Wall clock time and date at job start Wed Apr 1 2020 04:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.28857 * 2 1 4 4 C 1.53996 * 110.33054 * 237.86532 * 2 1 3 5 5 N 1.47483 * 107.24864 * 242.21533 * 4 2 1 6 6 C 1.34781 * 127.03760 * 154.61313 * 5 4 2 7 7 O 1.21273 * 119.99982 * 174.99607 * 6 5 4 8 8 C 1.50705 * 119.99649 * 354.99983 * 6 5 4 9 9 H 1.08996 * 109.71159 * 334.37296 * 8 6 5 10 10 C 1.53383 * 109.71904 * 94.98254 * 8 6 5 11 11 C 1.53025 * 109.72487 * 170.22857 * 10 8 6 12 12 C 1.53370 * 109.75096 * 288.29568 * 11 10 8 13 13 C 1.50954 * 108.20887 * 50.66247 * 12 11 10 14 14 N 1.30119 * 128.28855 * 163.23659 * 13 12 11 15 15 N 1.40309 * 108.12489 * 180.15037 * 14 13 12 16 16 H 0.96998 * 126.00922 * 179.97438 * 15 14 13 17 17 C 1.35197 * 107.99237 * 359.96267 * 15 14 13 18 18 C 1.34512 * 107.63546 * 359.97438 * 17 15 14 19 19 C 1.48383 * 105.79449 * 334.77920 * 5 4 2 20 20 C 1.54619 * 110.41613 * 122.18822 * 2 1 3 21 21 H 1.08997 * 110.73625 * 22.45323 * 20 2 1 22 22 C 1.53002 * 110.73923 * 259.12744 * 20 2 1 23 23 C 1.53001 * 109.46617 * 174.99871 * 22 20 2 24 24 N 1.46498 * 109.46819 * 179.97438 * 23 22 20 25 25 C 1.36937 * 119.99908 * 180.02562 * 24 23 22 26 26 H 1.07998 * 120.00443 * 359.97438 * 25 24 23 27 27 C 1.38816 * 119.99977 * 180.02562 * 25 24 23 28 28 N 1.31621 * 119.99933 * 359.97438 * 27 25 24 29 29 Si 1.86799 * 120.00175 * 180.02562 * 27 25 24 30 30 H 1.48498 * 109.46848 * 359.97438 * 29 27 25 31 31 H 1.48502 * 109.47454 * 119.99459 * 29 27 25 32 32 H 1.48504 * 109.46876 * 239.99603 * 29 27 25 33 33 H 1.09004 * 109.46982 * 180.67922 * 1 2 3 34 34 H 1.09002 * 109.47216 * 300.67891 * 1 2 3 35 35 H 1.09001 * 109.47451 * 60.68694 * 1 2 3 36 36 H 1.09002 * 109.91347 * 1.66952 * 4 2 1 37 37 H 1.09003 * 109.91974 * 122.75534 * 4 2 1 38 38 H 1.08996 * 109.42861 * 290.31056 * 10 8 6 39 39 H 1.09008 * 109.42672 * 50.15336 * 10 8 6 40 40 H 1.08996 * 109.41933 * 48.37986 * 11 10 8 41 41 H 1.09000 * 109.42277 * 168.21515 * 11 10 8 42 42 H 1.09000 * 109.71813 * 170.34028 * 12 11 10 43 43 H 1.09005 * 109.72219 * 290.94319 * 12 11 10 44 44 H 1.08004 * 126.19695 * 179.97438 * 17 15 14 45 45 H 1.09003 * 110.52186 * 280.62888 * 19 5 4 46 46 H 1.09000 * 110.69592 * 157.58757 * 19 5 4 47 47 H 1.08997 * 109.46877 * 294.99389 * 22 20 2 48 48 H 1.08994 * 109.47260 * 55.00124 * 22 20 2 49 49 H 1.08996 * 109.47307 * 299.99892 * 23 22 20 50 50 H 1.09004 * 109.47109 * 59.99996 * 23 22 20 51 51 H 0.96999 * 120.00269 * 359.97438 * 24 23 22 52 52 H 0.96999 * 119.99867 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2228 5 7 2.8326 -1.9201 -0.7141 6 6 3.0690 -3.0836 -1.3520 7 8 3.7957 -3.9141 -0.8490 8 6 2.4304 -3.3524 -2.6903 9 1 1.5113 -2.7737 -2.7819 10 6 3.4002 -2.9650 -3.8137 11 6 2.8582 -3.4585 -5.1569 12 6 2.9794 -4.9854 -5.2353 13 6 2.3742 -5.5715 -3.9828 14 7 1.9989 -6.7986 -3.7666 15 7 1.4923 -6.8764 -2.4605 16 1 1.1407 -7.6723 -2.0317 17 6 1.5804 -5.6473 -1.9044 18 6 2.1214 -4.8236 -2.8200 19 6 3.2864 -1.5346 0.6451 20 6 2.0693 -0.7719 1.2264 21 1 1.3211 -1.4691 1.6032 22 6 2.5113 0.1970 2.3249 23 6 2.9217 -0.5948 3.5682 24 7 3.3454 0.3329 4.6199 25 6 3.7601 -0.1500 5.8324 26 1 3.7744 -1.2145 6.0135 27 6 4.1611 0.7290 6.8292 28 7 4.1433 2.0265 6.6087 29 14 4.7275 0.0704 8.4829 30 1 4.6550 -1.4128 8.4761 31 1 6.1279 0.4969 8.7323 32 1 3.8492 0.6037 9.5551 33 1 -0.3633 -1.0276 0.0122 34 1 -0.3634 0.5243 0.8838 35 1 -0.3634 0.5031 -0.8961 36 1 1.2334 -1.1173 -1.8349 37 1 2.7140 -0.1210 -1.8130 38 1 3.5074 -1.8807 -3.8422 39 1 4.3728 -3.4200 -3.6259 40 1 1.8107 -3.1726 -5.2521 41 1 3.4314 -3.0074 -5.9669 42 1 2.4422 -5.3525 -6.1098 43 1 4.0299 -5.2680 -5.3038 44 1 1.2723 -5.3755 -0.9056 45 1 4.1571 -0.8815 0.5863 46 1 3.5072 -2.4190 1.2427 47 1 3.3590 0.7842 1.9720 48 1 1.6861 0.8638 2.5749 49 1 2.0740 -1.1821 3.9211 50 1 3.7469 -1.2616 3.3183 51 1 3.3330 1.2890 4.4572 52 1 4.4238 2.6407 7.3050 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104196423.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:03 Heat of formation + Delta-G solvation = 33.598038 kcal Electronic energy + Delta-G solvation = -30626.747886 eV Core-core repulsion = 26627.076688 eV Total energy + Delta-G solvation = -3999.671198 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.84513 -40.18517 -38.23191 -36.57515 -35.13553 -33.28188 -32.50254 -32.05578 -30.82001 -30.20940 -28.99972 -27.19668 -26.56921 -25.19637 -24.02233 -22.61089 -22.19448 -21.57501 -20.74040 -20.07902 -19.36141 -18.98058 -17.83428 -17.29231 -17.07889 -15.99819 -15.68626 -15.33794 -15.03625 -14.67478 -14.58546 -14.47550 -14.29488 -13.99530 -13.56970 -13.37354 -13.28029 -13.21783 -13.04578 -13.02117 -12.81029 -12.53124 -12.33931 -12.09747 -11.70791 -11.63893 -11.47893 -11.34995 -11.23020 -11.17757 -11.01204 -10.83542 -10.70328 -10.55931 -10.44086 -10.27258 -9.95088 -9.77364 -9.65587 -9.62321 -8.85865 -8.76772 -8.67844 -6.90270 -5.75397 -3.03686 1.68296 2.39206 2.52056 2.62365 2.94184 3.44389 3.50200 3.52405 4.05936 4.28210 4.39533 4.41007 4.52576 4.57573 4.64531 4.69571 4.80895 4.86735 5.00671 5.02126 5.10738 5.17234 5.26096 5.29569 5.35108 5.35865 5.46342 5.49003 5.52093 5.54996 5.60025 5.61970 5.74217 5.74593 5.77313 5.85302 5.88814 5.90572 5.95614 6.00979 6.07136 6.17603 6.28681 6.35779 6.37892 6.45118 6.85749 6.89583 7.03735 7.42643 7.47657 7.72398 8.10726 8.43990 9.55015 10.13450 10.47838 11.47707 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016644 B = 0.002083 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.914444 B =13435.875746 C =14242.300728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.088 0.912 4 C 0.103 3.897 5 N -0.622 5.622 6 C 0.535 3.465 7 O -0.533 6.533 8 C -0.021 4.021 9 H 0.094 0.906 10 C -0.107 4.107 11 C -0.112 4.112 12 C -0.040 4.040 13 C 0.089 3.911 14 N -0.292 5.292 15 N -0.483 5.483 16 H 0.440 0.560 17 C 0.086 3.914 18 C -0.222 4.222 19 C 0.109 3.891 20 C -0.090 4.090 21 H 0.083 0.917 22 C -0.115 4.115 23 C 0.152 3.848 24 N -0.734 5.734 25 C -0.237 4.237 26 H 0.070 0.930 27 C -0.016 4.016 28 N -0.934 5.934 29 Si 0.906 3.094 30 H -0.280 1.280 31 H -0.291 1.291 32 H -0.292 1.292 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.172 0.828 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.017 0.983 50 H 0.019 0.981 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.877 -9.179 -27.556 30.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.107 0.893 4 C -0.020 4.020 5 N -0.356 5.356 6 C 0.324 3.676 7 O -0.408 6.408 8 C -0.043 4.043 9 H 0.112 0.888 10 C -0.145 4.145 11 C -0.150 4.150 12 C -0.079 4.079 13 C -0.080 4.080 14 N -0.114 5.114 15 N -0.191 5.191 16 H 0.284 0.716 17 C -0.061 4.061 18 C -0.234 4.234 19 C -0.013 4.013 20 C -0.110 4.110 21 H 0.101 0.899 22 C -0.153 4.153 23 C 0.024 3.976 24 N -0.378 5.378 25 C -0.368 4.368 26 H 0.088 0.912 27 C -0.212 4.212 28 N -0.583 5.583 29 Si 0.738 3.262 30 H -0.206 1.206 31 H -0.218 1.218 32 H -0.219 1.219 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.189 0.811 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.035 0.965 50 H 0.036 0.964 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.515 -11.028 -27.686 30.994 hybrid contribution 0.136 0.451 1.792 1.853 sum -8.379 -10.577 -25.894 29.199 Atomic orbital electron populations 1.21839 0.94118 1.01899 1.02119 1.22164 0.96390 0.99871 0.93855 0.89322 1.22257 0.95453 0.87482 0.96835 1.48961 1.53569 1.14984 1.18098 1.20197 0.81219 0.79926 0.86294 1.90723 1.37270 1.45269 1.67578 1.19649 0.99336 0.92681 0.92654 0.88818 1.21502 0.98748 1.01248 0.92974 1.21542 1.02113 0.94275 0.97055 1.20153 1.00778 0.94715 0.92298 1.22284 0.98374 0.90590 0.96726 1.76972 1.19145 1.19436 0.95821 1.46257 1.51922 1.09804 1.11114 0.71643 1.21996 0.99537 0.85544 0.98994 1.19389 1.12910 0.95948 0.95120 1.22681 0.96904 0.99836 0.81883 1.22333 0.96898 0.97307 0.94452 0.89911 1.21722 1.01291 0.97649 0.94619 1.20675 0.96358 0.92819 0.87730 1.42375 1.79040 1.05161 1.11260 1.19288 1.35450 0.92159 0.89926 0.91174 1.24747 1.02539 0.95342 0.98559 1.69670 1.54409 1.00692 1.33562 0.86117 0.78041 0.77884 0.84186 1.20561 1.21849 1.21884 0.92673 0.91856 0.92594 0.90761 0.91411 0.90863 0.90774 0.91183 0.90422 0.89832 0.89649 0.81053 0.90687 0.89691 0.91607 0.91405 0.96543 0.96358 0.78335 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.90 37.16 0.33 -0.77 16 2 C -0.10 -0.91 3.17 -89.25 -0.28 -1.19 16 3 H 0.09 0.77 7.85 -51.93 -0.41 0.36 16 4 C 0.10 0.82 6.44 -2.98 -0.02 0.80 16 5 N -0.62 -6.84 3.30 -169.55 -0.56 -7.40 16 6 C 0.54 6.55 6.65 -10.98 -0.07 6.48 16 7 O -0.53 -8.79 16.37 5.56 0.09 -8.70 16 8 C -0.02 -0.19 2.54 -92.63 -0.24 -0.43 16 9 H 0.09 0.68 6.51 -51.93 -0.34 0.34 16 10 C -0.11 -0.80 5.17 -26.52 -0.14 -0.94 16 11 C -0.11 -0.64 5.86 -26.53 -0.16 -0.79 16 12 C -0.04 -0.29 6.31 -27.57 -0.17 -0.47 16 13 C 0.09 0.94 7.10 -82.32 -0.58 0.36 16 14 N -0.29 -3.39 12.68 33.76 0.43 -2.96 16 15 N -0.48 -4.64 7.37 30.34 0.22 -4.42 16 16 H 0.44 2.81 8.96 -182.44 -1.64 1.17 16 17 C 0.09 0.87 11.16 -17.39 -0.19 0.68 16 18 C -0.22 -2.35 5.05 -104.98 -0.53 -2.88 16 19 C 0.11 1.38 5.93 -1.98 -0.01 1.37 16 20 C -0.09 -1.05 2.59 -88.74 -0.23 -1.28 16 21 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 22 C -0.11 -1.70 4.70 -26.73 -0.13 -1.83 16 23 C 0.15 3.01 6.15 -4.04 -0.02 2.98 16 24 N -0.73 -18.74 5.60 -59.91 -0.34 -19.08 16 25 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 26 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 27 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 28 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 29 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 30 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 31 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 32 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.46 6.22 -51.93 -0.32 0.14 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.69 8.08 -51.92 -0.42 0.27 16 40 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 45 H 0.07 0.97 7.94 -51.93 -0.41 0.56 16 46 H 0.08 1.24 7.89 -51.93 -0.41 0.83 16 47 H 0.07 0.99 7.99 -51.93 -0.41 0.57 16 48 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.02 0.37 7.67 -51.93 -0.40 -0.02 16 51 H 0.38 10.18 7.67 -40.82 -0.31 9.87 16 52 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 410.82 15.07 6.19 6.19 Total: -1.00 -35.88 410.82 -11.05 -46.93 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -10.10 Total: 4.88 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.69 Total: -5.38 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 0.48 Total: -61.60 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.88 -11.05 -46.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104196423.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.527 kcal (2) G-P(sol) polarization free energy of solvation -35.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds