Wall clock time and date at job start Wed Apr 1 2020 04:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 110.88675 * 2 1 4 4 C 1.54912 * 111.00871 * 236.11712 * 2 1 3 5 5 N 1.47421 * 104.83395 * 204.87854 * 4 2 1 6 6 C 1.36935 * 125.64558 * 204.09051 * 5 4 2 7 7 H 1.08004 * 119.99863 * 179.74617 * 6 5 4 8 8 C 1.38818 * 120.00045 * 0.02596 * 6 5 4 9 9 N 1.31614 * 120.00084 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99865 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47732 * 59.99310 * 10 8 6 12 12 H 1.48495 * 109.47379 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47279 * 299.99549 * 10 8 6 14 14 C 1.47019 * 108.70364 * 24.35426 * 5 4 2 15 15 C 1.54330 * 107.26790 * 358.58748 * 14 5 4 16 16 H 1.08991 * 110.51869 * 96.44791 * 15 14 5 17 17 C 1.52996 * 111.00427 * 219.60369 * 15 14 5 18 18 C 1.52999 * 109.47072 * 288.78246 * 17 15 14 19 19 N 1.46499 * 109.47612 * 180.02562 * 18 17 15 20 20 C 1.34771 * 120.00277 * 179.97438 * 19 18 17 21 21 O 1.21623 * 120.00121 * 354.85895 * 20 19 18 22 22 C 1.47165 * 119.99859 * 174.85639 * 20 19 18 23 23 C 1.38089 * 126.94309 * 99.48353 * 22 20 19 24 24 C 1.39533 * 105.71112 * 180.02562 * 23 22 20 25 25 N 1.31062 * 107.59690 * 359.97438 * 24 23 22 26 26 N 1.28449 * 110.96866 * 359.73688 * 25 24 23 27 27 C 1.46497 * 125.19991 * 180.31120 * 26 25 24 28 28 C 1.51275 * 109.37731 * 179.97438 * 24 23 22 29 29 C 1.54382 * 105.27037 * 17.14206 * 28 24 23 30 30 C 1.50859 * 144.41088 * 0.06353 * 23 22 20 31 31 H 1.09003 * 109.47014 * 182.42716 * 1 2 3 32 32 H 1.08997 * 109.47457 * 302.42776 * 1 2 3 33 33 H 1.09004 * 109.47352 * 62.43252 * 1 2 3 34 34 H 1.08997 * 110.36680 * 86.03439 * 4 2 1 35 35 H 1.09002 * 110.36165 * 323.71969 * 4 2 1 36 36 H 0.96995 * 119.99820 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.88247 * 118.13204 * 14 5 4 38 38 H 1.08996 * 109.88207 * 239.29606 * 14 5 4 39 39 H 1.09009 * 109.47186 * 48.77654 * 17 15 14 40 40 H 1.08996 * 109.47515 * 168.77932 * 17 15 14 41 41 H 1.09009 * 109.46632 * 299.99747 * 18 17 15 42 42 H 1.08996 * 109.47206 * 59.99497 * 18 17 15 43 43 H 0.97001 * 119.99652 * 359.97438 * 19 18 17 44 44 H 1.09008 * 109.47023 * 275.04064 * 27 26 25 45 45 H 1.09004 * 109.47606 * 35.03994 * 27 26 25 46 46 H 1.09000 * 109.47707 * 155.04078 * 27 26 25 47 47 H 1.08994 * 110.28371 * 136.09115 * 28 24 23 48 48 H 1.08991 * 110.28223 * 258.19152 * 28 24 23 49 49 H 1.08999 * 110.77949 * 91.96732 * 29 28 24 50 50 H 1.09005 * 110.77442 * 215.21211 * 29 28 24 51 51 H 1.09004 * 110.29927 * 281.82281 * 30 23 22 52 52 H 1.08995 * 110.30239 * 43.96867 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2006 5 7 3.4275 -1.2420 -0.7740 6 6 4.4642 -1.5650 -1.6083 7 1 5.4144 -1.8704 -1.1956 8 6 4.2957 -1.4942 -2.9844 9 7 3.1394 -1.1172 -3.4873 10 14 5.7098 -1.9355 -4.1224 11 1 6.1175 -3.3432 -3.8827 12 1 5.2763 -1.7798 -5.5341 13 1 6.8599 -1.0349 -3.8551 14 6 3.4666 -1.2784 0.6952 15 6 2.0870 -0.8078 1.2020 16 1 1.4481 -1.6633 1.4208 17 6 2.2315 0.0867 2.4348 18 6 2.6627 -0.7617 3.6327 19 7 2.8006 0.0946 4.8134 20 6 3.1735 -0.4393 5.9933 21 8 3.3049 -1.6436 6.1015 22 6 3.4219 0.4349 7.1508 23 6 2.5570 0.6945 8.1955 24 6 3.2364 1.5744 9.0388 25 7 4.4135 1.8015 8.5091 26 7 4.5574 1.1493 7.4119 27 6 5.7544 1.1705 6.5676 28 6 2.3566 1.9169 10.2207 29 6 1.2600 0.8304 10.2398 30 6 1.1901 0.3959 8.7596 31 1 -0.3633 -1.0268 0.0435 32 1 -0.3634 0.5510 0.8674 33 1 -0.3634 0.4756 -0.9110 34 1 2.1553 -0.1715 -2.0839 35 1 1.4522 -1.6703 -1.4025 36 1 3.0215 -1.0682 -4.4488 37 1 3.6616 -2.2953 1.0357 38 1 4.2430 -0.6071 1.0621 39 1 2.9835 0.8521 2.2422 40 1 1.2756 0.5631 2.6522 41 1 1.9108 -1.5271 3.8253 42 1 3.6186 -1.2381 3.4153 43 1 2.6234 1.0459 4.7459 44 1 5.7088 2.0264 5.8940 45 1 6.6413 1.2499 7.1964 46 1 5.8040 0.2512 5.9841 47 1 2.9352 1.8861 11.1439 48 1 1.9101 2.9021 10.0864 49 1 1.5546 -0.0052 10.8747 50 1 0.3082 1.2474 10.5688 51 1 0.4294 0.9715 8.2322 52 1 0.9760 -0.6704 8.6879 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103637215.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:33 Heat of formation + Delta-G solvation = 41.718617 kcal Electronic energy + Delta-G solvation = -30210.948153 eV Core-core repulsion = 26211.629090 eV Total energy + Delta-G solvation = -3999.319063 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.74446 -40.71391 -39.69685 -37.88696 -36.58340 -35.05161 -33.31711 -32.67933 -32.53037 -31.60938 -28.79008 -28.25566 -27.50529 -27.27333 -25.78713 -24.20969 -23.25900 -22.35652 -21.46933 -21.35451 -20.89676 -20.33415 -18.87299 -18.57866 -17.65110 -17.17375 -17.03768 -16.79298 -16.49096 -15.96585 -15.88236 -15.61434 -15.29507 -15.08387 -14.69158 -14.53424 -14.21013 -13.85981 -13.78199 -13.72340 -13.63522 -13.54411 -13.47951 -13.36010 -12.89148 -12.77930 -12.73441 -12.72707 -12.42801 -12.22717 -12.04103 -11.99053 -11.81261 -11.79734 -11.57284 -11.42665 -11.36533 -11.25895 -10.96367 -10.73284 -10.29868 -10.11125 -9.58130 -8.87118 -7.77185 -5.21600 0.52840 0.96399 1.44487 1.47604 1.53421 1.54037 1.58425 2.04438 2.48781 2.89192 3.31055 3.45285 3.68322 3.74071 3.88316 3.90024 3.91218 4.06294 4.18598 4.20620 4.23265 4.24870 4.28736 4.32233 4.47191 4.51082 4.63374 4.68152 4.71027 4.78798 4.83463 4.85493 4.88094 4.98657 5.01423 5.02601 5.07964 5.10789 5.17007 5.22113 5.23199 5.30638 5.39719 5.41155 5.45918 5.48891 5.55210 5.77118 5.77943 5.86294 6.26591 6.32883 6.90252 6.99954 7.11736 7.80127 8.43898 9.23800 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018562 B = 0.002001 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.089326 B =13986.623121 C =14916.827668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.072 0.928 4 C 0.159 3.841 5 N -0.630 5.630 6 C -0.240 4.240 7 H 0.077 0.923 8 C -0.069 4.069 9 N -0.948 5.948 10 Si 0.979 3.021 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.276 1.276 14 C 0.133 3.867 15 C -0.078 4.078 16 H 0.078 0.922 17 C -0.100 4.100 18 C 0.123 3.877 19 N -0.696 5.696 20 C 0.598 3.402 21 O -0.563 6.563 22 C -0.033 4.033 23 C -0.196 4.196 24 C -0.007 4.007 25 N -0.288 5.288 26 N -0.276 5.276 27 C 0.081 3.919 28 C -0.026 4.026 29 C -0.106 4.106 30 C -0.048 4.048 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.068 0.932 35 H -0.018 1.018 36 H 0.247 0.753 37 H 0.012 0.988 38 H 0.028 0.972 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.417 0.583 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.102 0.898 49 H 0.075 0.925 50 H 0.113 0.887 51 H 0.095 0.905 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.564 10.031 26.882 29.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.090 0.910 4 C 0.034 3.966 5 N -0.356 5.356 6 C -0.369 4.369 7 H 0.095 0.905 8 C -0.261 4.261 9 N -0.597 5.597 10 Si 0.807 3.193 11 H -0.207 1.207 12 H -0.218 1.218 13 H -0.202 1.202 14 C 0.008 3.992 15 C -0.098 4.098 16 H 0.096 0.904 17 C -0.138 4.138 18 C 0.000 4.000 19 N -0.348 5.348 20 C 0.381 3.619 21 O -0.441 6.441 22 C -0.160 4.160 23 C -0.206 4.206 24 C -0.166 4.166 25 N -0.119 5.119 26 N -0.064 5.064 27 C -0.058 4.058 28 C -0.064 4.064 29 C -0.144 4.144 30 C -0.086 4.086 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.086 0.914 35 H -0.001 1.001 36 H 0.056 0.944 37 H 0.030 0.970 38 H 0.046 0.954 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.254 0.746 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.120 0.880 49 H 0.094 0.906 50 H 0.131 0.869 51 H 0.113 0.887 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.226 9.735 26.752 28.780 hybrid contribution 0.472 -0.817 -1.564 1.827 sum -3.754 8.918 25.188 26.982 Atomic orbital electron populations 1.21597 0.93038 1.01669 1.02175 1.22465 0.96476 0.98443 0.94607 0.90989 1.21787 0.83599 0.94813 0.96404 1.44847 1.10496 1.78954 1.01258 1.19407 0.91866 1.37530 0.88132 0.90502 1.25634 0.99784 1.02582 0.98118 1.70060 1.24076 1.54821 1.10785 0.85144 0.78504 0.78084 0.77557 1.20710 1.21829 1.20156 1.21583 0.96654 0.97065 0.83869 1.22043 0.95323 0.98218 0.94174 0.90405 1.21634 1.03490 0.97499 0.91157 1.21449 1.01698 0.93470 0.83391 1.45889 1.67788 1.13171 1.07926 1.17101 0.76786 0.86192 0.81820 1.90845 1.53173 1.16043 1.83991 1.20510 0.91408 1.04192 0.99925 1.21686 1.00462 1.03459 0.95035 1.23500 0.91193 1.00590 1.01301 1.72629 1.21262 1.18780 0.99206 1.46006 1.12718 1.31160 1.16533 1.22451 0.83814 1.05402 0.94147 1.20619 0.93015 1.00759 0.92054 1.22415 0.99635 0.98035 0.94324 1.20551 0.89926 1.01865 0.96292 0.93332 0.90086 0.93158 0.91383 1.00050 0.94371 0.97043 0.95374 0.90541 0.88420 0.91315 0.92304 0.74628 0.87370 0.87003 0.89017 0.89392 0.87968 0.90625 0.86859 0.88708 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.30 71.98 0.67 -2.81 16 2 C -0.10 -3.45 3.09 -9.40 -0.03 -3.48 16 3 H 0.07 2.44 8.05 -2.39 -0.02 2.42 16 4 C 0.16 7.79 5.36 86.86 0.47 8.25 16 5 N -0.63 -32.77 3.39 -691.99 -2.35 -35.12 16 6 C -0.24 -13.70 10.27 84.04 0.86 -12.84 16 7 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 8 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 9 N -0.95 -56.98 10.09 21.65 0.22 -56.76 16 10 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 13 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 14 C 0.13 5.39 6.25 86.73 0.54 5.93 16 15 C -0.08 -2.38 2.38 -9.60 -0.02 -2.41 16 16 H 0.08 2.34 8.01 -2.39 -0.02 2.32 16 17 C -0.10 -2.10 4.74 30.59 0.14 -1.95 16 18 C 0.12 2.72 5.57 86.38 0.48 3.20 16 19 N -0.70 -13.52 5.55 -466.64 -2.59 -16.11 16 20 C 0.60 15.09 7.01 86.59 0.61 15.70 16 21 O -0.56 -19.02 17.12 -4.10 -0.07 -19.09 16 22 C -0.03 -0.77 6.71 40.70 0.27 -0.50 16 23 C -0.20 -4.18 7.02 -19.54 -0.14 -4.32 16 24 C -0.01 -0.15 8.13 43.17 0.35 0.20 16 25 N -0.29 -6.75 11.91 -47.03 -0.56 -7.31 16 26 N -0.28 -5.99 3.75 -356.22 -1.34 -7.33 16 27 C 0.08 1.17 11.22 127.77 1.43 2.61 16 28 C -0.03 -0.30 6.76 30.50 0.21 -0.09 16 29 C -0.11 -0.96 7.07 31.54 0.22 -0.74 16 30 C -0.05 -0.70 6.76 30.38 0.21 -0.50 16 31 H 0.05 1.36 8.11 -2.39 -0.02 1.34 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.07 3.84 5.87 -2.39 -0.01 3.82 16 35 H -0.02 -0.99 8.04 -2.39 -0.02 -1.01 16 36 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.03 1.10 7.70 -2.39 -0.02 1.08 16 39 H 0.08 1.58 7.95 -2.38 -0.02 1.56 16 40 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.06 1.52 7.69 -2.39 -0.02 1.50 16 43 H 0.42 5.88 8.46 -92.71 -0.78 5.09 16 44 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.09 1.38 7.66 -2.39 -0.02 1.36 16 47 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 51 H 0.09 1.07 8.14 -2.38 -0.02 1.06 16 52 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -78.76 415.31 2.21 -76.56 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.13 Total: 14.18 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 6.74 Total: 2.79 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -6.62 Total: -122.62 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.07 Total: -19.09 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -78.76 2.21 -76.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103637215.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.274 kcal (2) G-P(sol) polarization free energy of solvation -78.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds