Wall clock time and date at job start Wed Apr 1 2020 04:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.64366 * 2 1 4 4 C 1.54326 * 110.87091 * 236.75067 * 2 1 3 5 5 N 1.47025 * 107.27056 * 219.37216 * 4 2 1 6 6 C 1.36936 * 125.64676 * 178.99717 * 5 4 2 7 7 H 1.07999 * 119.99926 * 179.97438 * 6 5 4 8 8 C 1.38811 * 120.00200 * 359.97438 * 6 5 4 9 9 N 1.31620 * 119.99610 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00034 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47129 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47284 * 120.00007 * 10 8 6 13 13 H 1.48502 * 109.46954 * 239.99768 * 10 8 6 14 14 C 1.47469 * 108.72236 * 358.97820 * 5 4 2 15 15 C 1.54913 * 104.81223 * 24.06792 * 14 5 4 16 16 H 1.08990 * 111.00287 * 81.13523 * 15 14 5 17 17 C 1.52995 * 111.00359 * 204.95020 * 15 14 5 18 18 C 1.52996 * 109.47508 * 290.41817 * 17 15 14 19 19 N 1.46495 * 109.47385 * 179.97438 * 18 17 15 20 20 C 1.34781 * 119.99781 * 179.97438 * 19 18 17 21 21 O 1.21557 * 120.00138 * 359.97438 * 20 19 18 22 22 C 1.47845 * 119.99661 * 180.02562 * 20 19 18 23 23 C 1.39527 * 119.63425 * 180.02562 * 22 20 19 24 24 C 1.38226 * 119.15777 * 180.02562 * 23 22 20 25 25 C 1.39444 * 118.42941 * 359.97438 * 24 23 22 26 26 N 1.39073 * 120.40322 * 180.02562 * 25 24 23 27 27 C 1.46503 * 119.99600 * 354.32009 * 26 25 24 28 28 C 1.46492 * 120.00095 * 174.32020 * 26 25 24 29 29 C 1.39463 * 119.19631 * 0.02562 * 25 24 23 30 30 N 1.31326 * 120.77560 * 0.02688 * 29 25 24 31 31 H 1.09002 * 109.47381 * 296.86314 * 1 2 3 32 32 H 1.09005 * 109.47114 * 56.85523 * 1 2 3 33 33 H 1.08993 * 109.47487 * 176.85790 * 1 2 3 34 34 H 1.09000 * 109.88276 * 338.79374 * 4 2 1 35 35 H 1.09002 * 109.88092 * 99.95635 * 4 2 1 36 36 H 0.97000 * 119.99689 * 180.02562 * 9 8 6 37 37 H 1.09000 * 110.34473 * 265.25430 * 14 5 4 38 38 H 1.08995 * 110.40381 * 142.91718 * 14 5 4 39 39 H 1.09005 * 109.46998 * 170.41732 * 17 15 14 40 40 H 1.09012 * 109.47424 * 50.42223 * 17 15 14 41 41 H 1.09005 * 109.47061 * 59.99954 * 18 17 15 42 42 H 1.08996 * 109.47077 * 300.00255 * 18 17 15 43 43 H 0.96999 * 120.00083 * 0.02562 * 19 18 17 44 44 H 1.08003 * 120.42176 * 0.27379 * 23 22 20 45 45 H 1.08001 * 120.78602 * 179.97438 * 24 23 22 46 46 H 1.08995 * 109.47237 * 5.05258 * 27 26 25 47 47 H 1.08995 * 109.46816 * 125.05643 * 27 26 25 48 48 H 1.08998 * 109.46616 * 245.05465 * 27 26 25 49 49 H 1.08997 * 109.47430 * 89.99752 * 28 26 25 50 50 H 1.09000 * 109.47330 * 210.00257 * 28 26 25 51 51 H 1.09004 * 109.46893 * 329.99572 * 28 26 25 52 52 H 1.08001 * 119.61119 * 179.97438 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0798 -0.7906 -1.2059 5 7 3.2494 -1.5471 -0.7353 6 6 4.0126 -2.3916 -1.4965 7 1 4.8556 -2.9028 -1.0555 8 6 3.7029 -2.5907 -2.8349 9 7 2.6752 -1.9681 -3.3722 10 14 4.7436 -3.7433 -3.8730 11 1 5.8309 -4.3151 -3.0387 12 1 3.8925 -4.8410 -4.3982 13 1 5.3351 -2.9895 -5.0075 14 6 3.4651 -1.2456 0.6920 15 6 2.0789 -0.7934 1.2152 16 1 1.4465 -1.6525 1.4387 17 6 2.2236 0.1111 2.4406 18 6 2.7230 -0.7146 3.6279 19 7 2.8622 0.1517 4.8011 20 6 3.2906 -0.3622 5.9711 21 8 3.5612 -1.5444 6.0530 22 6 3.4305 0.5119 7.1552 23 6 3.8752 -0.0279 8.3626 24 6 4.0019 0.7982 9.4635 25 6 3.6784 2.1472 9.3221 26 7 3.7912 3.0152 10.4028 27 6 4.1317 2.4934 11.7288 28 6 3.5696 4.4510 10.2154 29 6 3.2402 2.6155 8.0836 30 7 3.1305 1.8023 7.0583 31 1 -0.3634 0.4644 0.9168 32 1 -0.3633 0.5619 -0.8605 33 1 -0.3634 -1.0260 -0.0563 34 1 1.3189 -1.4773 -1.5770 35 1 2.3774 -0.1016 -1.9963 36 1 2.4585 -2.1075 -4.3073 37 1 4.1933 -0.4422 0.8038 38 1 3.7984 -2.1374 1.2226 39 1 1.2561 0.5499 2.6846 40 1 2.9384 0.9051 2.2239 41 1 3.6906 -1.1534 3.3839 42 1 2.0083 -1.5084 3.8446 43 1 2.6452 1.0948 4.7360 44 1 4.1212 -1.0770 8.4349 45 1 4.3433 0.4081 10.4110 46 1 4.3455 1.4271 11.6557 47 1 5.0097 3.0148 12.1098 48 1 3.2931 2.6502 12.4071 49 1 2.5160 4.6800 10.3752 50 1 4.1751 5.0085 10.9300 51 1 3.8530 4.7330 9.2013 52 1 2.9875 3.6589 7.9666 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103763889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:45 Heat of formation + Delta-G solvation = 29.844762 kcal Electronic energy + Delta-G solvation = -29395.103158 eV Core-core repulsion = 25395.269206 eV Total energy + Delta-G solvation = -3999.833952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.92608 -39.31273 -38.06871 -37.16614 -35.16104 -33.19955 -32.68019 -31.44145 -30.66876 -30.44229 -29.03624 -27.09230 -26.01113 -25.46456 -24.03637 -23.64529 -22.54472 -21.79076 -20.64790 -19.71909 -19.14071 -18.38369 -17.48261 -17.02990 -16.71839 -15.87672 -15.68908 -15.52006 -15.22556 -14.94733 -14.69968 -14.36506 -14.22430 -14.00444 -13.89549 -13.60481 -13.33456 -13.18746 -12.99272 -12.85734 -12.66282 -12.47239 -12.23562 -12.20288 -11.79293 -11.62834 -11.29221 -11.14584 -10.97889 -10.90252 -10.71634 -10.67984 -10.32876 -9.97391 -9.95360 -9.83989 -9.77737 -9.71752 -9.55316 -9.39366 -8.95501 -8.51662 -7.94916 -6.72073 -5.62307 -2.94839 0.58181 0.93315 2.41523 2.70392 3.19328 3.45677 3.51282 3.53780 3.72875 4.02834 4.18818 4.32866 4.46939 4.57863 4.66744 4.70544 4.74687 4.92349 4.95111 5.03139 5.09387 5.09757 5.22918 5.35541 5.39776 5.48500 5.55174 5.59817 5.68752 5.76127 5.79471 5.86497 6.01996 6.04950 6.11316 6.20156 6.32003 6.36431 6.45449 6.46417 6.53410 6.61831 6.70477 6.72808 6.76219 6.89730 7.11805 7.41001 7.67266 7.70382 7.75020 7.93587 8.26095 8.35998 9.32103 9.92579 10.59532 11.49456 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022118 B = 0.001678 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.657072 B =16682.673957 C =17362.756417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.064 0.936 4 C 0.184 3.816 5 N -0.607 5.607 6 C -0.224 4.224 7 H 0.078 0.922 8 C -0.011 4.011 9 N -0.923 5.923 10 Si 0.910 3.090 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.139 3.861 15 C -0.095 4.095 16 H 0.076 0.924 17 C -0.116 4.116 18 C 0.117 3.883 19 N -0.711 5.711 20 C 0.573 3.427 21 O -0.542 6.542 22 C 0.013 3.987 23 C -0.055 4.055 24 C -0.173 4.173 25 C 0.187 3.813 26 N -0.624 5.624 27 C 0.084 3.916 28 C 0.087 3.913 29 C 0.027 3.973 30 N -0.415 5.415 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.039 0.961 36 H 0.250 0.750 37 H 0.017 0.983 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.408 0.592 44 H 0.148 0.852 45 H 0.141 0.859 46 H 0.080 0.920 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.055 0.945 50 H 0.072 0.928 51 H 0.073 0.927 52 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.144 14.432 31.446 34.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 H 0.082 0.918 4 C 0.059 3.941 5 N -0.333 5.333 6 C -0.352 4.352 7 H 0.095 0.905 8 C -0.207 4.207 9 N -0.571 5.571 10 Si 0.741 3.259 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.219 1.219 14 C 0.013 3.987 15 C -0.115 4.115 16 H 0.094 0.906 17 C -0.154 4.154 18 C -0.006 4.006 19 N -0.362 5.362 20 C 0.359 3.641 21 O -0.419 6.419 22 C -0.126 4.126 23 C -0.077 4.077 24 C -0.203 4.203 25 C 0.080 3.920 26 N -0.334 5.334 27 C -0.059 4.059 28 C -0.055 4.055 29 C -0.139 4.139 30 N -0.125 5.125 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.244 0.756 44 H 0.166 0.834 45 H 0.159 0.841 46 H 0.098 0.902 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.090 0.910 51 H 0.092 0.908 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.206 13.906 30.584 33.618 hybrid contribution 0.729 -0.317 0.253 0.834 sum -0.477 13.589 30.837 33.701 Atomic orbital electron populations 1.21672 0.95606 1.01506 1.00243 1.22482 0.94915 0.98962 0.97039 0.91799 1.21197 0.89042 0.93059 0.90788 1.44497 1.32375 1.51649 1.04813 1.19133 1.07267 1.17561 0.91256 0.90452 1.24792 0.98510 1.00483 0.96912 1.69986 1.28841 1.45861 1.12400 0.86057 0.79334 0.80154 0.80341 1.20538 1.21835 1.21870 1.21633 0.93392 0.97103 0.86607 1.22324 0.98813 0.97582 0.92756 0.90553 1.21737 1.01244 0.98573 0.93842 1.21528 1.02180 0.93208 0.83681 1.45896 1.66616 1.13754 1.09895 1.17743 0.77323 0.86609 0.82448 1.90794 1.50937 1.15662 1.84498 1.20837 1.06437 0.90695 0.94674 1.21882 0.93289 1.01380 0.91107 1.21129 1.06943 0.91868 1.00322 1.19124 0.93191 0.90679 0.89020 1.46251 1.74532 1.05977 1.06636 1.21811 1.00432 1.00667 0.82962 1.21751 1.01368 0.79480 1.02931 1.22353 1.04314 0.99989 0.87272 1.67342 1.10424 1.03483 1.31278 0.93799 0.93062 0.92795 0.93493 0.94305 0.93951 0.96492 0.94421 0.91593 0.91296 0.90871 0.91365 0.75622 0.83436 0.84123 0.90189 0.92014 0.92365 0.92665 0.90967 0.90827 0.82365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.17 37.16 0.34 -1.79 16 2 C -0.11 -2.15 3.01 -88.79 -0.27 -2.42 16 3 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 4 C 0.18 4.56 4.97 -3.06 -0.02 4.55 16 5 N -0.61 -16.05 3.40 -170.03 -0.58 -16.63 16 6 C -0.22 -6.46 10.28 -15.06 -0.15 -6.62 16 7 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 8 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 9 N -0.92 -27.82 10.31 55.49 0.57 -27.25 16 10 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 C 0.14 2.96 6.04 -2.50 -0.02 2.95 16 15 C -0.09 -1.66 2.48 -88.47 -0.22 -1.88 16 16 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 17 C -0.12 -1.58 4.84 -26.74 -0.13 -1.71 16 18 C 0.12 1.65 5.55 -4.05 -0.02 1.62 16 19 N -0.71 -9.28 5.54 -61.25 -0.34 -9.62 16 20 C 0.57 8.29 7.80 -12.33 -0.10 8.19 16 21 O -0.54 -9.45 16.31 5.32 0.09 -9.37 16 22 C 0.01 0.16 6.74 -83.02 -0.56 -0.40 16 23 C -0.06 -0.56 9.62 -39.11 -0.38 -0.94 16 24 C -0.17 -1.34 9.39 -39.14 -0.37 -1.71 16 25 C 0.19 1.40 6.55 -83.67 -0.55 0.85 16 26 N -0.62 -3.18 3.39 -187.40 -0.64 -3.82 16 27 C 0.08 0.25 10.63 59.85 0.64 0.89 16 28 C 0.09 0.26 10.10 59.84 0.60 0.86 16 29 C 0.03 0.23 10.33 -17.31 -0.18 0.05 16 30 N -0.41 -4.53 9.52 -9.63 -0.09 -4.62 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.05 1.29 7.02 -51.93 -0.36 0.92 16 35 H 0.04 1.07 7.51 -51.93 -0.39 0.68 16 36 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.02 0.37 7.96 -51.93 -0.41 -0.05 16 38 H 0.04 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.93 8.04 -51.92 -0.42 0.51 16 41 H 0.07 1.14 7.60 -51.93 -0.39 0.75 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.41 4.63 7.79 -40.82 -0.32 4.32 16 44 H 0.15 1.44 7.63 -52.48 -0.40 1.04 16 45 H 0.14 0.72 5.84 -52.49 -0.31 0.41 16 46 H 0.08 0.21 5.35 -51.93 -0.28 -0.07 16 47 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 48 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 49 H 0.05 0.14 8.14 -51.93 -0.42 -0.29 16 50 H 0.07 0.11 8.07 -51.93 -0.42 -0.31 16 51 H 0.07 0.20 6.46 -51.93 -0.34 -0.14 16 52 H 0.16 0.93 6.31 -52.49 -0.33 0.60 16 LS Contribution 413.27 15.07 6.23 6.23 Total: -1.00 -35.09 413.27 -9.79 -44.89 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.55 Total: 0.33 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -1.46 Total: 2.09 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -1.07 Total: -61.94 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.09 -9.79 -44.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103763889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.733 kcal (2) G-P(sol) polarization free energy of solvation -35.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds