Wall clock time and date at job start Wed Apr 1 2020 04:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 110.28603 * 2 1 4 4 C 1.54004 * 110.32728 * 237.86596 * 2 1 3 5 5 N 1.47484 * 107.08005 * 242.31144 * 4 2 1 6 6 C 1.34781 * 127.03027 * 154.51714 * 5 4 2 7 7 O 1.21631 * 119.99855 * 185.81463 * 6 5 4 8 8 C 1.47160 * 119.99798 * 5.82130 * 6 5 4 9 9 C 1.38398 * 126.88832 * 6.57401 * 8 6 5 10 10 C 1.39675 * 105.36328 * 180.02562 * 9 8 6 11 11 C 1.50697 * 126.07136 * 180.02562 * 10 9 8 12 12 C 1.52995 * 117.49931 * 343.74524 * 11 10 9 13 13 C 1.53003 * 117.49738 * 275.08432 * 11 10 9 14 14 N 1.30870 * 107.85794 * 0.02562 * 10 9 8 15 15 N 1.28439 * 110.92647 * 359.97438 * 14 10 9 16 16 C 1.46502 * 125.18794 * 180.02562 * 15 14 10 17 17 C 1.48117 * 105.93391 * 334.77565 * 5 4 2 18 18 C 1.54596 * 103.41987 * 39.02848 * 17 5 4 19 19 H 1.08999 * 110.73157 * 81.24135 * 18 17 5 20 20 C 1.53006 * 110.83142 * 204.44294 * 18 17 5 21 21 C 1.52999 * 109.47125 * 288.56345 * 20 18 17 22 22 N 1.46496 * 109.46928 * 179.97438 * 21 20 18 23 23 C 1.36939 * 120.00005 * 179.97438 * 22 21 20 24 24 H 1.08004 * 120.00166 * 0.02562 * 23 22 21 25 25 C 1.38806 * 120.00176 * 180.02562 * 23 22 21 26 26 N 1.31621 * 120.00092 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00192 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47164 * 89.99629 * 27 25 23 29 29 H 1.48499 * 109.47239 * 209.99837 * 27 25 23 30 30 H 1.48499 * 109.47031 * 329.99836 * 27 25 23 31 31 H 1.08997 * 109.46964 * 180.68014 * 1 2 3 32 32 H 1.09005 * 109.46947 * 300.68344 * 1 2 3 33 33 H 1.09003 * 109.47017 * 60.68273 * 1 2 3 34 34 H 1.08999 * 109.91462 * 122.94795 * 4 2 1 35 35 H 1.09001 * 109.90838 * 1.67012 * 4 2 1 36 36 H 1.08004 * 127.32000 * 0.07219 * 9 8 6 37 37 H 1.09000 * 115.54764 * 129.42124 * 11 10 9 38 38 H 1.09001 * 117.50259 * 0.02562 * 12 11 10 39 39 H 1.09001 * 117.49690 * 145.02513 * 12 11 10 40 40 H 1.09003 * 117.49842 * 214.97544 * 13 11 10 41 41 H 1.08999 * 117.50053 * 359.97438 * 13 11 10 42 42 H 1.09004 * 109.47392 * 85.19707 * 16 15 14 43 43 H 1.08997 * 109.47330 * 205.19601 * 16 15 14 44 44 H 1.09002 * 109.47060 * 325.19691 * 16 15 14 45 45 H 1.08997 * 110.65648 * 157.51019 * 17 5 4 46 46 H 1.08996 * 110.66328 * 280.62948 * 17 5 4 47 47 H 1.08999 * 109.46805 * 48.56525 * 20 18 17 48 48 H 1.08993 * 109.46742 * 168.56120 * 20 18 17 49 49 H 1.09000 * 109.47077 * 300.00216 * 21 20 18 50 50 H 1.08995 * 109.47108 * 59.99889 * 21 20 18 51 51 H 0.97004 * 120.00233 * 0.02562 * 22 21 20 52 52 H 0.97003 * 120.00094 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2229 5 7 2.8298 -1.9203 -0.7102 6 6 3.0645 -3.0859 -1.3448 7 8 3.6241 -3.9943 -0.7607 8 6 2.6440 -3.2594 -2.7443 9 6 2.1162 -2.2902 -3.5794 10 6 1.8787 -2.9376 -4.7940 11 6 1.3035 -2.3090 -6.0370 12 6 0.5956 -0.9613 -5.8843 13 6 -0.2204 -2.2293 -6.1480 14 7 2.2444 -4.1871 -4.6610 15 7 2.6954 -4.4098 -3.4791 16 6 3.1897 -5.7005 -2.9935 17 6 3.2817 -1.5367 0.6473 18 6 2.0693 -0.7720 1.2263 19 1 1.3199 -1.4669 1.6051 20 6 2.5113 0.1968 2.3250 21 6 2.9217 -0.5949 3.5682 22 7 3.3455 0.3327 4.6199 23 6 3.7592 -0.1501 5.8328 24 1 3.7735 -1.2147 6.0139 25 6 4.1602 0.7288 6.8295 26 7 4.1434 2.0263 6.6087 27 14 4.7253 0.0702 8.4837 28 1 6.1907 -0.1669 8.4478 29 1 4.4099 1.0603 9.5446 30 1 4.0243 -1.2064 8.7739 31 1 -0.3633 -1.0276 0.0122 32 1 -0.3633 0.5244 0.8838 33 1 -0.3633 0.5032 -0.8961 34 1 2.7167 -0.1221 -1.8112 35 1 1.2333 -1.1173 -1.8349 36 1 1.9286 -1.2533 -3.3425 37 1 1.8667 -2.4806 -6.9543 38 1 0.5462 -0.5291 -4.8848 39 1 0.6926 -0.2464 -6.7013 40 1 -0.6597 -2.3480 -7.1384 41 1 -0.8069 -2.6320 -5.3222 42 1 4.2396 -5.8127 -3.2641 43 1 3.0874 -5.7442 -1.9092 44 1 2.6099 -6.5052 -3.4458 45 1 3.4981 -2.4222 1.2449 46 1 4.1541 -0.8856 0.5925 47 1 3.3590 0.7841 1.9720 48 1 1.6862 0.8636 2.5748 49 1 2.0741 -1.1822 3.9211 50 1 3.7469 -1.2617 3.3183 51 1 3.3324 1.2889 4.4575 52 1 4.4240 2.6404 7.3051 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104252867.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:11 Heat of formation + Delta-G solvation = 82.727953 kcal Electronic energy + Delta-G solvation = -30379.552439 eV Core-core repulsion = 26382.011674 eV Total energy + Delta-G solvation = -3997.540765 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.90104 -40.21493 -38.20825 -37.51104 -35.23821 -33.69646 -33.02252 -32.12514 -31.41749 -30.03652 -27.66170 -27.18165 -26.74091 -24.64934 -23.73896 -22.98307 -22.68435 -22.00612 -20.84672 -20.72171 -20.12551 -19.13163 -17.53234 -17.12677 -16.71100 -16.63294 -16.13690 -15.70096 -15.43540 -14.78189 -14.70953 -14.58486 -14.47562 -14.17541 -13.77062 -13.40294 -13.28754 -13.15789 -13.13246 -13.05995 -12.80324 -12.44504 -12.30908 -12.15673 -11.88492 -11.74113 -11.45557 -11.37631 -11.19128 -11.03465 -10.99324 -10.83025 -10.65751 -10.57589 -10.45221 -10.30681 -10.23210 -9.97509 -9.66340 -9.41786 -9.13993 -8.88005 -8.85845 -6.90959 -5.75677 -3.04134 0.97944 2.00415 2.16014 2.78059 2.92429 3.44673 3.44884 3.49789 3.51405 3.92993 4.08653 4.32555 4.44134 4.51578 4.56570 4.63193 4.64879 4.66115 4.86724 4.87848 4.93374 5.03882 5.14494 5.18791 5.24140 5.26371 5.28410 5.32654 5.41227 5.45516 5.50430 5.51674 5.58434 5.69784 5.72805 5.73667 5.76419 5.80675 5.83943 5.98407 6.01910 6.10911 6.14951 6.26170 6.36416 6.40440 6.40748 6.84213 6.87900 7.21766 7.70953 7.71578 7.85317 8.43636 9.54626 10.12830 10.47209 11.47297 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018550 B = 0.002038 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.095767 B =13734.992968 C =14923.115002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.091 0.909 4 C 0.093 3.907 5 N -0.604 5.604 6 C 0.607 3.393 7 O -0.541 6.541 8 C -0.029 4.029 9 C -0.190 4.190 10 C 0.053 3.947 11 C -0.074 4.074 12 C -0.166 4.166 13 C -0.167 4.167 14 N -0.271 5.271 15 N -0.256 5.256 16 C 0.084 3.916 17 C 0.111 3.889 18 C -0.091 4.091 19 H 0.085 0.915 20 C -0.114 4.114 21 C 0.151 3.849 22 N -0.734 5.734 23 C -0.238 4.238 24 H 0.070 0.930 25 C -0.016 4.016 26 N -0.934 5.934 27 Si 0.907 3.093 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.168 0.832 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.017 0.983 50 H 0.019 0.981 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.782 -7.268 -28.366 30.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.109 0.891 4 C -0.030 4.030 5 N -0.337 5.337 6 C 0.395 3.605 7 O -0.419 6.419 8 C -0.158 4.158 9 C -0.218 4.218 10 C -0.103 4.103 11 C -0.094 4.094 12 C -0.203 4.203 13 C -0.205 4.205 14 N -0.104 5.104 15 N -0.043 5.043 16 C -0.056 4.056 17 C -0.010 4.010 18 C -0.111 4.111 19 H 0.103 0.897 20 C -0.153 4.153 21 C 0.024 3.976 22 N -0.378 5.378 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.211 4.211 26 N -0.583 5.583 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.185 0.815 37 H 0.136 0.864 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.131 0.869 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.035 0.965 50 H 0.037 0.963 51 H 0.217 0.783 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.272 -9.151 -28.458 31.017 hybrid contribution 0.396 0.701 1.302 1.531 sum -7.876 -8.450 -27.156 29.511 Atomic orbital electron populations 1.21847 0.93946 1.02011 1.02242 1.22197 0.96574 0.99890 0.93597 0.89062 1.22660 0.95740 0.87273 0.97280 1.48385 1.52936 1.14183 1.18165 1.16415 0.79096 0.81447 0.83508 1.90802 1.43989 1.39654 1.67422 1.21302 1.10784 0.88673 0.95005 1.22463 1.05866 1.00533 0.92979 1.21010 1.04086 0.89770 0.95457 1.20024 0.94719 0.99985 0.94633 1.23020 1.03191 0.90515 1.03618 1.23009 0.92640 1.01470 1.03342 1.73088 1.15780 1.19612 1.01938 1.45562 1.42842 1.09308 1.06602 1.22397 1.00663 0.79835 1.02690 1.22674 0.97245 1.00187 0.80882 1.22294 0.96858 0.97398 0.94539 0.89698 1.21727 1.01380 0.97609 0.94544 1.20679 0.96403 0.92823 0.87727 1.42362 1.79068 1.05143 1.11239 1.19241 1.35613 0.92141 0.89942 0.91209 1.24745 1.02501 0.95340 0.98553 1.69659 1.54293 1.00689 1.33689 0.86185 0.78501 0.77615 0.83885 1.21720 1.21771 1.20770 0.92645 0.91693 0.92492 0.90888 0.89794 0.81488 0.86399 0.88326 0.87980 0.88241 0.88665 0.89597 0.86882 0.88937 0.89116 0.90092 0.91537 0.91263 0.96470 0.96347 0.78325 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.90 37.16 0.33 -0.81 16 2 C -0.10 -0.92 3.17 -89.24 -0.28 -1.20 16 3 H 0.09 0.77 7.85 -51.93 -0.41 0.36 16 4 C 0.09 0.79 4.89 -2.98 -0.01 0.78 16 5 N -0.60 -6.98 3.29 -171.34 -0.56 -7.55 16 6 C 0.61 8.04 7.85 -12.64 -0.10 7.94 16 7 O -0.54 -8.53 14.87 5.25 0.08 -8.45 16 8 C -0.03 -0.35 6.90 -82.06 -0.57 -0.91 16 9 C -0.19 -1.88 8.62 -38.99 -0.34 -2.22 16 10 C 0.05 0.54 6.85 -82.47 -0.57 -0.02 16 11 C -0.07 -0.56 6.33 -91.77 -0.58 -1.14 16 12 C -0.17 -0.91 10.03 -26.69 -0.27 -1.17 16 13 C -0.17 -1.03 10.24 -26.69 -0.27 -1.30 16 14 N -0.27 -3.20 11.90 33.64 0.40 -2.80 16 15 N -0.26 -2.97 3.75 -63.88 -0.24 -3.21 16 16 C 0.08 0.75 10.90 59.85 0.65 1.40 16 17 C 0.11 1.39 5.94 -2.31 -0.01 1.37 16 18 C -0.09 -1.06 2.58 -88.93 -0.23 -1.29 16 19 H 0.08 1.04 7.86 -51.93 -0.41 0.63 16 20 C -0.11 -1.67 4.70 -26.73 -0.13 -1.79 16 21 C 0.15 2.96 6.15 -4.04 -0.02 2.94 16 22 N -0.73 -18.59 5.60 -59.91 -0.34 -18.93 16 23 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 24 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 25 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 26 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 27 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 30 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 35 H 0.08 0.63 5.43 -51.93 -0.28 0.35 16 36 H 0.17 1.25 4.53 -52.48 -0.24 1.01 16 37 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 0.50 7.22 -51.93 -0.37 0.13 16 39 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.11 1.11 6.19 -51.93 -0.32 0.79 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.09 1.28 7.79 -51.93 -0.40 0.88 16 46 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 47 H 0.07 0.97 7.99 -51.93 -0.41 0.56 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.02 0.37 7.67 -51.93 -0.40 -0.03 16 51 H 0.38 10.11 7.67 -40.82 -0.31 9.79 16 52 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 414.58 15.07 6.25 6.25 Total: -1.00 -34.25 414.58 -9.93 -44.18 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.58 Total: 5.42 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -2.64 Total: -4.87 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.01 Total: -60.12 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.45 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.25 -9.93 -44.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104252867.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.909 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds