Wall clock time and date at job start Wed Apr 1 2020 04:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.91206 * 2 1 4 4 C 1.54913 * 111.00483 * 236.09943 * 2 1 3 5 5 N 1.47421 * 104.82908 * 204.91471 * 4 2 1 6 6 C 1.34780 * 125.65046 * 204.09360 * 5 4 2 7 7 O 1.21627 * 120.00296 * 174.58366 * 6 5 4 8 8 C 1.47162 * 119.99580 * 354.58226 * 6 5 4 9 9 C 1.38410 * 126.88765 * 353.24849 * 8 6 5 10 10 C 1.39672 * 105.36336 * 180.02562 * 9 8 6 11 11 N 1.30868 * 107.85732 * 359.97438 * 10 9 8 12 12 N 1.28440 * 110.93091 * 359.72024 * 11 10 9 13 13 C 1.46499 * 125.19343 * 180.27958 * 12 11 10 14 14 C 1.53785 * 113.61229 * 31.24678 * 13 12 11 15 15 C 1.53953 * 87.01698 * 220.04886 * 14 13 12 16 16 C 1.53782 * 113.61058 * 293.64163 * 13 12 11 17 17 C 1.47022 * 108.70684 * 24.12669 * 5 4 2 18 18 C 1.54323 * 107.26828 * 358.94036 * 17 5 4 19 19 H 1.09003 * 110.71967 * 96.34698 * 18 17 5 20 20 C 1.52998 * 110.71978 * 219.43913 * 18 17 5 21 21 C 1.52999 * 109.47407 * 293.54798 * 20 18 17 22 22 N 1.46498 * 109.47566 * 179.97438 * 21 20 18 23 23 C 1.36938 * 120.00348 * 180.02562 * 22 21 20 24 24 H 1.07998 * 119.99976 * 359.72245 * 23 22 21 25 25 C 1.38813 * 119.99987 * 179.72602 * 23 22 21 26 26 N 1.31621 * 119.99795 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00050 * 359.97438 * 25 23 22 28 28 H 1.48510 * 109.47161 * 90.00113 * 27 25 23 29 29 H 1.48501 * 109.47425 * 210.00155 * 27 25 23 30 30 H 1.48497 * 109.47423 * 330.00531 * 27 25 23 31 31 H 1.08996 * 109.47362 * 296.09759 * 1 2 3 32 32 H 1.08997 * 109.47017 * 56.09741 * 1 2 3 33 33 H 1.08998 * 109.46769 * 176.09764 * 1 2 3 34 34 H 1.09000 * 110.36285 * 86.07646 * 4 2 1 35 35 H 1.08991 * 110.36784 * 323.74955 * 4 2 1 36 36 H 1.08006 * 127.31401 * 359.97438 * 9 8 6 37 37 H 1.07996 * 126.06663 * 179.97438 * 10 9 8 38 38 H 1.08999 * 112.85180 * 162.43968 * 13 12 11 39 39 H 1.09001 * 113.61370 * 334.56675 * 14 13 12 40 40 H 1.08995 * 113.61282 * 105.47173 * 14 13 12 41 41 H 1.08996 * 113.54055 * 270.80900 * 15 14 13 42 42 H 1.09009 * 113.74029 * 139.94260 * 15 14 13 43 43 H 1.08999 * 113.61095 * 254.52462 * 16 13 12 44 44 H 1.09000 * 113.61758 * 25.34719 * 16 13 12 45 45 H 1.08999 * 109.88653 * 239.52072 * 17 5 4 46 46 H 1.09004 * 110.01250 * 118.42612 * 17 5 4 47 47 H 1.09001 * 109.46859 * 173.54950 * 20 18 17 48 48 H 1.09003 * 109.47207 * 53.54871 * 20 18 17 49 49 H 1.09000 * 109.47300 * 59.99519 * 21 20 18 50 50 H 1.09003 * 109.46996 * 300.00202 * 21 20 18 51 51 H 0.97004 * 119.99320 * 359.72392 * 22 21 20 52 52 H 0.97005 * 119.99575 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4271 -1.2430 -0.7733 6 6 4.4478 -1.5614 -1.5940 7 8 5.5438 -1.8148 -1.1314 8 6 4.2360 -1.6027 -3.0497 9 6 3.0313 -1.4696 -3.7181 10 6 3.3465 -1.5790 -5.0743 11 7 4.6388 -1.7610 -5.1726 12 7 5.1898 -1.7740 -4.0124 13 6 6.6221 -1.9503 -3.7599 14 6 7.5181 -1.3881 -4.8762 15 6 8.4011 -2.6347 -4.6848 16 6 7.1482 -3.3434 -4.1437 17 6 3.4675 -1.2740 0.6960 18 6 2.0862 -0.8078 1.2022 19 1 1.4479 -1.6632 1.4239 20 6 2.2349 0.0876 2.4338 21 6 2.7848 -0.7361 3.6000 22 7 2.9279 0.1214 4.7791 23 6 3.4063 -0.4004 5.9513 24 1 3.6741 -1.4451 6.0078 25 6 3.5472 0.4135 7.0669 26 7 4.0076 -0.0879 8.1934 27 14 3.0847 2.2207 6.9690 28 1 1.6554 2.3865 7.3365 29 1 3.9309 2.9998 7.9082 30 1 3.3000 2.7125 5.5845 31 1 -0.3634 0.4520 0.9228 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1560 -0.1719 -2.0837 35 1 1.4520 -1.6703 -1.4024 36 1 2.0548 -1.3149 -3.2831 37 1 2.6479 -1.5234 -5.8960 38 1 6.9180 -1.6318 -2.7604 39 1 7.0285 -1.3451 -5.8491 40 1 8.0145 -0.4552 -4.6093 41 1 9.1847 -2.5027 -3.9387 42 1 8.7726 -3.0569 -5.6186 43 1 7.3465 -3.9866 -3.2863 44 1 6.5565 -3.8365 -4.9149 45 1 4.2426 -0.5996 1.0600 46 1 3.6662 -2.2883 1.0424 47 1 1.2618 0.4969 2.7051 48 1 2.9223 0.9032 2.2092 49 1 3.7579 -1.1455 3.3287 50 1 2.0975 -1.5518 3.8246 51 1 2.6877 1.0598 4.7282 52 1 4.1057 0.4808 8.9731 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104204193.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:06 Heat of formation + Delta-G solvation = 81.734555 kcal Electronic energy + Delta-G solvation = -30538.750705 eV Core-core repulsion = 26541.166863 eV Total energy + Delta-G solvation = -3997.583842 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.90342 -40.27106 -38.82825 -38.14210 -35.41420 -33.60016 -32.17756 -32.05806 -31.41978 -30.37555 -27.50908 -26.86948 -26.14422 -25.81387 -24.61227 -22.99870 -22.08188 -21.93609 -20.77058 -20.51774 -20.03586 -19.25283 -17.75466 -17.55670 -16.80312 -16.58057 -16.06856 -15.83744 -15.50170 -14.82890 -14.71774 -14.58700 -14.41149 -14.04890 -13.83068 -13.48621 -13.39737 -13.22801 -12.96768 -12.95966 -12.77326 -12.65125 -12.63215 -12.40147 -11.95945 -11.67887 -11.59354 -11.43594 -11.30071 -11.16776 -11.04215 -10.93126 -10.83715 -10.71383 -10.53729 -10.28005 -10.17463 -10.06969 -9.58113 -9.47837 -9.27215 -8.88699 -8.87279 -7.22534 -5.75906 -3.11494 0.99092 2.01901 2.33090 2.79022 2.94116 3.37425 3.39737 3.45294 3.91344 4.00533 4.07877 4.20738 4.33154 4.40209 4.46805 4.55229 4.56774 4.59683 4.82895 4.97603 5.05363 5.11782 5.15471 5.22024 5.23249 5.30707 5.32494 5.33198 5.40407 5.43517 5.46280 5.49863 5.53442 5.54480 5.59463 5.62298 5.74680 5.85112 5.89076 5.89927 5.92384 5.99408 6.08533 6.14739 6.23279 6.26698 6.48440 6.71817 6.75563 7.17104 7.73702 7.87669 8.00655 8.43166 9.22323 9.94613 10.14260 11.42592 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.002242 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.469189 B =12487.360839 C =13893.065787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.088 0.912 4 C 0.093 3.907 5 N -0.601 5.601 6 C 0.602 3.398 7 O -0.539 6.539 8 C -0.032 4.032 9 C -0.201 4.201 10 C -0.007 4.007 11 N -0.275 5.275 12 N -0.244 5.244 13 C 0.113 3.887 14 C -0.139 4.139 15 C -0.136 4.136 16 C -0.141 4.141 17 C 0.113 3.887 18 C -0.089 4.089 19 H 0.090 0.910 20 C -0.119 4.119 21 C 0.155 3.845 22 N -0.757 5.757 23 C -0.244 4.244 24 H 0.090 0.910 25 C 0.002 3.998 26 N -0.935 5.935 27 Si 0.886 3.114 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.168 0.832 37 H 0.186 0.814 38 H 0.147 0.853 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.064 0.936 49 H 0.027 0.973 50 H 0.027 0.973 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.787 -2.592 -31.694 31.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.106 0.894 4 C -0.030 4.030 5 N -0.334 5.334 6 C 0.390 3.610 7 O -0.417 6.417 8 C -0.160 4.160 9 C -0.230 4.230 10 C -0.183 4.183 11 N -0.108 5.108 12 N -0.031 5.031 13 C 0.013 3.987 14 C -0.177 4.177 15 C -0.174 4.174 16 C -0.179 4.179 17 C -0.009 4.009 18 C -0.108 4.108 19 H 0.109 0.891 20 C -0.158 4.158 21 C 0.028 3.972 22 N -0.403 5.403 23 C -0.374 4.374 24 H 0.108 0.892 25 C -0.193 4.193 26 N -0.583 5.583 27 Si 0.716 3.284 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.186 0.814 37 H 0.203 0.797 38 H 0.165 0.835 39 H 0.119 0.881 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.045 0.955 50 H 0.045 0.955 51 H 0.193 0.807 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.017 -3.097 -32.056 32.221 hybrid contribution -1.064 1.397 0.694 1.888 sum -2.081 -1.701 -31.362 31.476 Atomic orbital electron populations 1.21701 0.93359 1.02285 1.02497 1.22469 0.96495 0.99578 0.93639 0.89386 1.22888 0.83009 0.98612 0.98477 1.48068 1.12045 1.65859 1.07405 1.16505 0.83420 0.77532 0.83581 1.90792 1.23387 1.50508 1.76975 1.21351 0.90351 1.12909 0.91394 1.22724 0.98060 1.08315 0.93869 1.23590 0.91751 1.05820 0.97116 1.73080 1.10784 1.19585 1.07321 1.45821 1.07832 1.47737 1.01724 1.23788 0.72932 0.99483 1.02545 1.23354 0.96456 0.98755 0.99161 1.22728 0.96299 0.96207 1.02201 1.23339 0.97161 0.95394 1.01996 1.22195 0.98621 1.02617 0.77430 1.22289 0.94992 0.98938 0.94621 0.89149 1.21790 1.01898 0.98234 0.93838 1.20670 0.97705 0.93112 0.85755 1.42716 1.80179 1.08333 1.09060 1.19071 1.35188 0.96392 0.86702 0.89235 1.24693 1.01281 0.97658 0.95699 1.69709 1.51917 1.35178 1.01467 0.86522 0.78138 0.86685 0.77026 1.21083 1.21744 1.20361 0.91565 0.92358 0.92204 0.89544 0.90578 0.81442 0.79734 0.83526 0.88090 0.90358 0.89273 0.90138 0.90036 0.89097 0.90319 0.90714 0.91209 0.91702 0.95530 0.95487 0.80723 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.31 37.16 0.35 -0.59 16 2 C -0.10 -0.85 3.09 -88.47 -0.27 -1.12 16 3 H 0.09 0.77 8.05 -51.93 -0.42 0.36 16 4 C 0.09 0.74 4.59 -2.53 -0.01 0.73 16 5 N -0.60 -6.86 3.33 -171.89 -0.57 -7.44 16 6 C 0.60 8.02 7.82 -12.64 -0.10 7.92 16 7 O -0.54 -8.70 14.97 5.25 0.08 -8.62 16 8 C -0.03 -0.37 6.89 -82.06 -0.57 -0.94 16 9 C -0.20 -1.81 9.27 -38.98 -0.36 -2.17 16 10 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 11 N -0.28 -2.99 11.05 30.59 0.34 -2.65 16 12 N -0.24 -2.79 3.48 -49.90 -0.17 -2.97 16 13 C 0.11 1.15 4.25 -67.12 -0.29 0.87 16 14 C -0.14 -1.11 7.70 -25.83 -0.20 -1.31 16 15 C -0.14 -0.91 8.09 -25.83 -0.21 -1.12 16 16 C -0.14 -1.21 7.88 -25.92 -0.20 -1.41 16 17 C 0.11 1.40 5.62 -3.06 -0.02 1.38 16 18 C -0.09 -0.95 2.45 -88.79 -0.22 -1.17 16 19 H 0.09 0.92 8.04 -51.93 -0.42 0.50 16 20 C -0.12 -1.64 4.71 -26.73 -0.13 -1.76 16 21 C 0.15 2.88 6.11 -4.04 -0.02 2.86 16 22 N -0.76 -18.03 5.41 -59.91 -0.32 -18.36 16 23 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 24 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 25 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 26 N -0.93 -29.69 13.97 55.49 0.78 -28.91 16 27 Si 0.89 22.21 27.73 -169.99 -4.71 17.49 16 28 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 30 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16 34 H 0.09 0.59 5.92 -51.93 -0.31 0.29 16 35 H 0.08 0.50 7.62 -51.93 -0.40 0.11 16 36 H 0.17 1.06 4.99 -52.48 -0.26 0.80 16 37 H 0.19 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.15 1.71 6.09 -51.93 -0.32 1.39 16 39 H 0.10 0.85 7.54 -51.93 -0.39 0.46 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 1.11 7.76 -51.93 -0.40 0.71 16 46 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.06 0.91 8.06 -51.93 -0.42 0.50 16 49 H 0.03 0.51 7.49 -51.93 -0.39 0.13 16 50 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.36 8.31 5.53 -40.82 -0.23 8.08 16 52 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 407.46 15.07 6.14 6.14 Total: -1.00 -34.93 407.46 -9.77 -44.69 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -8.61 Total: 5.91 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.71 Total: -5.29 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.04 Total: -60.32 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.08 Total: -8.62 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.93 -9.77 -44.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104204193.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.429 kcal (2) G-P(sol) polarization free energy of solvation -34.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds