Wall clock time and date at job start Wed Apr 1 2020 04:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.64202 * 2 1 4 4 C 1.54322 * 110.71941 * 236.85888 * 2 1 3 5 5 N 1.47018 * 107.27336 * 219.26699 * 4 2 1 6 6 C 1.34780 * 125.64824 * 178.90717 * 5 4 2 7 7 O 1.21567 * 119.99652 * 180.02562 * 6 5 4 8 8 C 1.47708 * 120.00051 * 0.02562 * 6 5 4 9 9 C 1.41501 * 126.51564 * 179.71280 * 8 6 5 10 10 C 1.35368 * 105.50067 * 179.90120 * 9 8 6 11 11 C 1.50700 * 126.38456 * 180.08938 * 10 9 8 12 12 C 1.52995 * 117.50126 * 34.06509 * 11 10 9 13 13 C 1.53000 * 117.49894 * 325.40535 * 11 10 9 14 14 N 1.35032 * 107.22838 * 0.35996 * 10 9 8 15 15 C 1.46504 * 124.88543 * 179.76610 * 14 10 9 16 16 N 1.28470 * 110.23389 * 359.75929 * 14 10 9 17 17 C 1.47426 * 108.70104 * 358.94171 * 5 4 2 18 18 C 1.54909 * 104.83381 * 24.12870 * 17 5 4 19 19 H 1.08997 * 111.00194 * 81.06198 * 18 17 5 20 20 C 1.53003 * 111.00221 * 204.91626 * 18 17 5 21 21 C 1.52990 * 109.47216 * 287.19719 * 20 18 17 22 22 N 1.46504 * 109.47257 * 180.02562 * 21 20 18 23 23 C 1.36941 * 120.00132 * 179.97438 * 22 21 20 24 24 H 1.08002 * 120.00064 * 359.97438 * 23 22 21 25 25 C 1.38804 * 119.99810 * 179.97438 * 23 22 21 26 26 N 1.31622 * 120.00541 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00209 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.47043 * 60.00284 * 27 25 23 29 29 H 1.48498 * 109.47808 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46989 * 300.00620 * 27 25 23 31 31 H 1.09004 * 109.47208 * 179.30358 * 1 2 3 32 32 H 1.09004 * 109.46995 * 299.29920 * 1 2 3 33 33 H 1.08998 * 109.47298 * 59.29464 * 1 2 3 34 34 H 1.08998 * 109.88021 * 338.68403 * 4 2 1 35 35 H 1.09004 * 109.88163 * 99.84820 * 4 2 1 36 36 H 1.07993 * 127.25046 * 0.02562 * 9 8 6 37 37 H 1.09005 * 115.55137 * 179.74045 * 11 10 9 38 38 H 1.09004 * 117.49768 * 0.02562 * 12 11 10 39 39 H 1.09000 * 117.50288 * 145.02341 * 12 11 10 40 40 H 1.09001 * 117.50213 * 214.98139 * 13 11 10 41 41 H 1.09005 * 117.49592 * 359.97438 * 13 11 10 42 42 H 1.09003 * 109.46434 * 270.02391 * 15 14 10 43 43 H 1.08996 * 109.46754 * 30.01630 * 15 14 10 44 44 H 1.08998 * 109.47108 * 150.02416 * 15 14 10 45 45 H 1.08998 * 110.36876 * 142.97187 * 17 5 4 46 46 H 1.09003 * 110.36123 * 265.28869 * 17 5 4 47 47 H 1.08999 * 109.46712 * 47.20043 * 20 18 17 48 48 H 1.08996 * 109.46823 * 167.19175 * 20 18 17 49 49 H 1.09010 * 109.47116 * 299.99928 * 21 20 18 50 50 H 1.08996 * 109.47668 * 59.99974 * 21 20 18 51 51 H 0.97000 * 119.99409 * 359.97438 * 22 21 20 52 52 H 0.96991 * 120.00447 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 -1.2086 5 7 3.2470 -1.5461 -0.7427 6 6 3.9948 -2.3778 -1.4949 7 8 4.9448 -2.9543 -1.0020 8 6 3.6601 -2.5885 -2.9180 9 6 4.3500 -3.4209 -3.8309 10 6 3.6864 -3.2989 -5.0045 11 6 4.0258 -3.9907 -6.2995 12 6 4.6073 -5.4033 -6.2146 13 6 5.5058 -4.2278 -6.6070 14 7 2.6671 -2.4372 -4.7998 15 6 1.7020 -2.0232 -5.8213 16 7 2.6653 -2.0326 -3.5805 17 6 3.4673 -1.2456 0.6836 18 6 2.0828 -0.7949 1.2124 19 1 1.4514 -1.6547 1.4365 20 6 2.2314 0.1081 2.4386 21 6 2.6585 -0.7333 3.6428 22 7 2.8002 0.1313 4.8171 23 6 3.1765 -0.4040 6.0201 24 1 3.3683 -1.4635 6.1033 25 6 3.3113 0.4153 7.1324 26 7 3.0770 1.7065 7.0311 27 14 3.8238 -0.3148 8.7736 28 1 5.1568 -0.9550 8.6360 29 1 3.8943 0.7617 9.7941 30 1 2.8275 -1.3319 9.1957 31 1 -0.3634 -1.0276 -0.0125 32 1 -0.3633 0.5029 0.8962 33 1 -0.3634 0.5247 -0.8836 34 1 1.3140 -1.4753 -1.5781 35 1 2.3711 -0.0991 -1.9991 36 1 5.2213 -4.0275 -3.6327 37 1 3.3670 -3.7673 -7.1387 38 1 4.7440 -5.8325 -5.2220 39 1 4.3314 -6.1092 -6.9980 40 1 5.8205 -4.1608 -7.6485 41 1 6.2339 -3.8830 -5.8728 42 1 2.0741 -1.1363 -6.3344 43 1 1.5671 -2.8299 -6.5418 44 1 0.7471 -1.7952 -5.3478 45 1 3.8031 -2.1379 1.2119 46 1 4.1955 -0.4419 0.7938 47 1 2.9869 0.8685 2.2403 48 1 1.2777 0.5906 2.6522 49 1 1.9029 -1.4937 3.8411 50 1 3.6122 -1.2158 3.4293 51 1 2.6275 1.0829 4.7423 52 1 3.1709 2.2790 7.8085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104267975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:14 Heat of formation + Delta-G solvation = 55.850308 kcal Electronic energy + Delta-G solvation = -29966.719467 eV Core-core repulsion = 25968.013200 eV Total energy + Delta-G solvation = -3998.706267 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.78369 -41.13658 -39.11815 -38.13667 -36.87842 -34.84705 -34.32082 -33.46023 -31.88024 -31.40118 -29.30416 -27.96483 -27.30876 -26.01640 -24.61625 -24.18906 -23.24450 -23.23413 -21.96090 -21.26383 -21.09228 -20.05274 -19.15633 -18.38338 -17.66008 -17.48002 -17.11469 -16.66398 -16.36511 -15.97750 -15.76941 -15.43553 -15.38547 -15.28274 -15.02230 -14.75615 -14.55369 -14.26592 -13.99943 -13.62277 -13.58255 -13.45669 -13.33104 -13.09741 -12.85934 -12.83309 -12.62908 -12.51744 -12.41494 -12.29608 -12.17186 -12.04595 -12.02099 -11.88135 -11.63761 -11.58312 -11.39052 -11.27771 -11.19371 -10.91828 -10.19061 -9.77589 -9.72046 -9.00508 -7.95838 -5.24831 0.43225 0.94282 1.45690 1.46111 1.49665 1.55797 1.91170 2.23815 2.55537 3.02352 3.11484 3.37097 3.41899 3.46265 3.52041 3.69355 3.80260 3.97603 4.07080 4.10933 4.12055 4.23033 4.28103 4.37500 4.39831 4.43826 4.47731 4.53447 4.60558 4.65710 4.67008 4.69115 4.72147 4.78404 4.81622 4.87297 4.91348 5.01791 5.02448 5.10350 5.15800 5.19920 5.25799 5.26360 5.30061 5.35854 5.42313 5.48560 5.51350 5.79255 6.26870 6.35912 6.75255 7.02526 7.32862 8.08925 8.33125 9.27361 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020531 B = 0.001864 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.452062 B =15021.565308 C =16120.563604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.092 0.908 4 C 0.123 3.877 5 N -0.606 5.606 6 C 0.607 3.393 7 O -0.580 6.580 8 C -0.039 4.039 9 C -0.203 4.203 10 C 0.058 3.942 11 C -0.102 4.102 12 C -0.161 4.161 13 C -0.161 4.161 14 N -0.272 5.272 15 C 0.071 3.929 16 N -0.257 5.257 17 C 0.109 3.891 18 C -0.079 4.079 19 H 0.088 0.912 20 C -0.097 4.097 21 C 0.149 3.851 22 N -0.746 5.746 23 C -0.250 4.250 24 H 0.072 0.928 25 C -0.075 4.075 26 N -0.968 5.968 27 Si 0.975 3.025 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.277 1.277 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.086 0.914 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.124 0.876 44 H 0.107 0.893 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.019 0.981 50 H 0.013 0.987 51 H 0.375 0.625 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.883 -9.128 -38.392 39.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.110 0.890 4 C 0.001 3.999 5 N -0.338 5.338 6 C 0.395 3.605 7 O -0.459 6.459 8 C -0.197 4.197 9 C -0.231 4.231 10 C -0.066 4.066 11 C -0.122 4.122 12 C -0.198 4.198 13 C -0.198 4.198 14 N -0.061 5.061 15 C -0.067 4.067 16 N -0.094 5.094 17 C -0.013 4.013 18 C -0.098 4.098 19 H 0.106 0.894 20 C -0.135 4.135 21 C 0.023 3.977 22 N -0.389 5.389 23 C -0.382 4.382 24 H 0.090 0.910 25 C -0.267 4.267 26 N -0.618 5.618 27 Si 0.803 3.197 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.203 1.203 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.104 0.896 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.104 0.896 42 H 0.121 0.879 43 H 0.142 0.858 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.094 0.906 49 H 0.037 0.963 50 H 0.031 0.969 51 H 0.207 0.793 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.309 -8.814 -38.029 39.544 hybrid contribution 1.251 -0.395 1.478 1.976 sum -5.057 -9.210 -36.551 38.032 Atomic orbital electron populations 1.21709 0.92024 1.02510 1.03001 1.22313 0.97729 0.99260 0.91909 0.88963 1.22223 0.86355 0.94597 0.96753 1.48390 1.30421 1.43679 1.11315 1.16929 0.81327 0.78170 0.84058 1.90762 1.30615 1.50958 1.73526 1.21513 0.98884 1.04733 0.94544 1.21471 1.04235 1.05499 0.91895 1.20789 0.91678 0.97250 0.96916 1.20516 0.99345 0.99526 0.92784 1.23176 1.02520 0.90255 1.03866 1.23174 0.91011 1.01769 1.03865 1.45795 1.22528 1.30342 1.07424 1.22672 0.91398 1.04059 0.88536 1.73596 1.21124 1.21688 0.92984 1.22376 0.98480 1.00460 0.80008 1.22278 0.94558 0.98760 0.94232 0.89382 1.21494 1.02100 0.97550 0.92356 1.20845 0.97002 0.93269 0.86610 1.42566 1.82798 1.07492 1.06060 1.19604 1.37203 0.93292 0.88133 0.91039 1.25581 1.03444 0.96040 1.01680 1.69802 1.57395 1.04254 1.30368 0.85200 0.78273 0.76940 0.79279 1.20615 1.21751 1.20305 0.92322 0.91963 0.90546 0.90257 0.90589 0.83071 0.83421 0.89579 0.85709 0.85733 0.89600 0.87873 0.85775 0.87488 0.91998 0.91474 0.91849 0.90571 0.96329 0.96917 0.79290 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.15 71.98 0.66 -1.56 16 2 C -0.09 -1.91 3.01 -9.61 -0.03 -1.93 16 3 H 0.09 1.83 8.04 -2.39 -0.02 1.81 16 4 C 0.12 2.69 5.13 86.73 0.45 3.13 16 5 N -0.61 -17.73 3.33 -815.35 -2.71 -20.44 16 6 C 0.61 20.23 7.86 86.75 0.68 20.91 16 7 O -0.58 -23.55 17.18 -3.93 -0.07 -23.62 16 8 C -0.04 -1.07 6.98 42.46 0.30 -0.78 16 9 C -0.20 -4.79 9.86 22.41 0.22 -4.57 16 10 C 0.06 0.94 6.60 41.40 0.27 1.21 16 11 C -0.10 -0.83 5.94 -11.54 -0.07 -0.90 16 12 C -0.16 -1.25 10.05 30.62 0.31 -0.94 16 13 C -0.16 -1.26 10.06 30.62 0.31 -0.95 16 14 N -0.27 -4.12 3.70 -355.92 -1.32 -5.43 16 15 C 0.07 0.26 11.05 127.77 1.41 1.67 16 16 N -0.26 -5.61 9.50 -48.18 -0.46 -6.06 16 17 C 0.11 3.34 5.86 86.85 0.51 3.84 16 18 C -0.08 -2.07 2.46 -9.40 -0.02 -2.10 16 19 H 0.09 2.32 8.05 -2.39 -0.02 2.30 16 20 C -0.10 -3.09 4.84 30.59 0.15 -2.94 16 21 C 0.15 6.27 6.16 86.38 0.53 6.80 16 22 N -0.75 -39.80 5.60 -343.45 -1.92 -41.73 16 23 C -0.25 -14.71 9.99 84.03 0.84 -13.87 16 24 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 25 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 26 N -0.97 -60.62 13.06 21.65 0.28 -60.33 16 27 Si 0.97 47.72 29.55 68.60 2.03 49.74 16 28 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 29 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 30 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 31 H 0.06 0.95 8.12 -2.38 -0.02 0.93 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.65 7.32 -2.39 -0.02 1.64 16 35 H 0.08 1.59 7.77 -2.38 -0.02 1.57 16 36 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 37 H 0.15 0.26 7.17 -2.38 -0.02 0.24 16 38 H 0.09 0.98 7.95 -2.39 -0.02 0.96 16 39 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.09 0.98 7.96 -2.38 -0.02 0.96 16 42 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.12 -0.26 7.12 -2.39 -0.02 -0.28 16 44 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.06 2.13 8.04 -2.39 -0.02 2.12 16 46 H 0.07 2.12 7.91 -2.39 -0.02 2.10 16 47 H 0.06 2.07 7.96 -2.39 -0.02 2.05 16 48 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.01 0.56 7.75 -2.39 -0.02 0.54 16 51 H 0.38 20.87 7.67 -92.71 -0.71 20.16 16 52 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -80.78 421.88 3.01 -77.77 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.20 Total: 27.07 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 6.98 Total: 3.04 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -6.13 Total: -134.00 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.07 Total: -23.62 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.74 kcal Total: -80.78 3.01 -77.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104267975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.620 kcal (2) G-P(sol) polarization free energy of solvation -80.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds