0.4344 9.6846 26 6 4.3813 1.7424 9.4498 27 7 4.8077 2.6222 10.3600 28 6 5.3814 3.6264 9.7501 29 7 5.3342 3.4094 8.4153 30 1 5.6849 3.9918 7.7234 31 6 4.7013 2.2191 8.2276 32 6 4.3893 1.5183 6.9310 33 1 -0.3633 -1.0268 0.0439 34 1 -0.3633 0.5514 0.8673 35 1 -0.3634 0.4754 -0.9110 36 1 2.1559 -0.1719 -2.0838 37 1 1.4518 -1.6703 -1.4026 38 1 2.4495 -2.5809 -2.7392 39 1 3.6602 -2.2965 1.0364 40 1 4.2424 -0.6086 1.0629 41 1 2.9889 0.8503 2.2393 42 1 1.2808 0.5669 2.6518 43 1 1.9114 -1.5239 3.8265 44 1 3.6195 -1.2404 3.4140 45 1 2.6346 1.0484 4.7428 46 1 3.1032 -1.2707 8.4893 47 1 4.7862 -0.7389 8.2615 48 1 4.1416 -0.1001 10.5075 49 1 2.6213 0.6252 9.9252 50 1 5.8199 4.4875 10.2322 51 1 5.2927 1.0501 6.5401 52 1 4.0060 2.2375 6.2074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103620759.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:34 Heat of formation + Delta-G solvation = -8.652042 kcal Electronic energy + Delta-G solvation = -30010.613191 eV Core-core repulsion = 26009.109892 eV Total energy + Delta-G solvation = -4001.503299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.22053 -41.02096 -39.94744 -37.32058 -36.50435 -35.21613 -34.13648 -32.61328 -32.55664 -30.86530 -30.22417 -28.27868 -27.56336 -25.75071 -24.92091 -23.94051 -23.19374 -22.49942 -21.62135 -21.40023 -20.73540 -19.87055 -19.50720 -18.82293 -17.99926 -17.07406 -16.88287 -16.57551 -16.19924 -16.10881 -15.60218 -15.50362 -15.29536 -15.14955 -14.87004 -14.76922 -14.62436 -14.35184 -14.22195 -13.97918 -13.70277 -13.57008 -13.30644 -12.93294 -12.90438 -12.66326 -12.58208 -12.48401 -12.39990 -12.26576 -12.03357 -11.92565 -11.92279 -11.73957 -11.54674 -11.45789 -11.25559 -10.92065 -10.80448 -10.74307 -10.46504 -10.09375 -9.11394 -9.04295 -8.41768 -5.29523 1.08213 1.54804 1.58049 1.62290 1.82290 2.10292 2.15837 2.30281 2.62514 3.10296 3.43731 3.54270 3.59890 3.65520 3.77338 3.79842 3.84353 3.91984 4.11275 4.18622 4.23731 4.30258 4.32451 4.38734 4.45305 4.52869 4.55187 4.60490 4.62364 4.68424 4.75097 4.76436 4.85611 4.90663 4.92534 5.01257 5.06158 5.08691 5.12130 5.16222 5.19072 5.27856 5.32899 5.33216 5.39389 5.45527 5.56282 5.65631 5.79558 6.27579 6.56650 6.59284 6.87808 7.15308 7.26444 7.70354 8.29595 8.92351 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016494 B = 0.001863 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.138848 B =15022.535532 C =15616.575848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 H 0.084 0.916 4 C 0.152 3.848 5 N -0.628 5.628 6 C -0.356 4.356 7 H 0.057 0.943 8 C -0.077 4.077 9 N -0.934 5.934 10 Si 1.111 2.889 11 H -0.276 1.276 12 H -0.279 1.279 13 H -0.290 1.290 14 C 0.134 3.866 15 C -0.078 4.078 16 H 0.075 0.925 17 C -0.099 4.099 18 C 0.123 3.877 19 N -0.712 5.712 20 C 0.516 3.484 21 O -0.583 6.583 22 C -0.088 4.088 23 H 0.126 0.874 24 C -0.094 4.094 25 C -0.029 4.029 26 C -0.024 4.024 27 N -0.533 5.533 28 C 0.184 3.816 29 N -0.549 5.549 30 H 0.437 0.563 31 C -0.027 4.027 32 C -0.027 4.027 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.014 0.986 37 H -0.003 1.003 38 H 0.252 0.748 39 H 0.001 0.999 40 H 0.030 0.970 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.044 0.956 45 H 0.418 0.582 46 H 0.075 0.925 47 H 0.055 0.945 48 H 0.074 0.926 49 H 0.085 0.915 50 H 0.243 0.757 51 H 0.077 0.923 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.126 16.939 25.299 30.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 H 0.102 0.898 4 C 0.026 3.974 5 N -0.355 5.355 6 C -0.484 4.484 7 H 0.075 0.925 8 C -0.274 4.274 9 N -0.576 5.576 10 Si 0.935 3.065 11 H -0.202 1.202 12 H -0.206 1.206 13 H -0.216 1.216 14 C 0.010 3.990 15 C -0.098 4.098 16 H 0.094 0.906 17 C -0.137 4.137 18 C -0.001 4.001 19 N -0.365 5.365 20 C 0.303 3.697 21 O -0.463 6.463 22 C -0.110 4.110 23 H 0.144 0.856 24 C -0.133 4.133 25 C -0.067 4.067 26 C -0.153 4.153 27 N -0.252 5.252 28 C -0.099 4.099 29 N -0.153 5.153 30 H 0.278 0.722 31 C -0.145 4.145 32 C -0.066 4.066 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.015 0.985 38 H 0.062 0.938 39 H 0.019 0.981 40 H 0.048 0.952 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.255 0.745 46 H 0.094 0.906 47 H 0.074 0.926 48 H 0.093 0.907 49 H 0.103 0.897 50 H 0.259 0.741 51 H 0.095 0.905 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.633 16.102 24.562 29.415 hybrid contribution 0.229 -0.184 0.140 0.325 sum -1.404 15.919 24.702 29.420 Atomic orbital electron populations 1.21653 0.92444 1.01926 1.02769 1.22337 0.96776 0.98517 0.93207 0.89783 1.21519 0.85554 0.94416 0.95896 1.44936 1.10729 1.78091 1.01753 1.19940 0.88101 1.48561 0.91780 0.92539 1.27090 1.03476 0.98354 0.98454 1.70909 1.11934 1.37535 1.37216 0.82930 0.72975 0.76918 0.73714 1.20171 1.20566 1.21617 1.21576 0.96997 0.96675 0.83800 1.22065 0.94802 0.98313 0.94597 0.90628 1.21629 1.03736 0.97350 0.90950 1.21249 1.00661 0.93624 0.84604 1.45898 1.69237 1.12842 1.08485 1.20976 0.75415 0.88327 0.84972 1.90724 1.51622 1.18295 1.85619 1.21267 1.02159 0.95492 0.92089 0.85595 1.21350 1.02069 0.97594 0.92267 1.19914 0.99807 0.89552 0.97463 1.20836 1.06393 0.98969 0.89124 1.69955 1.16418 1.03937 1.34915 1.25759 1.03110 1.01085 0.79976 1.42920 1.44621 1.17765 1.09948 0.72172 1.20879 1.05547 0.90291 0.97749 1.19986 0.98670 0.95845 0.92089 0.93383 0.89353 0.92779 0.96711 0.98476 0.93796 0.98122 0.95160 0.90313 0.87902 0.92188 0.93720 0.74479 0.90607 0.92583 0.90728 0.89673 0.74066 0.90465 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.29 71.98 0.67 -2.57 16 2 C -0.09 -2.85 3.09 -9.40 -0.03 -2.88 16 3 H 0.08 2.54 8.05 -2.39 -0.02 2.52 16 4 C 0.15 7.15 4.81 86.86 0.42 7.57 16 5 N -0.63 -32.89 3.33 -691.94 -2.30 -35.19 16 6 C -0.36 -20.93 9.97 84.03 0.84 -20.09 16 7 H 0.06 3.34 8.02 -2.91 -0.02 3.31 16 8 C -0.08 -4.56 4.95 84.86 0.42 -4.14 16 9 N -0.93 -58.79 12.87 21.65 0.28 -58.51 16 10 Si 1.11 52.13 30.03 68.60 2.06 54.19 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 14 C 0.13 5.58 6.24 86.73 0.54 6.12 16 15 C -0.08 -2.34 2.39 -9.60 -0.02 -2.36 16 16 H 0.08 2.27 8.01 -2.38 -0.02 2.25 16 17 C -0.10 -1.92 4.73 30.60 0.14 -1.77 16 18 C 0.12 2.63 5.56 86.38 0.48 3.11 16 19 N -0.71 -11.04 5.46 -463.07 -2.53 -13.57 16 20 C 0.52 10.17 7.13 87.66 0.63 10.80 16 21 O -0.58 -17.62 15.81 -3.03 -0.05 -17.66 16 22 C -0.09 -1.17 2.50 -11.37 -0.03 -1.20 16 23 H 0.13 1.14 8.12 -2.39 -0.02 1.12 16 24 C -0.09 -1.58 4.64 30.75 0.14 -1.44 16 25 C -0.03 -0.47 6.30 30.02 0.19 -0.28 16 26 C -0.02 -0.44 6.98 41.60 0.29 -0.15 16 27 N -0.53 -10.53 11.25 -187.90 -2.11 -12.64 16 28 C 0.18 2.11 13.05 180.11 2.35 4.46 16 29 N -0.55 -4.80 6.14 -186.46 -1.15 -5.94 16 30 H 0.44 0.71 8.96 -92.70 -0.83 -0.12 16 31 C -0.03 -0.37 7.08 41.14 0.29 -0.07 16 32 C -0.03 -0.28 5.43 29.97 0.16 -0.12 16 33 H 0.05 1.26 8.11 -2.38 -0.02 1.24 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.01 0.77 7.82 -2.39 -0.02 0.75 16 37 H 0.00 -0.13 6.92 -2.39 -0.02 -0.15 16 38 H 0.25 16.24 6.45 -92.71 -0.60 15.64 16 39 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.03 1.22 7.69 -2.39 -0.02 1.20 16 41 H 0.08 1.47 7.94 -2.39 -0.02 1.45 16 42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.04 1.22 7.68 -2.39 -0.02 1.20 16 45 H 0.42 3.28 8.15 -92.71 -0.76 2.52 16 46 H 0.08 1.39 7.76 -2.39 -0.02 1.37 16 47 H 0.06 1.11 8.11 -2.39 -0.02 1.09 16 48 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 50 H 0.24 0.65 8.06 -2.91 -0.02 0.62 16 51 H 0.08 0.96 8.11 -2.39 -0.02 0.95 16 52 H 0.11 0.48 7.90 -2.39 -0.02 0.46 16 Total: -1.00 -86.05 409.22 1.19 -84.85 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -0.49 Total: 9.48 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 7.48 Total: -5.01 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -7.81 Total: -125.86 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.05 Total: -17.66 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 2.06 Total: 54.19 kcal Total: -86.05 1.19 -84.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103620759.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.199 kcal (2) G-P(sol) polarization free energy of solvation -86.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds