Wall clock time and date at job start Wed Apr 1 2020 04:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47466 * 2 1 4 4 C 1.50701 * 109.46851 * 120.00141 * 2 1 3 5 5 N 1.32169 * 120.53488 * 309.87255 * 4 2 1 6 6 C 1.31849 * 120.96555 * 180.29249 * 5 4 2 7 7 N 1.31886 * 122.10086 * 359.74570 * 6 5 4 8 8 C 1.32136 * 120.96082 * 359.97438 * 7 6 5 9 9 C 1.39921 * 120.54145 * 129.63458 * 4 2 1 10 10 C 1.47832 * 120.93861 * 359.97438 * 9 4 2 11 11 O 1.21557 * 120.00419 * 36.89783 * 10 9 4 12 12 N 1.34779 * 120.00369 * 216.90490 * 10 9 4 13 13 C 1.46497 * 120.00524 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47195 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47084 * 180.02562 * 14 13 12 16 16 H 1.08993 * 110.64423 * 51.86125 * 15 14 13 17 17 C 1.54342 * 110.84835 * 288.69205 * 15 14 13 18 18 N 1.47020 * 107.26453 * 219.67391 * 17 15 14 19 19 C 1.36940 * 125.64685 * 178.85477 * 18 17 15 20 20 H 1.07995 * 120.00005 * 359.43640 * 19 18 17 21 21 C 1.38804 * 119.99799 * 179.71502 * 19 18 17 22 22 N 1.31626 * 120.00538 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99807 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47014 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47117 * 120.00309 * 23 21 19 26 26 H 1.48508 * 109.47075 * 239.99964 * 23 21 19 27 27 C 1.47421 * 108.70536 * 358.58656 * 18 17 15 28 28 C 1.54912 * 104.83342 * 24.35611 * 27 18 17 29 29 H 1.08998 * 111.00360 * 81.06350 * 28 27 18 30 30 C 1.52999 * 111.00838 * 204.87952 * 28 27 18 31 31 H 1.09002 * 109.47153 * 60.00304 * 1 2 3 32 32 H 1.09005 * 109.47441 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47713 * 300.00246 * 1 2 3 34 34 H 1.08999 * 109.47097 * 239.99316 * 2 1 3 35 35 H 1.08996 * 109.47467 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.46686 * 299.99982 * 3 2 1 37 37 H 1.09004 * 109.47059 * 59.99640 * 3 2 1 38 38 H 1.07999 * 118.95265 * 179.72582 * 6 5 4 39 39 H 1.08007 * 120.53678 * 179.97438 * 8 7 6 40 40 H 0.97006 * 119.99479 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.46744 * 60.00137 * 13 12 10 42 42 H 1.08997 * 109.46767 * 300.00208 * 13 12 10 43 43 H 1.09001 * 109.47436 * 59.99827 * 14 13 12 44 44 H 1.09005 * 109.47422 * 299.99956 * 14 13 12 45 45 H 1.09001 * 109.98476 * 100.19914 * 17 15 14 46 46 H 1.08999 * 109.77741 * 339.03150 * 17 15 14 47 47 H 0.96996 * 120.00246 * 180.02562 * 22 21 19 48 48 H 1.09003 * 110.37213 * 143.19655 * 27 18 17 49 49 H 1.09007 * 110.36683 * 265.51766 * 27 18 17 50 50 H 1.09003 * 109.47216 * 58.54249 * 30 28 27 51 51 H 1.09000 * 109.47547 * 178.54729 * 30 28 27 52 52 H 1.09000 * 109.46876 * 298.54920 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.5680 -0.3920 2.4263 6 6 2.0056 -1.0041 3.5090 7 7 2.9148 -1.9580 3.4557 8 6 3.4292 -2.3431 2.3011 9 6 2.9940 -1.7213 1.1251 10 6 3.5395 -2.1171 -0.1906 11 8 3.7344 -1.2757 -1.0460 12 7 3.8208 -3.4111 -0.4420 13 6 4.3609 -3.8034 -1.7460 14 6 4.5901 -5.3160 -1.7689 15 6 5.1547 -5.7257 -3.1306 16 1 6.0239 -5.1190 -3.3845 17 6 4.0751 -5.6170 -4.2282 18 7 4.2417 -6.7737 -5.1202 19 6 3.4640 -7.0593 -6.2105 20 1 2.6403 -6.4112 -6.4709 21 6 3.7308 -8.1849 -6.9777 22 7 4.7317 -8.9775 -6.6575 23 14 2.6694 -8.5748 -8.4646 24 1 1.6178 -7.5363 -8.6081 25 1 3.5154 -8.5955 -9.6850 26 1 2.0310 -9.9032 -8.2824 27 6 5.3887 -7.5717 -4.6503 28 6 5.5158 -7.2346 -3.1437 29 1 4.8044 -7.8117 -2.5529 30 6 6.9459 -7.4614 -2.6496 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9562 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6070 -0.7149 4.4702 39 1 4.1737 -3.1247 2.2655 40 1 3.6656 -4.0825 0.2407 41 1 5.3073 -3.2903 -1.9165 42 1 3.6535 -3.5308 -2.5291 43 1 3.6439 -5.8295 -1.5981 44 1 5.2977 -5.5882 -0.9857 45 1 4.2075 -4.6928 -4.7908 46 1 3.0843 -5.6385 -3.7743 47 1 4.9183 -9.7639 -7.1938 48 1 5.1920 -8.6353 -4.7858 49 1 6.2954 -7.2821 -5.1816 50 1 7.6323 -6.8419 -3.2269 51 1 7.0131 -7.1927 -1.5953 52 1 7.2113 -8.5112 -2.7746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103727691.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:43 Heat of formation + Delta-G solvation = 16.950436 kcal Electronic energy + Delta-G solvation = -30228.407323 eV Core-core repulsion = 26228.014232 eV Total energy + Delta-G solvation = -4000.393092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.78184 -39.65132 -38.19263 -36.52923 -35.29948 -33.62959 -33.23874 -32.23950 -30.96302 -30.65358 -27.39603 -27.15304 -25.86123 -25.45813 -25.14367 -23.95393 -22.11201 -21.28131 -21.13178 -19.76699 -19.29541 -18.29823 -17.94875 -17.10656 -16.85802 -16.18303 -15.64940 -15.39840 -15.00466 -14.89882 -14.51537 -14.39156 -14.33442 -13.91326 -13.75661 -13.55698 -13.39265 -13.01630 -12.85400 -12.42681 -12.13642 -12.09125 -12.06593 -11.85452 -11.72392 -11.60752 -11.53073 -11.26861 -11.13599 -11.04942 -10.94484 -10.85185 -10.77084 -10.20415 -10.07571 -10.00189 -9.90069 -9.84140 -9.73442 -9.69685 -9.34503 -9.25955 -8.64839 -6.81599 -5.64800 -3.06264 0.08187 0.56332 2.38305 2.80550 3.29231 3.39467 3.45219 3.47580 3.54183 3.62872 3.84871 4.27170 4.43127 4.49251 4.74907 4.76726 4.86581 4.88110 5.00021 5.03652 5.22923 5.34222 5.42735 5.43567 5.49411 5.53131 5.57590 5.62184 5.62614 5.71058 5.73242 5.83825 5.87795 5.92739 5.98425 6.05207 6.09754 6.18204 6.23529 6.25097 6.30966 6.44865 6.53964 6.60273 6.67389 6.81304 6.99947 7.15009 7.55432 7.55797 7.64658 7.84071 7.87246 8.37436 9.23300 9.84280 10.49390 11.38968 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.002118 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.197810 B =13218.499042 C =14427.394225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C -0.132 4.132 4 C 0.240 3.760 5 N -0.516 5.516 6 C 0.313 3.687 7 N -0.525 5.525 8 C 0.182 3.818 9 C -0.239 4.239 10 C 0.565 3.435 11 O -0.520 6.520 12 N -0.718 5.718 13 C 0.117 3.883 14 C -0.117 4.117 15 C -0.092 4.092 16 H 0.073 0.927 17 C 0.140 3.860 18 N -0.606 5.606 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.158 3.842 28 C -0.115 4.115 29 H 0.068 0.932 30 C -0.133 4.133 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.201 0.799 39 H 0.174 0.826 40 H 0.400 0.600 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.019 0.981 46 H 0.022 0.978 47 H 0.251 0.749 48 H 0.105 0.895 49 H 0.011 0.989 50 H 0.050 0.950 51 H 0.042 0.958 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 14.523 20.827 25.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.190 4.190 4 C 0.093 3.907 5 N -0.229 5.229 6 C 0.026 3.974 7 N -0.239 5.239 8 C 0.015 3.985 9 C -0.246 4.246 10 C 0.350 3.650 11 O -0.397 6.397 12 N -0.369 5.369 13 C -0.005 4.005 14 C -0.155 4.155 15 C -0.112 4.112 16 H 0.091 0.909 17 C 0.014 3.986 18 N -0.331 5.331 19 C -0.348 4.348 20 H 0.095 0.905 21 C -0.208 4.208 22 N -0.571 5.571 23 Si 0.744 3.256 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.033 3.967 28 C -0.134 4.134 29 H 0.086 0.914 30 C -0.191 4.191 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.218 0.782 39 H 0.191 0.809 40 H 0.234 0.766 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.037 0.963 46 H 0.040 0.960 47 H 0.062 0.938 48 H 0.122 0.878 49 H 0.029 0.971 50 H 0.069 0.931 51 H 0.061 0.939 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.905 15.241 20.906 26.034 hybrid contribution -0.153 -0.852 -1.104 1.403 sum -3.059 14.389 19.801 24.668 Atomic orbital electron populations 1.21796 0.93195 1.02036 1.02825 1.20540 0.96792 0.97315 0.93576 1.21673 1.01400 0.93542 1.02360 1.21912 0.87046 0.87807 0.93980 1.68323 1.27476 1.28466 0.98636 1.25231 0.87997 0.86621 0.97575 1.68459 1.11634 1.15228 1.28565 1.23494 0.94037 0.94423 0.86512 1.21685 1.03879 1.02592 0.96481 1.17768 0.78164 0.82953 0.86140 1.90798 1.52010 1.50196 1.46654 1.46030 1.65422 1.07742 1.17714 1.21601 0.99501 0.95924 0.83517 1.21804 1.01762 0.93243 0.98716 1.22150 0.98560 0.97421 0.93056 0.90862 1.21375 0.95197 0.91335 0.90741 1.44514 1.34178 1.24406 1.30049 1.19130 1.07856 1.06483 1.01376 0.90508 1.24785 0.98629 0.97791 0.99605 1.69814 1.30742 1.16348 1.40235 0.86015 0.79384 0.77853 0.82369 1.20540 1.21763 1.21778 1.21971 0.88798 0.99890 0.86011 1.22630 0.95720 0.94171 1.00909 0.91391 1.21634 0.96638 1.01460 0.99360 0.91639 0.92976 0.91445 0.87017 0.92360 0.91495 0.92217 0.78242 0.80933 0.76564 0.91048 0.90592 0.91121 0.91477 0.96264 0.96027 0.93836 0.87759 0.97057 0.93071 0.93871 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.02 37.16 0.34 -0.88 16 2 C -0.06 -0.63 2.72 -91.77 -0.25 -0.88 16 3 C -0.13 -1.21 9.18 37.15 0.34 -0.87 16 4 C 0.24 2.46 5.55 -81.82 -0.45 2.00 16 5 N -0.52 -4.92 9.88 -10.48 -0.10 -5.02 16 6 C 0.31 2.51 12.27 -92.03 -1.13 1.38 16 7 N -0.53 -4.57 10.42 -14.24 -0.15 -4.72 16 8 C 0.18 1.47 10.64 -16.77 -0.18 1.29 16 9 C -0.24 -2.33 5.80 -104.69 -0.61 -2.94 16 10 C 0.57 6.29 7.02 -12.33 -0.09 6.21 16 11 O -0.52 -7.43 14.52 5.32 0.08 -7.35 16 12 N -0.72 -6.75 5.50 -61.26 -0.34 -7.09 16 13 C 0.12 1.33 5.56 -4.05 -0.02 1.31 16 14 C -0.12 -1.37 4.73 -26.73 -0.13 -1.49 16 15 C -0.09 -1.47 2.39 -88.77 -0.21 -1.68 16 16 H 0.07 1.15 8.01 -51.93 -0.42 0.73 16 17 C 0.14 2.82 6.25 -3.06 -0.02 2.80 16 18 N -0.61 -15.40 3.39 -170.06 -0.58 -15.98 16 19 C -0.22 -6.14 10.27 -15.06 -0.15 -6.30 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 21 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 22 N -0.92 -26.83 10.09 55.49 0.56 -26.27 16 23 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C 0.16 3.76 5.35 -2.53 -0.01 3.74 16 28 C -0.11 -2.03 3.09 -88.47 -0.27 -2.30 16 29 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 30 C -0.13 -1.95 9.30 37.16 0.35 -1.61 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.57 7.91 -51.93 -0.41 0.16 16 34 H 0.11 1.31 5.31 -51.93 -0.28 1.03 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.20 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.17 0.88 7.81 -52.48 -0.41 0.47 16 40 H 0.40 2.69 7.84 -40.82 -0.32 2.37 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.00 7.68 -51.93 -0.40 0.60 16 43 H 0.07 0.84 7.94 -51.93 -0.41 0.43 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.02 0.43 7.69 -51.93 -0.40 0.03 16 47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.10 2.81 5.88 -51.93 -0.31 2.51 16 49 H 0.01 0.29 8.04 -51.92 -0.42 -0.13 16 50 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 51 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 415.19 15.07 6.26 6.26 Total: -1.00 -32.78 415.19 -10.70 -43.48 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.80 Total: 0.28 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.60 Total: -0.67 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.61 Total: -59.07 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.08 Total: -7.35 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.78 -10.70 -43.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103727691.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.432 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds