Wall clock time and date at job start Wed Apr 1 2020 04:56:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08994 * 110.91759 * 2 1
4 4 C 1.54911 * 111.00049 * 236.10387 * 2 1 3
5 5 N 1.47428 * 104.83117 * 204.91401 * 4 2 1
6 6 C 1.36936 * 125.65064 * 204.08750 * 5 4 2
7 7 H 1.08000 * 119.99664 * 168.09853 * 6 5 4
8 8 C 1.38814 * 119.99940 * 348.10380 * 6 5 4
9 9 N 1.31611 * 119.99770 * 325.97326 * 8 6 5
10 10 Si 1.86803 * 119.99856 * 145.97398 * 8 6 5
11 11 H 1.48498 * 109.47176 * 59.99787 * 10 8 6
12 12 H 1.48504 * 109.47098 * 299.99679 * 10 8 6
13 13 H 1.48503 * 109.46709 * 179.97438 * 10 8 6
14 14 C 1.47029 * 108.69950 * 24.35676 * 5 4 2
15 15 C 1.54326 * 107.26545 * 358.58471 * 14 5 4
16 16 H 1.09005 * 110.67113 * 96.52339 * 15 14 5
17 17 C 1.53004 * 110.84969 * 219.67235 * 15 14 5
18 18 C 1.52998 * 109.46973 * 288.69629 * 17 15 14
19 19 N 1.46502 * 109.46866 * 179.97438 * 18 17 15
20 20 C 1.34776 * 120.00018 * 179.97438 * 19 18 17
21 21 O 1.21279 * 120.00073 * 359.97438 * 20 19 18
22 22 C 1.50703 * 119.99942 * 180.02562 * 20 19 18
23 23 H 1.09004 * 109.47569 * 60.00114 * 22 20 19
24 24 C 1.53119 * 109.47354 * 180.02562 * 22 20 19
25 25 C 1.53360 * 109.52711 * 190.00724 * 24 22 20
26 26 C 1.50863 * 108.41018 * 310.02059 * 25 24 22
27 27 N 1.33581 * 128.02988 * 196.77237 * 26 25 24
28 28 C 1.30751 * 109.14512 * 179.84327 * 27 26 25
29 29 N 1.35305 * 108.76839 * 0.02562 * 28 27 26
30 30 H 0.97006 * 126.49651 * 180.02562 * 29 28 27
31 31 C 1.35027 * 123.99246 * 16.66111 * 26 25 24
32 32 C 1.50653 * 124.45259 * 0.17128 * 31 26 25
33 33 H 1.09005 * 109.46919 * 182.44745 * 1 2 3
34 34 H 1.09000 * 109.46841 * 302.44616 * 1 2 3
35 35 H 1.08995 * 109.47319 * 62.44579 * 1 2 3
36 36 H 1.09001 * 110.37176 * 86.07693 * 4 2 1
37 37 H 1.09004 * 110.36966 * 323.75279 * 4 2 1
38 38 H 0.97001 * 120.00692 * 354.24878 * 9 8 6
39 39 H 1.09001 * 109.88100 * 118.13374 * 14 5 4
40 40 H 1.09001 * 109.88095 * 239.29376 * 14 5 4
41 41 H 1.08999 * 109.46578 * 48.69526 * 17 15 14
42 42 H 1.09000 * 109.47220 * 168.69226 * 17 15 14
43 43 H 1.08999 * 109.47385 * 299.99404 * 18 17 15
44 44 H 1.08993 * 109.47304 * 60.00082 * 18 17 15
45 45 H 0.97004 * 120.00259 * 359.97438 * 19 18 17
46 46 H 1.09002 * 109.46233 * 310.02351 * 24 22 20
47 47 H 1.08995 * 109.46553 * 69.98735 * 24 22 20
48 48 H 1.08994 * 109.66674 * 190.29581 * 25 24 22
49 49 H 1.09009 * 109.71610 * 69.77361 * 25 24 22
50 50 H 1.07997 * 125.61385 * 179.97438 * 28 27 26
51 51 H 1.09000 * 109.68290 * 256.68284 * 32 31 26
52 52 H 1.08990 * 109.71335 * 136.14088 * 32 31 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9192 1.0181 0.0000
4 6 2.0852 -0.8065 -1.2004
5 7 3.4271 -1.2430 -0.7736
6 6 4.4640 -1.5667 -1.6074
7 1 5.4600 -1.6890 -1.2082
8 6 4.2348 -1.7375 -2.9658
9 7 3.0950 -2.2474 -3.3819
10 14 5.5441 -1.2435 -4.2033
11 1 6.7842 -2.0196 -3.9483
12 1 5.8313 0.2072 -4.0675
13 1 5.0577 -1.5258 -5.5777
14 6 3.4658 -1.2795 0.6958
15 6 2.0862 -0.8080 1.2021
16 1 1.4451 -1.6615 1.4227
17 6 2.2351 0.0874 2.4338
18 6 2.6653 -0.7610 3.6321
19 7 2.8084 0.0965 4.8112
20 6 3.1815 -0.4372 5.9913
21 8 3.3983 -1.6273 6.0771
22 6 3.3281 0.4449 7.2044
23 1 2.3739 0.9246 7.4224
24 6 3.7588 -0.4041 8.4037
25 6 3.6673 0.4344 9.6846
26 6 4.3813 1.7424 9.4498
27 7 4.8077 2.6222 10.3600
28 6 5.3814 3.6264 9.7501
29 7 5.3342 3.4094 8.4153
30 1 5.6849 3.9918 7.7234
31 6 4.7013 2.2191 8.2276
32 6 4.3893 1.5183 6.9310
33 1 -0.3633 -1.0268 0.0439
34 1 -0.3633 0.5514 0.8673
35 1 -0.3634 0.4754 -0.9110
36 1 2.1559 -0.1719 -2.0838
37 1 1.4518 -1.6703 -1.4026
38 1 2.4495 -2.5809 -2.7392
39 1 3.6602 -2.2965 1.0364
40 1 4.2424 -0.6086 1.0629
41 1 2.9889 0.8503 2.2393
42 1 1.2808 0.5669 2.6518
43 1 1.9114 -1.5239 3.8265
44 1 3.6195 -1.2404 3.4140
45 1 2.6346 1.0484 4.7428
46 1 3.1032 -1.2707 8.4893
47 1 4.7862 -0.7389 8.2615
48 1 4.1416 -0.1001 10.5075
49 1 2.6213 0.6252 9.9252
50 1 5.8199 4.4875 10.2322
51 1 5.2927 1.0501 6.5401
52 1 4.0060 2.2375 6.2074
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001103620759.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:56:34
Heat of formation + Delta-G solvation = -8.652042 kcal
Electronic energy + Delta-G solvation = -30010.613191 eV
Core-core repulsion = 26009.109892 eV
Total energy + Delta-G solvation = -4001.503299 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-43.22053 -41.02096 -39.94744 -37.32058 -36.50435 -35.21613 -34.13648 -32.61328
-32.55664 -30.86530 -30.22417 -28.27868 -27.56336 -25.75071 -24.92091 -23.94051
-23.19374 -22.49942 -21.62135 -21.40023 -20.73540 -19.87055 -19.50720 -18.82293
-17.99926 -17.07406 -16.88287 -16.57551 -16.19924 -16.10881 -15.60218 -15.50362
-15.29536 -15.14955 -14.87004 -14.76922 -14.62436 -14.35184 -14.22195 -13.97918
-13.70277 -13.57008 -13.30644 -12.93294 -12.90438 -12.66326 -12.58208 -12.48401
-12.39990 -12.26576 -12.03357 -11.92565 -11.92279 -11.73957 -11.54674 -11.45789
-11.25559 -10.92065 -10.80448 -10.74307 -10.46504 -10.09375 -9.11394 -9.04295
-8.41768 -5.29523 1.08213 1.54804 1.58049 1.62290 1.82290 2.10292
2.15837 2.30281 2.62514 3.10296 3.43731 3.54270 3.59890 3.65520
3.77338 3.79842 3.84353 3.91984 4.11275 4.18622 4.23731 4.30258
4.32451 4.38734 4.45305 4.52869 4.55187 4.60490 4.62364 4.68424
4.75097 4.76436 4.85611 4.90663 4.92534 5.01257 5.06158 5.08691
5.12130 5.16222 5.19072 5.27856 5.32899 5.33216 5.39389 5.45527
5.56282 5.65631 5.79558 6.27579 6.56650 6.59284 6.87808 7.15308
7.26444 7.70354 8.29595 8.92351
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.016494 B = 0.001863 C = 0.001793
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1697.138848 B =15022.535532 C =15616.575848
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.089 4.089
3 H 0.084 0.916
4 C 0.152 3.848
5 N -0.628 5.628
6 C -0.356 4.356
7 H 0.057 0.943
8 C -0.077 4.077
9 N -0.934 5.934
10 Si 1.111 2.889
11 H -0.276 1.276
12 H -0.279 1.279
13 H -0.290 1.290
14 C 0.134 3.866
15 C -0.078 4.078
16 H 0.075 0.925
17 C -0.099 4.099
18 C 0.123 3.877
19 N -0.712 5.712
20 C 0.516 3.484
21 O -0.583 6.583
22 C -0.088 4.088
23 H 0.126 0.874
24 C -0.094 4.094
25 C -0.029 4.029
26 C -0.024 4.024
27 N -0.533 5.533
28 C 0.184 3.816
29 N -0.549 5.549
30 H 0.437 0.563
31 C -0.027 4.027
32 C -0.027 4.027
33 H 0.047 0.953
34 H 0.088 0.912
35 H 0.053 0.947
36 H 0.014 0.986
37 H -0.003 1.003
38 H 0.252 0.748
39 H 0.001 0.999
40 H 0.030 0.970
41 H 0.078 0.922
42 H 0.103 0.897
43 H 0.060 0.940
44 H 0.044 0.956
45 H 0.418 0.582
46 H 0.075 0.925
47 H 0.055 0.945
48 H 0.074 0.926
49 H 0.085 0.915
50 H 0.243 0.757
51 H 0.077 0.923
52 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.126 16.939 25.299 30.520
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.108 4.108
3 H 0.102 0.898
4 C 0.026 3.974
5 N -0.355 5.355
6 C -0.484 4.484
7 H 0.075 0.925
8 C -0.274 4.274
9 N -0.576 5.576
10 Si 0.935 3.065
11 H -0.202 1.202
12 H -0.206 1.206
13 H -0.216 1.216
14 C 0.010 3.990
15 C -0.098 4.098
16 H 0.094 0.906
17 C -0.137 4.137
18 C -0.001 4.001
19 N -0.365 5.365
20 C 0.303 3.697
21 O -0.463 6.463
22 C -0.110 4.110
23 H 0.144 0.856
24 C -0.133 4.133
25 C -0.067 4.067
26 C -0.153 4.153
27 N -0.252 5.252
28 C -0.099 4.099
29 N -0.153 5.153
30 H 0.278 0.722
31 C -0.145 4.145
32 C -0.066 4.066
33 H 0.066 0.934
34 H 0.106 0.894
35 H 0.072 0.928
36 H 0.033 0.967
37 H 0.015 0.985
38 H 0.062 0.938
39 H 0.019 0.981
40 H 0.048 0.952
41 H 0.097 0.903
42 H 0.121 0.879
43 H 0.078 0.922
44 H 0.063 0.937
45 H 0.255 0.745
46 H 0.094 0.906
47 H 0.074 0.926
48 H 0.093 0.907
49 H 0.103 0.897
50 H 0.259 0.741
51 H 0.095 0.905
52 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -1.633 16.102 24.562 29.415
hybrid contribution 0.229 -0.184 0.140 0.325
sum -1.404 15.919 24.702 29.420
Atomic orbital electron populations
1.21653 0.92444 1.01926 1.02769 1.22337 0.96776 0.98517 0.93207
0.89783 1.21519 0.85554 0.94416 0.95896 1.44936 1.10729 1.78091
1.01753 1.19940 0.88101 1.48561 0.91780 0.92539 1.27090 1.03476
0.98354 0.98454 1.70909 1.11934 1.37535 1.37216 0.82930 0.72975
0.76918 0.73714 1.20171 1.20566 1.21617 1.21576 0.96997 0.96675
0.83800 1.22065 0.94802 0.98313 0.94597 0.90628 1.21629 1.03736
0.97350 0.90950 1.21249 1.00661 0.93624 0.84604 1.45898 1.69237
1.12842 1.08485 1.20976 0.75415 0.88327 0.84972 1.90724 1.51622
1.18295 1.85619 1.21267 1.02159 0.95492 0.92089 0.85595 1.21350
1.02069 0.97594 0.92267 1.19914 0.99807 0.89552 0.97463 1.20836
1.06393 0.98969 0.89124 1.69955 1.16418 1.03937 1.34915 1.25759
1.03110 1.01085 0.79976 1.42920 1.44621 1.17765 1.09948 0.72172
1.20879 1.05547 0.90291 0.97749 1.19986 0.98670 0.95845 0.92089
0.93383 0.89353 0.92779 0.96711 0.98476 0.93796 0.98122 0.95160
0.90313 0.87902 0.92188 0.93720 0.74479 0.90607 0.92583 0.90728
0.89673 0.74066 0.90465 0.87167
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.24 9.29 71.98 0.67 -2.57 16
2 C -0.09 -2.85 3.09 -9.40 -0.03 -2.88 16
3 H 0.08 2.54 8.05 -2.39 -0.02 2.52 16
4 C 0.15 7.15 4.81 86.86 0.42 7.57 16
5 N -0.63 -32.89 3.33 -691.94 -2.30 -35.19 16
6 C -0.36 -20.93 9.97 84.03 0.84 -20.09 16
7 H 0.06 3.34 8.02 -2.91 -0.02 3.31 16
8 C -0.08 -4.56 4.95 84.86 0.42 -4.14 16
9 N -0.93 -58.79 12.87 21.65 0.28 -58.51 16
10 Si 1.11 52.13 30.03 68.60 2.06 54.19 16
11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16
12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16
13 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16
14 C 0.13 5.58 6.24 86.73 0.54 6.12 16
15 C -0.08 -2.34 2.39 -9.60 -0.02 -2.36 16
16 H 0.08 2.27 8.01 -2.38 -0.02 2.25 16
17 C -0.10 -1.92 4.73 30.60 0.14 -1.77 16
18 C 0.12 2.63 5.56 86.38 0.48 3.11 16
19 N -0.71 -11.04 5.46 -463.07 -2.53 -13.57 16
20 C 0.52 10.17 7.13 87.66 0.63 10.80 16
21 O -0.58 -17.62 15.81 -3.03 -0.05 -17.66 16
22 C -0.09 -1.17 2.50 -11.37 -0.03 -1.20 16
23 H 0.13 1.14 8.12 -2.39 -0.02 1.12 16
24 C -0.09 -1.58 4.64 30.75 0.14 -1.44 16
25 C -0.03 -0.47 6.30 30.02 0.19 -0.28 16
26 C -0.02 -0.44 6.98 41.60 0.29 -0.15 16
27 N -0.53 -10.53 11.25 -187.90 -2.11 -12.64 16
28 C 0.18 2.11 13.05 180.11 2.35 4.46 16
29 N -0.55 -4.80 6.14 -186.46 -1.15 -5.94 16
30 H 0.44 0.71 8.96 -92.70 -0.83 -0.12 16
31 C -0.03 -0.37 7.08 41.14 0.29 -0.07 16
32 C -0.03 -0.28 5.43 29.97 0.16 -0.12 16
33 H 0.05 1.26 8.11 -2.38 -0.02 1.24 16
34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16
35 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16
36 H 0.01 0.77 7.82 -2.39 -0.02 0.75 16
37 H 0.00 -0.13 6.92 -2.39 -0.02 -0.15 16
38 H 0.25 16.24 6.45 -92.71 -0.60 15.64 16
39 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16
40 H 0.03 1.22 7.69 -2.39 -0.02 1.20 16
41 H 0.08 1.47 7.94 -2.39 -0.02 1.45 16
42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16
43 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
44 H 0.04 1.22 7.68 -2.39 -0.02 1.20 16
45 H 0.42 3.28 8.15 -92.71 -0.76 2.52 16
46 H 0.08 1.39 7.76 -2.39 -0.02 1.37 16
47 H 0.06 1.11 8.11 -2.39 -0.02 1.09 16
48 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
49 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16
50 H 0.24 0.65 8.06 -2.91 -0.02 0.62 16
51 H 0.08 0.96 8.11 -2.39 -0.02 0.95 16
52 H 0.11 0.48 7.90 -2.39 -0.02 0.46 16
Total: -1.00 -86.05 409.22 1.19 -84.85
By element:
Atomic # 1 Polarization: 9.97 SS G_CDS: -0.49 Total: 9.48 kcal
Atomic # 6 Polarization: -12.49 SS G_CDS: 7.48 Total: -5.01 kcal
Atomic # 7 Polarization: -118.05 SS G_CDS: -7.81 Total: -125.86 kcal
Atomic # 8 Polarization: -17.62 SS G_CDS: -0.05 Total: -17.66 kcal
Atomic # 14 Polarization: 52.13 SS G_CDS: 2.06 Total: 54.19 kcal
Total: -86.05 1.19 -84.85 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001103620759.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.199 kcal
(2) G-P(sol) polarization free energy of solvation -86.045 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.846 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.851 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.652 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds