Wall clock time and date at job start Wed Apr 1 2020 04:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.64202 * 2 1 4 4 C 1.54322 * 110.71941 * 236.85888 * 2 1 3 5 5 N 1.47018 * 107.27336 * 219.26699 * 4 2 1 6 6 C 1.34780 * 125.64824 * 178.90717 * 5 4 2 7 7 O 1.21567 * 119.99652 * 180.02562 * 6 5 4 8 8 C 1.47708 * 120.00051 * 0.02562 * 6 5 4 9 9 C 1.41501 * 126.51564 * 179.71280 * 8 6 5 10 10 C 1.35368 * 105.50067 * 179.90120 * 9 8 6 11 11 C 1.50700 * 126.38456 * 180.08938 * 10 9 8 12 12 C 1.52995 * 117.50126 * 34.06509 * 11 10 9 13 13 C 1.53000 * 117.49894 * 325.40535 * 11 10 9 14 14 N 1.35032 * 107.22838 * 0.35996 * 10 9 8 15 15 C 1.46504 * 124.88543 * 179.76610 * 14 10 9 16 16 N 1.28470 * 110.23389 * 359.75929 * 14 10 9 17 17 C 1.47426 * 108.70104 * 358.94171 * 5 4 2 18 18 C 1.54909 * 104.83381 * 24.12870 * 17 5 4 19 19 H 1.08997 * 111.00194 * 81.06198 * 18 17 5 20 20 C 1.53003 * 111.00221 * 204.91626 * 18 17 5 21 21 C 1.52990 * 109.47216 * 287.19719 * 20 18 17 22 22 N 1.46504 * 109.47257 * 180.02562 * 21 20 18 23 23 C 1.36941 * 120.00132 * 179.97438 * 22 21 20 24 24 H 1.08002 * 120.00064 * 359.97438 * 23 22 21 25 25 C 1.38804 * 119.99810 * 179.97438 * 23 22 21 26 26 N 1.31622 * 120.00541 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00209 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.47043 * 60.00284 * 27 25 23 29 29 H 1.48498 * 109.47808 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46989 * 300.00620 * 27 25 23 31 31 H 1.09004 * 109.47208 * 179.30358 * 1 2 3 32 32 H 1.09004 * 109.46995 * 299.29920 * 1 2 3 33 33 H 1.08998 * 109.47298 * 59.29464 * 1 2 3 34 34 H 1.08998 * 109.88021 * 338.68403 * 4 2 1 35 35 H 1.09004 * 109.88163 * 99.84820 * 4 2 1 36 36 H 1.07993 * 127.25046 * 0.02562 * 9 8 6 37 37 H 1.09005 * 115.55137 * 179.74045 * 11 10 9 38 38 H 1.09004 * 117.49768 * 0.02562 * 12 11 10 39 39 H 1.09000 * 117.50288 * 145.02341 * 12 11 10 40 40 H 1.09001 * 117.50213 * 214.98139 * 13 11 10 41 41 H 1.09005 * 117.49592 * 359.97438 * 13 11 10 42 42 H 1.09003 * 109.46434 * 270.02391 * 15 14 10 43 43 H 1.08996 * 109.46754 * 30.01630 * 15 14 10 44 44 H 1.08998 * 109.47108 * 150.02416 * 15 14 10 45 45 H 1.08998 * 110.36876 * 142.97187 * 17 5 4 46 46 H 1.09003 * 110.36123 * 265.28869 * 17 5 4 47 47 H 1.08999 * 109.46712 * 47.20043 * 20 18 17 48 48 H 1.08996 * 109.46823 * 167.19175 * 20 18 17 49 49 H 1.09010 * 109.47116 * 299.99928 * 21 20 18 50 50 H 1.08996 * 109.47668 * 59.99974 * 21 20 18 51 51 H 0.97000 * 119.99409 * 359.97438 * 22 21 20 52 52 H 0.96991 * 120.00447 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 -1.2086 5 7 3.2470 -1.5461 -0.7427 6 6 3.9948 -2.3778 -1.4949 7 8 4.9448 -2.9543 -1.0020 8 6 3.6601 -2.5885 -2.9180 9 6 4.3500 -3.4209 -3.8309 10 6 3.6864 -3.2989 -5.0045 11 6 4.0258 -3.9907 -6.2995 12 6 4.6073 -5.4033 -6.2146 13 6 5.5058 -4.2278 -6.6070 14 7 2.6671 -2.4372 -4.7998 15 6 1.7020 -2.0232 -5.8213 16 7 2.6653 -2.0326 -3.5805 17 6 3.4673 -1.2456 0.6836 18 6 2.0828 -0.7949 1.2124 19 1 1.4514 -1.6547 1.4365 20 6 2.2314 0.1081 2.4386 21 6 2.6585 -0.7333 3.6428 22 7 2.8002 0.1313 4.8171 23 6 3.1765 -0.4040 6.0201 24 1 3.3683 -1.4635 6.1033 25 6 3.3113 0.4153 7.1324 26 7 3.0770 1.7065 7.0311 27 14 3.8238 -0.3148 8.7736 28 1 5.1568 -0.9550 8.6360 29 1 3.8943 0.7617 9.7941 30 1 2.8275 -1.3319 9.1957 31 1 -0.3634 -1.0276 -0.0125 32 1 -0.3633 0.5029 0.8962 33 1 -0.3634 0.5247 -0.8836 34 1 1.3140 -1.4753 -1.5781 35 1 2.3711 -0.0991 -1.9991 36 1 5.2213 -4.0275 -3.6327 37 1 3.3670 -3.7673 -7.1387 38 1 4.7440 -5.8325 -5.2220 39 1 4.3314 -6.1092 -6.9980 40 1 5.8205 -4.1608 -7.6485 41 1 6.2339 -3.8830 -5.8728 42 1 2.0741 -1.1363 -6.3344 43 1 1.5671 -2.8299 -6.5418 44 1 0.7471 -1.7952 -5.3478 45 1 3.8031 -2.1379 1.2119 46 1 4.1955 -0.4419 0.7938 47 1 2.9869 0.8685 2.2403 48 1 1.2777 0.5906 2.6522 49 1 1.9029 -1.4937 3.8411 50 1 3.6122 -1.2158 3.4293 51 1 2.6275 1.0829 4.7423 52 1 3.1709 2.2790 7.8085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104267975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:15 Heat of formation + Delta-G solvation = 78.214043 kcal Electronic energy + Delta-G solvation = -29965.749703 eV Core-core repulsion = 25968.013200 eV Total energy + Delta-G solvation = -3997.736503 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.02466 -40.00020 -37.92263 -37.69563 -35.07415 -33.88851 -33.13778 -31.97285 -30.77555 -30.12689 -28.24482 -26.82768 -26.40135 -24.48765 -23.80717 -22.89828 -22.89142 -21.98250 -20.76854 -20.35540 -20.03360 -19.14582 -17.65673 -17.05989 -16.72491 -16.65144 -16.05789 -15.52582 -15.22345 -14.81914 -14.60143 -14.52008 -14.24509 -14.14820 -13.74721 -13.35774 -13.20148 -13.12237 -13.05943 -12.96847 -12.76257 -12.44142 -12.29115 -12.21146 -12.07142 -11.64313 -11.53648 -11.37903 -11.30001 -11.05505 -10.95105 -10.83196 -10.76005 -10.54461 -10.36954 -10.19754 -10.10338 -9.90263 -9.59275 -9.37974 -9.08411 -8.79468 -8.59060 -6.84603 -5.69797 -2.97995 1.34514 1.73498 2.07072 2.95036 3.30977 3.44526 3.49698 3.53401 3.54912 3.82271 4.02169 4.29370 4.35898 4.43990 4.46398 4.52456 4.59235 4.62714 4.72827 4.80920 4.85814 5.01900 5.13942 5.14929 5.26399 5.36999 5.38212 5.42521 5.44126 5.56719 5.58725 5.60935 5.62471 5.68917 5.74098 5.86845 5.87784 5.97015 6.05703 6.08083 6.09044 6.21759 6.29947 6.37153 6.41256 6.45392 6.52462 6.93148 6.97030 7.46696 7.61825 7.76711 8.15668 8.49581 9.60349 10.19237 10.53853 11.53202 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020531 B = 0.001864 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.452062 B =15021.565308 C =16120.563604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.086 0.914 4 C 0.117 3.883 5 N -0.606 5.606 6 C 0.614 3.386 7 O -0.533 6.533 8 C -0.006 4.006 9 C -0.177 4.177 10 C 0.045 3.955 11 C -0.099 4.099 12 C -0.162 4.162 13 C -0.161 4.161 14 N -0.282 5.282 15 C 0.086 3.914 16 N -0.255 5.255 17 C 0.111 3.889 18 C -0.090 4.090 19 H 0.086 0.914 20 C -0.113 4.113 21 C 0.151 3.849 22 N -0.734 5.734 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.016 4.016 26 N -0.935 5.935 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.160 0.840 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.017 0.983 50 H 0.020 0.980 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 -8.814 -35.429 36.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 H 0.104 0.896 4 C -0.006 4.006 5 N -0.339 5.339 6 C 0.401 3.599 7 O -0.408 6.408 8 C -0.166 4.166 9 C -0.205 4.205 10 C -0.079 4.079 11 C -0.119 4.119 12 C -0.199 4.199 13 C -0.199 4.199 14 N -0.070 5.070 15 C -0.055 4.055 16 N -0.090 5.090 17 C -0.011 4.011 18 C -0.109 4.109 19 H 0.104 0.896 20 C -0.151 4.151 21 C 0.024 3.976 22 N -0.378 5.378 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.212 4.212 26 N -0.584 5.584 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.177 0.823 37 H 0.133 0.867 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.035 0.965 50 H 0.037 0.963 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.579 -8.493 -35.030 36.335 hybrid contribution 0.740 -0.461 0.692 1.113 sum -3.839 -8.954 -34.339 35.694 Atomic orbital electron populations 1.21723 0.93780 1.02026 1.02114 1.22331 0.96422 0.99600 0.93892 0.89565 1.22128 0.87324 0.94666 0.96490 1.48299 1.29943 1.43913 1.11733 1.16481 0.81854 0.78660 0.82914 1.90813 1.28619 1.49084 1.72326 1.21785 0.96925 1.02468 0.95397 1.21380 1.03546 1.04776 0.90772 1.20408 0.92726 0.98214 0.96539 1.20279 0.98401 0.99575 0.93654 1.23120 1.02739 0.90104 1.03963 1.23119 0.91676 1.02020 1.03077 1.45278 1.22416 1.31627 1.07675 1.22157 0.92104 1.02077 0.89122 1.73689 1.21851 1.21690 0.91767 1.22451 0.97705 1.01617 0.79313 1.22426 0.95271 0.98831 0.94405 0.89607 1.21674 1.02093 0.97997 0.93374 1.20685 0.97299 0.93156 0.86498 1.42359 1.82907 1.07306 1.05218 1.19211 1.37804 0.93016 0.86842 0.91249 1.24736 1.02773 0.95556 0.98092 1.69649 1.56067 1.03073 1.29632 0.86259 0.78455 0.77660 0.83783 1.21264 1.21720 1.21322 0.92541 0.91670 0.92640 0.90995 0.91339 0.82270 0.86675 0.87875 0.87949 0.87953 0.87888 0.89675 0.88797 0.88359 0.89867 0.90803 0.91616 0.91300 0.96466 0.96259 0.78346 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.15 37.16 0.34 -0.98 16 2 C -0.10 -1.14 3.01 -88.79 -0.27 -1.40 16 3 H 0.09 0.94 8.04 -51.93 -0.42 0.52 16 4 C 0.12 1.34 5.13 -3.07 -0.02 1.32 16 5 N -0.61 -8.60 3.33 -171.68 -0.57 -9.17 16 6 C 0.61 9.66 7.86 -12.39 -0.10 9.56 16 7 O -0.53 -10.00 17.18 5.31 0.09 -9.91 16 8 C -0.01 -0.08 6.98 -82.77 -0.58 -0.66 16 9 C -0.18 -2.01 9.86 -39.36 -0.39 -2.39 16 10 C 0.04 0.39 6.60 -82.21 -0.54 -0.15 16 11 C -0.10 -0.54 5.94 -91.77 -0.54 -1.08 16 12 C -0.16 -0.78 10.05 -26.70 -0.27 -1.05 16 13 C -0.16 -0.78 10.06 -26.70 -0.27 -1.05 16 14 N -0.28 -2.43 3.70 -63.85 -0.24 -2.67 16 15 C 0.09 0.32 11.05 59.85 0.66 0.98 16 16 N -0.25 -2.90 9.50 33.42 0.32 -2.58 16 17 C 0.11 1.62 5.86 -2.53 -0.01 1.61 16 18 C -0.09 -1.19 2.46 -88.47 -0.22 -1.41 16 19 H 0.09 1.15 8.05 -51.93 -0.42 0.74 16 20 C -0.11 -1.81 4.84 -26.73 -0.13 -1.94 16 21 C 0.15 3.13 6.16 -4.04 -0.02 3.10 16 22 N -0.73 -19.25 5.60 -59.91 -0.34 -19.58 16 23 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 24 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 25 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 26 N -0.94 -28.94 13.06 55.49 0.72 -28.22 16 27 Si 0.91 23.07 29.55 -169.99 -5.02 18.04 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 30 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 31 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.81 7.32 -51.93 -0.38 0.43 16 35 H 0.07 0.77 7.77 -51.93 -0.40 0.36 16 36 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.12 0.38 7.17 -51.93 -0.37 0.00 16 38 H 0.10 0.59 7.95 -51.93 -0.41 0.18 16 39 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 0.59 7.96 -51.93 -0.41 0.18 16 42 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.09 0.13 7.12 -51.93 -0.37 -0.24 16 44 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.08 1.33 8.04 -51.93 -0.42 0.91 16 46 H 0.07 1.11 7.91 -51.93 -0.41 0.70 16 47 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 48 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 50 H 0.02 0.41 7.75 -51.93 -0.40 0.01 16 51 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 52 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 421.88 15.07 6.36 6.36 Total: -1.00 -36.07 421.88 -10.19 -46.26 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -8.92 Total: 4.61 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -2.60 Total: -3.15 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -0.10 Total: -62.22 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -36.07 -10.19 -46.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104267975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.473 kcal (2) G-P(sol) polarization free energy of solvation -36.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds