Wall clock time and date at job start Wed Apr 1 2020 04:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 110.28603 * 2 1 4 4 C 1.54004 * 110.32728 * 237.86596 * 2 1 3 5 5 N 1.47484 * 107.08005 * 242.31144 * 4 2 1 6 6 C 1.34781 * 127.03027 * 154.51714 * 5 4 2 7 7 O 1.21631 * 119.99855 * 185.81463 * 6 5 4 8 8 C 1.47160 * 119.99798 * 5.82130 * 6 5 4 9 9 C 1.38398 * 126.88832 * 6.57401 * 8 6 5 10 10 C 1.39675 * 105.36328 * 180.02562 * 9 8 6 11 11 C 1.50697 * 126.07136 * 180.02562 * 10 9 8 12 12 C 1.52995 * 117.49931 * 343.74524 * 11 10 9 13 13 C 1.53003 * 117.49738 * 275.08432 * 11 10 9 14 14 N 1.30870 * 107.85794 * 0.02562 * 10 9 8 15 15 N 1.28439 * 110.92647 * 359.97438 * 14 10 9 16 16 C 1.46502 * 125.18794 * 180.02562 * 15 14 10 17 17 C 1.48117 * 105.93391 * 334.77565 * 5 4 2 18 18 C 1.54596 * 103.41987 * 39.02848 * 17 5 4 19 19 H 1.08999 * 110.73157 * 81.24135 * 18 17 5 20 20 C 1.53006 * 110.83142 * 204.44294 * 18 17 5 21 21 C 1.52999 * 109.47125 * 288.56345 * 20 18 17 22 22 N 1.46496 * 109.46928 * 179.97438 * 21 20 18 23 23 C 1.36939 * 120.00005 * 179.97438 * 22 21 20 24 24 H 1.08004 * 120.00166 * 0.02562 * 23 22 21 25 25 C 1.38806 * 120.00176 * 180.02562 * 23 22 21 26 26 N 1.31621 * 120.00092 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00192 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47164 * 89.99629 * 27 25 23 29 29 H 1.48499 * 109.47239 * 209.99837 * 27 25 23 30 30 H 1.48499 * 109.47031 * 329.99836 * 27 25 23 31 31 H 1.08997 * 109.46964 * 180.68014 * 1 2 3 32 32 H 1.09005 * 109.46947 * 300.68344 * 1 2 3 33 33 H 1.09003 * 109.47017 * 60.68273 * 1 2 3 34 34 H 1.08999 * 109.91462 * 122.94795 * 4 2 1 35 35 H 1.09001 * 109.90838 * 1.67012 * 4 2 1 36 36 H 1.08004 * 127.32000 * 0.07219 * 9 8 6 37 37 H 1.09000 * 115.54764 * 129.42124 * 11 10 9 38 38 H 1.09001 * 117.50259 * 0.02562 * 12 11 10 39 39 H 1.09001 * 117.49690 * 145.02513 * 12 11 10 40 40 H 1.09003 * 117.49842 * 214.97544 * 13 11 10 41 41 H 1.08999 * 117.50053 * 359.97438 * 13 11 10 42 42 H 1.09004 * 109.47392 * 85.19707 * 16 15 14 43 43 H 1.08997 * 109.47330 * 205.19601 * 16 15 14 44 44 H 1.09002 * 109.47060 * 325.19691 * 16 15 14 45 45 H 1.08997 * 110.65648 * 157.51019 * 17 5 4 46 46 H 1.08996 * 110.66328 * 280.62948 * 17 5 4 47 47 H 1.08999 * 109.46805 * 48.56525 * 20 18 17 48 48 H 1.08993 * 109.46742 * 168.56120 * 20 18 17 49 49 H 1.09000 * 109.47077 * 300.00216 * 21 20 18 50 50 H 1.08995 * 109.47108 * 59.99889 * 21 20 18 51 51 H 0.97004 * 120.00233 * 0.02562 * 22 21 20 52 52 H 0.97003 * 120.00094 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2229 5 7 2.8298 -1.9203 -0.7102 6 6 3.0645 -3.0859 -1.3448 7 8 3.6241 -3.9943 -0.7607 8 6 2.6440 -3.2594 -2.7443 9 6 2.1162 -2.2902 -3.5794 10 6 1.8787 -2.9376 -4.7940 11 6 1.3035 -2.3090 -6.0370 12 6 0.5956 -0.9613 -5.8843 13 6 -0.2204 -2.2293 -6.1480 14 7 2.2444 -4.1871 -4.6610 15 7 2.6954 -4.4098 -3.4791 16 6 3.1897 -5.7005 -2.9935 17 6 3.2817 -1.5367 0.6473 18 6 2.0693 -0.7720 1.2263 19 1 1.3199 -1.4669 1.6051 20 6 2.5113 0.1968 2.3250 21 6 2.9217 -0.5949 3.5682 22 7 3.3455 0.3327 4.6199 23 6 3.7592 -0.1501 5.8328 24 1 3.7735 -1.2147 6.0139 25 6 4.1602 0.7288 6.8295 26 7 4.1434 2.0263 6.6087 27 14 4.7253 0.0702 8.4837 28 1 6.1907 -0.1669 8.4478 29 1 4.4099 1.0603 9.5446 30 1 4.0243 -1.2064 8.7739 31 1 -0.3633 -1.0276 0.0122 32 1 -0.3633 0.5244 0.8838 33 1 -0.3633 0.5032 -0.8961 34 1 2.7167 -0.1221 -1.8112 35 1 1.2333 -1.1173 -1.8349 36 1 1.9286 -1.2533 -3.3425 37 1 1.8667 -2.4806 -6.9543 38 1 0.5462 -0.5291 -4.8848 39 1 0.6926 -0.2464 -6.7013 40 1 -0.6597 -2.3480 -7.1384 41 1 -0.8069 -2.6320 -5.3222 42 1 4.2396 -5.8127 -3.2641 43 1 3.0874 -5.7442 -1.9092 44 1 2.6099 -6.5052 -3.4458 45 1 3.4981 -2.4222 1.2449 46 1 4.1541 -0.8856 0.5925 47 1 3.3590 0.7841 1.9720 48 1 1.6862 0.8636 2.5748 49 1 2.0741 -1.1822 3.9211 50 1 3.7469 -1.2617 3.3183 51 1 3.3324 1.2889 4.4575 52 1 4.4240 2.6404 7.3051 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104252867.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:09 Heat of formation + Delta-G solvation = 62.072969 kcal Electronic energy + Delta-G solvation = -30380.448106 eV Core-core repulsion = 26382.011674 eV Total energy + Delta-G solvation = -3998.436432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.69985 -41.15025 -39.19022 -38.04958 -36.90398 -34.88469 -33.92554 -33.44223 -32.42901 -31.50558 -28.61164 -28.29232 -27.48968 -26.10969 -24.71803 -24.06959 -23.41678 -22.92564 -21.94388 -21.60008 -21.05349 -19.88240 -19.16604 -18.39220 -17.55594 -17.53130 -16.97064 -16.64801 -16.48628 -16.32023 -15.66161 -15.47169 -15.26065 -15.21389 -15.12682 -14.95995 -14.58802 -14.24833 -14.04205 -13.82238 -13.55460 -13.48284 -13.17379 -12.99379 -12.90652 -12.88495 -12.66549 -12.40494 -12.29801 -12.25971 -12.15923 -12.06229 -11.86935 -11.58534 -11.53865 -11.49642 -11.30024 -11.19890 -11.11752 -10.92639 -10.28278 -9.91072 -9.74095 -9.00156 -7.96359 -5.24864 0.10520 1.20047 1.41309 1.46395 1.47989 1.56471 1.92754 1.99195 2.55092 2.94727 3.14348 3.37023 3.40163 3.52145 3.60974 3.75618 3.87634 4.04396 4.08656 4.14692 4.17490 4.22010 4.25379 4.28104 4.37753 4.45331 4.47644 4.50863 4.55774 4.57065 4.65395 4.68613 4.74921 4.80341 4.87131 4.89015 4.91664 5.00268 5.08087 5.09581 5.18757 5.25973 5.30943 5.35416 5.38399 5.42226 5.42937 5.49171 5.55639 5.63259 6.26976 6.29947 6.79653 6.99741 7.33052 8.09615 8.33132 9.26977 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018550 B = 0.002038 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.095767 B =13734.992968 C =14923.115002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.105 0.895 4 C 0.091 3.909 5 N -0.602 5.602 6 C 0.602 3.398 7 O -0.578 6.578 8 C -0.050 4.050 9 C -0.177 4.177 10 C 0.049 3.951 11 C -0.094 4.094 12 C -0.150 4.150 13 C -0.166 4.166 14 N -0.291 5.291 15 N -0.267 5.267 16 C 0.082 3.918 17 C 0.111 3.889 18 C -0.082 4.082 19 H 0.078 0.922 20 C -0.098 4.098 21 C 0.148 3.852 22 N -0.747 5.747 23 C -0.248 4.248 24 H 0.071 0.929 25 C -0.075 4.075 26 N -0.967 5.967 27 Si 0.972 3.028 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.272 1.272 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.194 0.806 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.111 0.889 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.013 0.987 50 H 0.015 0.985 51 H 0.376 0.624 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.877 -6.314 -30.191 32.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.123 0.877 4 C -0.030 4.030 5 N -0.333 5.333 6 C 0.391 3.609 7 O -0.459 6.459 8 C -0.178 4.178 9 C -0.206 4.206 10 C -0.107 4.107 11 C -0.114 4.114 12 C -0.187 4.187 13 C -0.204 4.204 14 N -0.125 5.125 15 N -0.054 5.054 16 C -0.058 4.058 17 C -0.011 4.011 18 C -0.102 4.102 19 H 0.096 0.904 20 C -0.136 4.136 21 C 0.022 3.978 22 N -0.389 5.389 23 C -0.380 4.380 24 H 0.089 0.911 25 C -0.268 4.268 26 N -0.618 5.618 27 Si 0.801 3.199 28 H -0.214 1.214 29 H -0.218 1.218 30 H -0.197 1.197 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.210 0.790 37 H 0.139 0.861 38 H 0.124 0.876 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.129 0.871 45 H 0.084 0.916 46 H 0.102 0.898 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.031 0.969 50 H 0.033 0.967 51 H 0.208 0.792 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.393 -8.210 -30.313 32.780 hybrid contribution 0.711 0.362 1.812 1.979 sum -8.682 -7.847 -28.501 30.810 Atomic orbital electron populations 1.21845 0.92956 1.01886 1.03172 1.22176 0.97303 1.00047 0.91801 0.87699 1.22910 0.96374 0.86363 0.97399 1.48415 1.52685 1.14549 1.17678 1.16674 0.78749 0.81386 0.84066 1.90776 1.45810 1.40989 1.68342 1.21299 1.12243 0.89671 0.94605 1.22773 1.04370 1.01209 0.92240 1.21528 1.03352 0.89327 0.96518 1.20151 0.95598 1.01953 0.93692 1.23163 1.00890 0.89899 1.04739 1.23059 0.91524 1.02021 1.03803 1.73081 1.16480 1.20774 1.02131 1.45785 1.43125 1.09843 1.06634 1.22475 1.01463 0.79825 1.02000 1.22584 0.97822 0.99275 0.81448 1.22138 0.96345 0.96886 0.94862 0.90401 1.21551 1.01517 0.97504 0.93042 1.20859 0.95851 0.92615 0.88479 1.42578 1.79089 1.05539 1.11730 1.19615 1.34840 0.92315 0.91209 0.91110 1.25559 1.03380 0.95685 1.02131 1.69801 1.55625 1.01724 1.34610 0.85159 0.77959 0.77242 0.79522 1.21402 1.21849 1.19672 0.93272 0.92385 0.90030 0.88557 0.88238 0.78960 0.86064 0.87564 0.86218 0.86939 0.89560 0.88911 0.88193 0.87064 0.91615 0.89794 0.91198 0.90953 0.96854 0.96686 0.79226 0.93904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.90 71.98 0.64 -1.19 16 2 C -0.09 -1.41 3.17 -9.90 -0.03 -1.44 16 3 H 0.10 1.37 7.85 -2.39 -0.02 1.35 16 4 C 0.09 1.27 4.89 86.53 0.42 1.69 16 5 N -0.60 -13.33 3.29 -814.25 -2.68 -16.01 16 6 C 0.60 15.98 7.85 86.59 0.68 16.66 16 7 O -0.58 -19.02 14.87 -4.13 -0.06 -19.09 16 8 C -0.05 -1.16 6.90 40.78 0.28 -0.88 16 9 C -0.18 -3.15 8.62 22.66 0.20 -2.95 16 10 C 0.05 0.92 6.85 43.05 0.30 1.22 16 11 C -0.09 -1.21 6.33 -11.54 -0.07 -1.29 16 12 C -0.15 -1.12 10.03 30.62 0.31 -0.81 16 13 C -0.17 -1.64 10.24 30.62 0.31 -1.32 16 14 N -0.29 -6.70 11.90 -47.49 -0.57 -7.27 16 15 N -0.27 -6.16 3.75 -356.02 -1.33 -7.49 16 16 C 0.08 1.50 10.90 127.77 1.39 2.89 16 17 C 0.11 2.73 5.94 86.61 0.51 3.24 16 18 C -0.08 -1.83 2.58 -9.70 -0.02 -1.86 16 19 H 0.08 1.87 7.86 -2.39 -0.02 1.85 16 20 C -0.10 -2.78 4.70 30.60 0.14 -2.64 16 21 C 0.15 5.86 6.15 86.38 0.53 6.39 16 22 N -0.75 -38.21 5.60 -343.47 -1.92 -40.14 16 23 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 24 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 25 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 26 N -0.97 -59.22 13.06 21.65 0.28 -58.93 16 27 Si 0.97 46.69 29.55 68.60 2.03 48.72 16 28 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 29 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 30 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.10 0.98 7.87 -2.39 -0.02 0.96 16 35 H 0.10 1.12 5.43 -2.39 -0.01 1.11 16 36 H 0.19 2.17 4.53 -2.91 -0.01 2.16 16 37 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.11 0.64 7.22 -2.39 -0.02 0.62 16 39 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 1.50 8.14 -2.38 -0.02 1.49 16 43 H 0.10 2.10 6.19 -2.39 -0.01 2.08 16 44 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.07 1.94 7.79 -2.39 -0.02 1.92 16 46 H 0.08 2.02 7.93 -2.39 -0.02 2.00 16 47 H 0.07 1.96 7.99 -2.39 -0.02 1.94 16 48 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.01 0.54 8.14 -2.39 -0.02 0.53 16 50 H 0.02 0.61 7.67 -2.39 -0.02 0.59 16 51 H 0.38 20.06 7.67 -92.71 -0.71 19.35 16 52 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -75.01 414.58 2.85 -72.16 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.21 Total: 27.54 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 6.90 Total: 0.51 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -6.22 Total: -129.84 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.06 Total: -19.09 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -75.01 2.85 -72.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104252867.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.231 kcal (2) G-P(sol) polarization free energy of solvation -75.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds