Wall clock time and date at job start Wed Apr 1 2020 04:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47466 * 2 1 4 4 C 1.50701 * 109.46851 * 120.00141 * 2 1 3 5 5 N 1.32169 * 120.53488 * 309.87255 * 4 2 1 6 6 C 1.31849 * 120.96555 * 180.29249 * 5 4 2 7 7 N 1.31886 * 122.10086 * 359.74570 * 6 5 4 8 8 C 1.32136 * 120.96082 * 359.97438 * 7 6 5 9 9 C 1.39921 * 120.54145 * 129.63458 * 4 2 1 10 10 C 1.47832 * 120.93861 * 359.97438 * 9 4 2 11 11 O 1.21557 * 120.00419 * 36.89783 * 10 9 4 12 12 N 1.34779 * 120.00369 * 216.90490 * 10 9 4 13 13 C 1.46497 * 120.00524 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47195 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47084 * 180.02562 * 14 13 12 16 16 H 1.08993 * 110.64423 * 51.86125 * 15 14 13 17 17 C 1.54342 * 110.84835 * 288.69205 * 15 14 13 18 18 N 1.47020 * 107.26453 * 219.67391 * 17 15 14 19 19 C 1.36940 * 125.64685 * 178.85477 * 18 17 15 20 20 H 1.07995 * 120.00005 * 359.43640 * 19 18 17 21 21 C 1.38804 * 119.99799 * 179.71502 * 19 18 17 22 22 N 1.31626 * 120.00538 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99807 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47014 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47117 * 120.00309 * 23 21 19 26 26 H 1.48508 * 109.47075 * 239.99964 * 23 21 19 27 27 C 1.47421 * 108.70536 * 358.58656 * 18 17 15 28 28 C 1.54912 * 104.83342 * 24.35611 * 27 18 17 29 29 H 1.08998 * 111.00360 * 81.06350 * 28 27 18 30 30 C 1.52999 * 111.00838 * 204.87952 * 28 27 18 31 31 H 1.09002 * 109.47153 * 60.00304 * 1 2 3 32 32 H 1.09005 * 109.47441 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47713 * 300.00246 * 1 2 3 34 34 H 1.08999 * 109.47097 * 239.99316 * 2 1 3 35 35 H 1.08996 * 109.47467 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.46686 * 299.99982 * 3 2 1 37 37 H 1.09004 * 109.47059 * 59.99640 * 3 2 1 38 38 H 1.07999 * 118.95265 * 179.72582 * 6 5 4 39 39 H 1.08007 * 120.53678 * 179.97438 * 8 7 6 40 40 H 0.97006 * 119.99479 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.46744 * 60.00137 * 13 12 10 42 42 H 1.08997 * 109.46767 * 300.00208 * 13 12 10 43 43 H 1.09001 * 109.47436 * 59.99827 * 14 13 12 44 44 H 1.09005 * 109.47422 * 299.99956 * 14 13 12 45 45 H 1.09001 * 109.98476 * 100.19914 * 17 15 14 46 46 H 1.08999 * 109.77741 * 339.03150 * 17 15 14 47 47 H 0.96996 * 120.00246 * 180.02562 * 22 21 19 48 48 H 1.09003 * 110.37213 * 143.19655 * 27 18 17 49 49 H 1.09007 * 110.36683 * 265.51766 * 27 18 17 50 50 H 1.09003 * 109.47216 * 58.54249 * 30 28 27 51 51 H 1.09000 * 109.47547 * 178.54729 * 30 28 27 52 52 H 1.09000 * 109.46876 * 298.54920 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.5680 -0.3920 2.4263 6 6 2.0056 -1.0041 3.5090 7 7 2.9148 -1.9580 3.4557 8 6 3.4292 -2.3431 2.3011 9 6 2.9940 -1.7213 1.1251 10 6 3.5395 -2.1171 -0.1906 11 8 3.7344 -1.2757 -1.0460 12 7 3.8208 -3.4111 -0.4420 13 6 4.3609 -3.8034 -1.7460 14 6 4.5901 -5.3160 -1.7689 15 6 5.1547 -5.7257 -3.1306 16 1 6.0239 -5.1190 -3.3845 17 6 4.0751 -5.6170 -4.2282 18 7 4.2417 -6.7737 -5.1202 19 6 3.4640 -7.0593 -6.2105 20 1 2.6403 -6.4112 -6.4709 21 6 3.7308 -8.1849 -6.9777 22 7 4.7317 -8.9775 -6.6575 23 14 2.6694 -8.5748 -8.4646 24 1 1.6178 -7.5363 -8.6081 25 1 3.5154 -8.5955 -9.6850 26 1 2.0310 -9.9032 -8.2824 27 6 5.3887 -7.5717 -4.6503 28 6 5.5158 -7.2346 -3.1437 29 1 4.8044 -7.8117 -2.5529 30 6 6.9459 -7.4614 -2.6496 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9562 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6070 -0.7149 4.4702 39 1 4.1737 -3.1247 2.2655 40 1 3.6656 -4.0825 0.2407 41 1 5.3073 -3.2903 -1.9165 42 1 3.6535 -3.5308 -2.5291 43 1 3.6439 -5.8295 -1.5981 44 1 5.2977 -5.5882 -0.9857 45 1 4.2075 -4.6928 -4.7908 46 1 3.0843 -5.6385 -3.7743 47 1 4.9183 -9.7639 -7.1938 48 1 5.1920 -8.6353 -4.7858 49 1 6.2954 -7.2821 -5.1816 50 1 7.6323 -6.8419 -3.2269 51 1 7.0131 -7.1927 -1.5953 52 1 7.2113 -8.5112 -2.7746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103727691.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:42 Heat of formation + Delta-G solvation = -2.735282 kcal Electronic energy + Delta-G solvation = -30229.260960 eV Core-core repulsion = 26228.014232 eV Total energy + Delta-G solvation = -4001.246729 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.46721 -40.53158 -39.67510 -37.27889 -36.37034 -35.04635 -34.20598 -33.10042 -32.52720 -31.99774 -28.56957 -28.10631 -27.48669 -26.36386 -25.98640 -25.26290 -23.47036 -22.10736 -21.87150 -21.38101 -20.67609 -18.98940 -18.84929 -18.76721 -17.75120 -17.22441 -16.87248 -16.52477 -16.14878 -15.73446 -15.68327 -15.59551 -15.27668 -15.06888 -14.79958 -14.54248 -14.52499 -14.16313 -14.08987 -13.68913 -13.48709 -13.36218 -13.10738 -12.85832 -12.80305 -12.78093 -12.73093 -12.54166 -12.40117 -12.33137 -12.20416 -12.00229 -11.92096 -11.74981 -11.62824 -11.41157 -11.23979 -11.09709 -10.84263 -10.74066 -10.73282 -10.35932 -10.12215 -8.86543 -7.77297 -5.21580 -0.58572 -0.09716 1.44901 1.45607 1.56068 1.56608 1.99160 2.48750 2.63117 2.88385 3.08516 3.22015 3.31359 3.54928 3.71276 3.74409 3.75967 3.93715 4.05744 4.08714 4.13739 4.14741 4.29610 4.37173 4.40654 4.53695 4.62192 4.65689 4.74678 4.75758 4.81346 4.85500 4.86970 4.90161 5.03216 5.03968 5.05971 5.13925 5.17429 5.21019 5.25654 5.29796 5.35009 5.38988 5.42815 5.47478 5.57065 5.78529 5.78999 5.87028 6.33362 6.39569 6.91946 7.05721 7.12274 7.80540 8.44029 9.24061 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.002118 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.197810 B =13218.499042 C =14427.394225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.066 4.066 3 C -0.126 4.126 4 C 0.228 3.772 5 N -0.527 5.527 6 C 0.313 3.687 7 N -0.535 5.535 8 C 0.192 3.808 9 C -0.252 4.252 10 C 0.568 3.432 11 O -0.558 6.558 12 N -0.704 5.704 13 C 0.125 3.875 14 C -0.102 4.102 15 C -0.078 4.078 16 H 0.079 0.921 17 C 0.133 3.867 18 N -0.630 5.630 19 C -0.238 4.238 20 H 0.076 0.924 21 C -0.069 4.069 22 N -0.948 5.948 23 Si 0.978 3.022 24 H -0.269 1.269 25 H -0.292 1.292 26 H -0.289 1.289 27 C 0.158 3.842 28 C -0.100 4.100 29 H 0.071 0.929 30 C -0.127 4.127 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.232 0.768 39 H 0.204 0.796 40 H 0.416 0.584 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.101 0.899 45 H 0.011 0.989 46 H 0.026 0.974 47 H 0.246 0.754 48 H 0.067 0.933 49 H -0.018 1.018 50 H 0.047 0.953 51 H 0.082 0.918 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.853 14.941 23.540 28.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.085 4.085 3 C -0.184 4.184 4 C 0.081 3.919 5 N -0.241 5.241 6 C 0.027 3.973 7 N -0.248 5.248 8 C 0.025 3.975 9 C -0.260 4.260 10 C 0.353 3.647 11 O -0.437 6.437 12 N -0.355 5.355 13 C 0.001 3.999 14 C -0.140 4.140 15 C -0.097 4.097 16 H 0.097 0.903 17 C 0.008 3.992 18 N -0.356 5.356 19 C -0.367 4.367 20 H 0.094 0.906 21 C -0.261 4.261 22 N -0.598 5.598 23 Si 0.806 3.194 24 H -0.193 1.193 25 H -0.220 1.220 26 H -0.216 1.216 27 C 0.033 3.967 28 C -0.120 4.120 29 H 0.090 0.910 30 C -0.184 4.184 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.248 0.752 39 H 0.221 0.779 40 H 0.254 0.746 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.029 0.971 46 H 0.044 0.956 47 H 0.056 0.944 48 H 0.086 0.914 49 H 0.000 1.000 50 H 0.066 0.934 51 H 0.101 0.899 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.126 15.661 23.664 28.548 hybrid contribution -0.105 -0.949 -1.937 2.159 sum -3.231 14.712 21.727 26.438 Atomic orbital electron populations 1.21746 0.92274 1.01858 1.03344 1.20496 0.97542 0.97418 0.93024 1.21620 1.00389 0.93380 1.03008 1.21991 0.87477 0.88095 0.94340 1.68367 1.27990 1.29056 0.98686 1.25917 0.87262 0.85806 0.98295 1.68574 1.12026 1.15616 1.28602 1.23962 0.93694 0.94235 0.85567 1.21582 1.04614 1.03442 0.96332 1.17956 0.77548 0.82929 0.86262 1.90785 1.53629 1.51326 1.47956 1.45808 1.64653 1.07678 1.17365 1.21367 0.98917 0.95739 0.83844 1.21653 1.02554 0.93085 0.96672 1.22052 0.97390 0.96311 0.93984 0.90304 1.21594 0.97117 0.89195 0.91283 1.44873 1.34172 1.26307 1.30258 1.19475 1.08196 1.06535 1.02476 0.90566 1.25618 1.00100 0.97893 1.02478 1.70079 1.32133 1.16530 1.41066 0.85013 0.77923 0.77670 0.78761 1.19304 1.21955 1.21594 1.21794 0.87079 0.97601 0.90196 1.22466 0.98129 0.95216 0.96183 0.91018 1.21598 0.93990 1.01297 1.01555 0.90847 0.93461 0.91140 0.89039 0.93799 0.90683 0.91670 0.75156 0.77912 0.74633 0.91167 0.92888 0.90841 0.88022 0.97066 0.95602 0.94389 0.91449 1.00040 0.93356 0.89899 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.02 71.98 0.65 -1.60 16 2 C -0.07 -1.31 2.72 -11.54 -0.03 -1.34 16 3 C -0.13 -2.30 9.18 71.98 0.66 -1.64 16 4 C 0.23 4.47 5.55 42.92 0.24 4.71 16 5 N -0.53 -9.25 9.88 -187.07 -1.85 -11.10 16 6 C 0.31 4.28 12.27 180.84 2.22 6.49 16 7 N -0.53 -7.84 10.42 -198.97 -2.07 -9.91 16 8 C 0.19 2.57 10.64 85.07 0.91 3.47 16 9 C -0.25 -4.55 5.80 -19.91 -0.12 -4.67 16 10 C 0.57 12.00 7.02 86.78 0.61 12.61 16 11 O -0.56 -16.00 14.52 -3.90 -0.06 -16.06 16 12 N -0.70 -11.57 5.50 -465.99 -2.56 -14.13 16 13 C 0.12 2.58 5.56 86.38 0.48 3.06 16 14 C -0.10 -2.04 4.73 30.59 0.14 -1.89 16 15 C -0.08 -2.34 2.39 -9.60 -0.02 -2.37 16 16 H 0.08 2.32 8.01 -2.39 -0.02 2.30 16 17 C 0.13 5.40 6.25 86.74 0.54 5.94 16 18 N -0.63 -32.89 3.39 -691.95 -2.35 -35.24 16 19 C -0.24 -13.61 10.27 84.03 0.86 -12.75 16 20 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 21 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 22 N -0.95 -57.12 10.09 21.65 0.22 -56.90 16 23 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 27 C 0.16 7.75 5.35 86.86 0.47 8.21 16 28 C -0.10 -3.42 3.09 -9.40 -0.03 -3.45 16 29 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16 30 C -0.13 -3.40 9.30 71.98 0.67 -2.73 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.07 1.12 7.91 -2.39 -0.02 1.11 16 34 H 0.09 2.21 5.31 -2.39 -0.01 2.20 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.23 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.20 1.26 7.81 -2.91 -0.02 1.24 16 40 H 0.42 4.12 7.84 -92.70 -0.73 3.39 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.05 1.36 7.68 -2.39 -0.02 1.34 16 43 H 0.07 1.50 7.94 -2.39 -0.02 1.48 16 44 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 46 H 0.03 1.03 7.69 -2.39 -0.02 1.01 16 47 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 48 H 0.07 3.80 5.88 -2.39 -0.01 3.79 16 49 H -0.02 -0.98 8.04 -2.38 -0.02 -1.00 16 50 H 0.05 1.32 8.11 -2.39 -0.02 1.30 16 51 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -74.95 415.19 2.25 -72.70 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.18 Total: 13.66 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 8.71 Total: 8.59 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -8.61 Total: -127.28 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.06 Total: -16.06 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -74.95 2.25 -72.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103727691.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.964 kcal (2) G-P(sol) polarization free energy of solvation -74.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds