Wall clock time and date at job start Wed Apr 1 2020 04:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 110.37481 * 2 1 4 4 C 1.54007 * 110.32685 * 237.80904 * 2 1 3 5 5 N 1.47491 * 107.08419 * 242.41785 * 4 2 1 6 6 C 1.34774 * 127.03392 * 154.51396 * 5 4 2 7 7 O 1.21280 * 119.99923 * 354.96120 * 6 5 4 8 8 C 1.50698 * 119.99839 * 175.22592 * 6 5 4 9 9 H 1.09004 * 109.50832 * 28.16022 * 8 6 5 10 10 C 1.53147 * 109.50922 * 148.29434 * 8 6 5 11 11 C 1.53244 * 109.51132 * 189.40221 * 10 8 6 12 12 N 1.46476 * 108.80018 * 309.64471 * 11 10 8 13 13 C 1.36313 * 127.77721 * 197.15836 * 12 11 10 14 14 C 1.34861 * 106.68742 * 179.90786 * 13 12 11 15 15 N 1.34296 * 108.07081 * 0.02562 * 14 13 12 16 16 C 1.30094 * 109.21266 * 0.02562 * 15 14 13 17 17 C 1.51037 * 127.39061 * 179.97438 * 16 15 14 18 18 C 1.48118 * 105.92950 * 334.77808 * 5 4 2 19 19 C 1.54599 * 103.42402 * 39.02534 * 18 5 4 20 20 H 1.09001 * 110.57326 * 81.17285 * 19 18 5 21 21 C 1.52996 * 110.83254 * 204.44639 * 19 18 5 22 22 C 1.53005 * 109.47258 * 288.56470 * 21 19 18 23 23 N 1.46502 * 109.47268 * 179.97438 * 22 21 19 24 24 C 1.36934 * 119.99801 * 179.97438 * 23 22 21 25 25 H 1.07998 * 120.00181 * 0.02562 * 24 23 22 26 26 C 1.38817 * 119.99603 * 180.02562 * 24 23 22 27 27 N 1.31612 * 120.00254 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 119.99592 * 180.02562 * 26 24 23 29 29 H 1.48500 * 109.47081 * 90.00060 * 28 26 24 30 30 H 1.48497 * 109.46803 * 209.99988 * 28 26 24 31 31 H 1.48497 * 109.47417 * 329.99894 * 28 26 24 32 32 H 1.08996 * 109.47477 * 180.73948 * 1 2 3 33 33 H 1.08998 * 109.47073 * 300.73862 * 1 2 3 34 34 H 1.09000 * 109.47082 * 60.73788 * 1 2 3 35 35 H 1.08992 * 109.91605 * 123.05247 * 4 2 1 36 36 H 1.09008 * 109.90944 * 1.77287 * 4 2 1 37 37 H 1.09004 * 109.47139 * 309.42320 * 10 8 6 38 38 H 1.09006 * 109.46487 * 69.39913 * 10 8 6 39 39 H 1.09001 * 109.60880 * 189.83769 * 11 10 8 40 40 H 1.09000 * 109.56021 * 69.42392 * 11 10 8 41 41 H 1.07991 * 126.65674 * 359.87100 * 13 12 11 42 42 H 1.07993 * 125.96562 * 179.97438 * 14 13 12 43 43 H 1.08997 * 109.71748 * 76.30315 * 17 16 15 44 44 H 1.09005 * 109.74944 * 315.68729 * 17 16 15 45 45 H 1.08997 * 110.65907 * 157.50931 * 18 5 4 46 46 H 1.09000 * 110.66090 * 280.62771 * 18 5 4 47 47 H 1.09005 * 109.47353 * 48.56205 * 21 19 18 48 48 H 1.08997 * 109.47216 * 168.56424 * 21 19 18 49 49 H 1.09005 * 109.46721 * 300.00121 * 22 21 19 50 50 H 1.08997 * 109.47045 * 59.99849 * 22 21 19 51 51 H 0.97003 * 119.99745 * 0.02562 * 23 22 21 52 52 H 0.97001 * 119.99945 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0217 0.0000 4 6 2.0650 -0.7694 -1.2222 5 7 2.8276 -1.9225 -0.7084 6 6 3.0612 -3.0887 -1.3423 7 8 2.5480 -3.3068 -2.4194 8 6 3.9552 -4.1241 -0.7101 9 1 3.9159 -4.0254 0.3747 10 6 3.4826 -5.5235 -1.1146 11 6 4.2359 -6.5754 -0.2934 12 7 5.6718 -6.2972 -0.3733 13 6 6.7030 -7.1370 -0.0743 14 6 7.8407 -6.4489 -0.3001 15 7 7.5067 -5.2198 -0.7258 16 6 6.2104 -5.1202 -0.7717 17 6 5.3971 -3.9188 -1.1916 18 6 3.2788 -1.5392 0.6493 19 6 2.0670 -0.7724 1.2270 20 1 1.3174 -1.4684 1.6035 21 6 2.5094 0.1961 2.3257 22 6 2.9176 -0.5958 3.5696 23 7 3.3419 0.3316 4.6215 24 6 3.7538 -0.1514 5.8348 25 1 3.7663 -1.2160 6.0162 26 6 4.1553 0.7273 6.8316 27 7 4.1396 2.0247 6.6107 28 14 4.7179 0.0684 8.4865 29 1 6.1831 -0.1708 8.4519 30 1 4.4030 1.0593 9.5467 31 1 4.0148 -1.2071 8.7764 32 1 -0.3634 -1.0275 0.0133 33 1 -0.3633 0.5253 0.8833 34 1 -0.3633 0.5023 -0.8965 35 1 2.7180 -0.1245 -1.8101 36 1 1.2333 -1.1176 -1.8348 37 1 2.4127 -5.6141 -0.9270 38 1 3.6799 -5.6812 -2.1750 39 1 4.0332 -7.5679 -0.6960 40 1 3.9119 -6.5275 0.7462 41 1 6.6243 -8.1554 0.2761 42 1 8.8451 -6.8210 -0.1619 43 1 5.4123 -3.8257 -2.2775 44 1 5.8112 -3.0174 -0.7396 45 1 3.4933 -2.4247 1.2475 46 1 4.1522 -0.8893 0.5952 47 1 3.3584 0.7821 1.9733 48 1 1.6851 0.8642 2.5747 49 1 2.0687 -1.1817 3.9220 50 1 3.7420 -1.2639 3.3207 51 1 3.3303 1.2878 4.4586 52 1 4.4205 2.6387 7.3071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104366992.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:07 Heat of formation + Delta-G solvation = 27.046819 kcal Electronic energy + Delta-G solvation = -30761.168342 eV Core-core repulsion = 26761.213063 eV Total energy + Delta-G solvation = -3999.955280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.56040 -40.53545 -38.53785 -36.44302 -35.15267 -33.76672 -33.15443 -32.16879 -30.23521 -30.14431 -29.10682 -27.14656 -26.81884 -24.93728 -24.29504 -23.15407 -22.41347 -21.64670 -20.76223 -20.05616 -19.56758 -19.15843 -17.47973 -17.29435 -17.11385 -16.35552 -16.15503 -15.55251 -15.02390 -14.73801 -14.63751 -14.52282 -14.15825 -14.08560 -14.01811 -13.74403 -13.55845 -13.34073 -13.24130 -13.16552 -12.87961 -12.55949 -12.37847 -12.30461 -12.11004 -11.81165 -11.62114 -11.53868 -11.36538 -11.23015 -11.02484 -10.85636 -10.64971 -10.51942 -10.34895 -10.15864 -10.02698 -9.99085 -9.81354 -9.69744 -8.89777 -8.88958 -8.55647 -6.95011 -5.78990 -3.07821 1.82066 2.29476 2.48522 2.65275 2.96548 3.42078 3.47103 3.48696 3.84231 4.06258 4.12327 4.16479 4.38019 4.40131 4.57679 4.60648 4.67413 4.68681 4.76592 4.79137 4.93506 5.04357 5.16864 5.21620 5.25153 5.29372 5.32548 5.35067 5.40046 5.46105 5.52356 5.56297 5.59873 5.62779 5.65544 5.71216 5.77671 5.83794 5.98740 6.02259 6.05969 6.10220 6.21829 6.31397 6.36670 6.56376 6.77072 6.81782 6.91077 7.29017 7.67131 7.87676 7.91310 8.40051 9.51196 10.09143 10.43232 11.43924 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007746 B = 0.002953 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3613.751248 B = 9478.949565 C =12375.275051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.089 0.911 4 C 0.109 3.891 5 N -0.617 5.617 6 C 0.542 3.458 7 O -0.541 6.541 8 C -0.110 4.110 9 H 0.101 0.899 10 C -0.116 4.116 11 C 0.104 3.896 12 N -0.457 5.457 13 C -0.054 4.054 14 C -0.030 4.030 15 N -0.486 5.486 16 C 0.211 3.789 17 C -0.019 4.019 18 C 0.099 3.901 19 C -0.090 4.090 20 H 0.084 0.916 21 C -0.116 4.116 22 C 0.153 3.847 23 N -0.734 5.734 24 C -0.241 4.241 25 H 0.069 0.931 26 C -0.013 4.013 27 N -0.933 5.933 28 Si 0.906 3.094 29 H -0.289 1.289 30 H -0.291 1.291 31 H -0.282 1.282 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.175 0.825 42 H 0.170 0.830 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.016 0.984 50 H 0.017 0.983 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.525 -14.844 -18.585 24.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.107 0.893 4 C -0.014 4.014 5 N -0.350 5.350 6 C 0.331 3.669 7 O -0.419 6.419 8 C -0.132 4.132 9 H 0.120 0.880 10 C -0.154 4.154 11 C -0.019 4.019 12 N -0.140 5.140 13 C -0.187 4.187 14 C -0.178 4.178 15 N -0.204 5.204 16 C -0.051 4.051 17 C -0.058 4.058 18 C -0.023 4.023 19 C -0.110 4.110 20 H 0.102 0.898 21 C -0.154 4.154 22 C 0.025 3.975 23 N -0.378 5.378 24 C -0.372 4.372 25 H 0.087 0.913 26 C -0.209 4.209 27 N -0.582 5.582 28 Si 0.737 3.263 29 H -0.217 1.217 30 H -0.217 1.217 31 H -0.208 1.208 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.192 0.808 42 H 0.188 0.812 43 H 0.114 0.886 44 H 0.120 0.880 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.034 0.966 50 H 0.034 0.966 51 H 0.217 0.783 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.346 -14.600 -19.274 24.410 hybrid contribution -0.124 -0.746 1.373 1.568 sum -3.470 -15.347 -17.902 23.833 Atomic orbital electron populations 1.21830 0.94071 1.01941 1.02096 1.22176 0.96533 0.99835 0.93686 0.89256 1.22162 0.95941 0.86704 0.96553 1.48855 1.53268 1.14741 1.18110 1.19854 0.81258 0.81008 0.84829 1.90711 1.51385 1.78023 1.21759 1.21412 0.94803 0.94491 1.02514 0.88046 1.21741 1.00943 0.91311 1.01413 1.22031 0.77042 1.00530 1.02256 1.45420 1.07142 1.11939 1.49531 1.22576 0.87321 0.98303 1.10547 1.22388 0.98508 0.90828 1.06093 1.70063 1.10343 1.20225 1.19812 1.23039 0.89526 0.88670 1.03886 1.20004 0.89592 0.93639 1.02558 1.22782 0.97936 1.00053 0.81541 1.22279 0.96662 0.97428 0.94632 0.89779 1.21744 1.01456 0.97696 0.94520 1.20664 0.96206 0.92833 0.87776 1.42359 1.79090 1.05174 1.11171 1.19214 1.35939 0.92091 0.89946 0.91268 1.24739 1.02360 0.95315 0.98521 1.69652 1.54071 1.00727 1.33727 0.86204 0.78537 0.77626 0.83919 1.21655 1.21731 1.20782 0.92671 0.91852 0.92579 0.91468 0.90448 0.88672 0.89421 0.88647 0.89282 0.80789 0.81240 0.88602 0.87961 0.89857 0.89966 0.91485 0.91277 0.96581 0.96554 0.78289 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.89 37.16 0.33 -0.90 16 2 C -0.10 -0.96 3.17 -89.25 -0.28 -1.25 16 3 H 0.09 0.81 7.85 -51.93 -0.41 0.41 16 4 C 0.11 1.07 6.65 -2.97 -0.02 1.05 16 5 N -0.62 -6.42 3.29 -169.97 -0.56 -6.98 16 6 C 0.54 6.01 6.89 -10.99 -0.08 5.93 16 7 O -0.54 -7.63 16.69 5.56 0.09 -7.54 16 8 C -0.11 -0.98 2.25 -91.49 -0.21 -1.18 16 9 H 0.10 0.84 6.32 -51.93 -0.33 0.52 16 10 C -0.12 -0.86 4.72 -26.53 -0.13 -0.98 16 11 C 0.10 0.66 6.98 -3.93 -0.03 0.63 16 12 N -0.46 -4.37 3.13 -113.77 -0.36 -4.72 16 13 C -0.05 -0.50 11.65 -16.76 -0.20 -0.69 16 14 C -0.03 -0.34 11.87 -17.67 -0.21 -0.55 16 15 N -0.49 -6.64 11.24 -10.62 -0.12 -6.76 16 16 C 0.21 2.47 7.65 -155.24 -1.19 1.28 16 17 C -0.02 -0.18 5.63 -27.51 -0.15 -0.34 16 18 C 0.10 1.01 5.75 -2.31 -0.01 0.99 16 19 C -0.09 -0.97 2.57 -88.93 -0.23 -1.20 16 20 H 0.08 0.93 7.86 -51.93 -0.41 0.52 16 21 C -0.12 -1.62 4.70 -26.73 -0.13 -1.74 16 22 C 0.15 2.83 6.15 -4.04 -0.02 2.81 16 23 N -0.73 -18.09 5.60 -59.90 -0.34 -18.43 16 24 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 25 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 26 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 27 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 28 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 31 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 32 H 0.05 0.49 8.13 -51.93 -0.42 0.07 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.80 7.55 -51.92 -0.39 0.41 16 37 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 38 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 43 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 44 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 46 H 0.08 0.85 7.93 -51.93 -0.41 0.44 16 47 H 0.07 0.95 7.99 -51.93 -0.41 0.53 16 48 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 50 H 0.02 0.30 7.67 -51.93 -0.40 -0.09 16 51 H 0.38 9.94 7.67 -40.82 -0.31 9.62 16 52 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 412.03 15.07 6.21 6.21 Total: -1.00 -34.90 412.03 -11.03 -45.93 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -8.87 Total: 5.76 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -2.79 Total: -3.42 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.65 Total: -64.14 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: 0.09 Total: -7.54 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.90 -11.03 -45.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104366992.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.980 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds